Wall clock time and date at job start Wed Apr 1 2020 04:58:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86802 * 120.00185 * 2 1
4 4 H 1.48497 * 109.47150 * 270.00368 * 3 2 1
5 5 H 1.48495 * 109.46859 * 29.99947 * 3 2 1
6 6 H 1.48497 * 109.47266 * 150.00194 * 3 2 1
7 7 C 1.38699 * 120.00421 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99757 * 0.02562 * 7 2 1
9 9 O 1.34810 * 120.00541 * 180.02562 * 7 2 1
10 10 C 1.35523 * 117.00112 * 185.32517 * 9 7 2
11 11 C 1.38831 * 120.16075 * 5.77018 * 10 9 7
12 12 C 1.38034 * 120.07013 * 180.29960 * 11 10 9
13 13 C 1.38574 * 120.39638 * 359.67548 * 12 11 10
14 14 C 1.37823 * 120.33009 * 0.02562 * 13 12 11
15 15 C 1.39675 * 119.91634 * 0.02562 * 14 13 12
16 16 C 1.47527 * 120.19302 * 180.02562 * 15 14 13
17 17 O 1.21593 * 120.00156 * 222.16588 * 16 15 14
18 18 N 1.34780 * 120.00268 * 42.17132 * 16 15 14
19 19 C 1.46971 * 120.59447 * 185.05537 * 18 16 15
20 20 C 1.53364 * 108.63215 * 235.20475 * 19 18 16
21 21 N 1.46966 * 108.63386 * 310.57195 * 20 19 18
22 22 C 1.34773 * 120.59309 * 235.20213 * 21 20 19
23 23 O 1.21354 * 120.00014 * 184.97163 * 22 21 20
24 24 C 1.49435 * 120.00423 * 4.70324 * 22 21 20
25 25 O 1.21259 * 119.99711 * 354.22657 * 24 22 21
26 26 O 1.34537 * 120.00719 * 174.23261 * 24 22 21
27 27 C 1.46962 * 118.81071 * 55.48665 * 21 20 19
28 28 C 1.46960 * 120.59288 * 5.03187 * 18 16 15
29 29 H 0.96996 * 119.99999 * 0.02562 * 1 2 3
30 30 H 1.07994 * 119.96760 * 0.02562 * 11 10 9
31 31 H 1.07997 * 119.79899 * 179.69686 * 12 11 10
32 32 H 1.08000 * 119.82910 * 180.02562 * 13 12 11
33 33 H 1.07998 * 120.04096 * 179.97438 * 14 13 12
34 34 H 1.09001 * 109.60694 * 115.45627 * 19 18 16
35 35 H 1.09004 * 109.60766 * 354.94604 * 19 18 16
36 36 H 1.09002 * 109.60536 * 190.83052 * 20 19 18
37 37 H 1.08998 * 109.61368 * 70.32071 * 20 19 18
38 38 H 0.96697 * 117.00375 * 179.97438 * 26 24 22
39 39 H 1.09004 * 109.61060 * 64.26257 * 27 21 20
40 40 H 1.09005 * 109.60973 * 184.77479 * 27 21 20
41 41 H 1.08998 * 109.60896 * 244.54249 * 28 18 16
42 42 H 1.09002 * 109.61188 * 5.05341 * 28 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4467 2.6526 0.7000
6 1 3.5468 1.4401 0.7000
7 6 2.0088 -1.2011 -0.0005
8 1 1.4688 -2.1364 -0.0014
9 8 3.3569 -1.2011 0.0000
10 6 3.9722 -2.4034 -0.1126
11 6 3.2248 -3.5507 -0.3419
12 6 3.8529 -4.7751 -0.4501
13 6 5.2309 -4.8686 -0.3380
14 6 5.9894 -3.7393 -0.1166
15 6 5.3677 -2.4937 -0.0038
16 6 6.1737 -1.2809 0.2327
17 8 5.7932 -0.4435 1.0280
18 7 7.3318 -1.1010 -0.4329
19 6 8.1994 0.0456 -0.1282
20 6 8.4545 0.8250 -1.4241
21 7 8.8727 -0.1221 -2.4672
22 6 10.0307 0.0579 -3.1327
23 8 10.3226 -0.6779 -4.0526
24 6 10.9526 1.1673 -2.7420
25 8 10.6131 1.9686 -1.8977
26 8 12.1591 1.2770 -3.3270
27 6 8.0024 -1.2654 -2.7758
28 6 7.7499 -2.0480 -1.4760
29 1 -0.4850 0.8400 -0.0004
30 1 2.1505 -3.4858 -0.4312
31 1 3.2668 -5.6655 -0.6236
32 1 5.7129 -5.8312 -0.4246
33 1 7.0630 -3.8177 -0.0296
34 1 9.1465 -0.3101 0.2775
35 1 7.7079 0.6934 0.5977
36 1 9.2427 1.5598 -1.2598
37 1 7.5393 1.3297 -1.7337
38 1 12.7202 2.0111 -3.0417
39 1 7.0558 -0.9061 -3.1795
40 1 8.4920 -1.9116 -3.5045
41 1 8.6651 -2.5527 -1.1663
42 1 6.9617 -2.7828 -1.6403
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000738425538.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:58:53
Heat of formation + Delta-G solvation = -103.566537 kcal
Electronic energy + Delta-G solvation = -31116.500619 eV
Core-core repulsion = 26643.778006 eV
Total energy + Delta-G solvation = -4472.722613 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 348.125 amu
Computer time = 0.82 seconds
Orbital eigenvalues (eV)
-41.58808 -40.28778 -39.43243 -38.59835 -37.41053 -36.66066 -36.53465 -34.07099
-32.52524 -31.91211 -30.53712 -29.33792 -28.39613 -26.07266 -25.43614 -24.26053
-23.52603 -22.13260 -21.50906 -20.84944 -19.31409 -18.90439 -18.10841 -17.79794
-17.39614 -16.89083 -16.78196 -16.24837 -15.89774 -15.48223 -15.26562 -15.06359
-14.87227 -14.50137 -14.18809 -14.08117 -13.96320 -13.86901 -13.57166 -13.32857
-12.92888 -12.73023 -12.53731 -12.31863 -12.27405 -12.16077 -11.73797 -11.56159
-11.33512 -11.29859 -11.25959 -10.88825 -10.82292 -10.20542 -9.98316 -9.69343
-9.47327 -9.26655 -8.96905 -8.47617 -8.33840 -7.57177 -6.53435 -4.19062
0.63755 1.55286 1.55845 2.08647 2.53370 2.91792 3.20926 3.23824
3.25727 3.37333 3.52457 4.19850 4.23597 4.31104 4.57586 4.62651
4.66042 4.88460 4.96026 4.99331 5.11053 5.18867 5.22398 5.33605
5.38692 5.52826 5.60503 5.65765 5.77315 5.81590 5.94618 5.99801
6.13533 6.28757 6.44167 6.57368 6.69448 6.78269 6.92774 7.02542
7.08367 7.39698 7.41415 7.54170 7.66488 7.88263 8.60738 8.81300
9.41713 10.52350
Molecular weight = 348.12amu
Principal moments of inertia in cm(-1)
A = 0.012107 B = 0.003544 C = 0.002972
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2312.207178 B = 7899.177366 C = 9417.529835
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.869 5.869
2 C 0.072 3.928
3 Si 0.893 3.107
4 H -0.275 1.275
5 H -0.281 1.281
6 H -0.241 1.241
7 C -0.393 4.393
8 H 0.109 0.891
9 O -0.183 6.183
10 C 0.199 3.801
11 C -0.223 4.223
12 C -0.053 4.053
13 C -0.216 4.216
14 C -0.048 4.048
15 C -0.223 4.223
16 C 0.574 3.426
17 O -0.517 6.517
18 N -0.623 5.623
19 C 0.104 3.896
20 C 0.027 3.973
21 N -0.571 5.571
22 C 0.530 3.470
23 O -0.495 6.495
24 C 0.485 3.515
25 O -0.478 6.478
26 O -0.481 6.481
27 C 0.093 3.907
28 C 0.090 3.910
29 H 0.282 0.718
30 H 0.139 0.861
31 H 0.115 0.885
32 H 0.114 0.886
33 H 0.119 0.881
34 H 0.067 0.933
35 H 0.107 0.893
36 H 0.163 0.837
37 H 0.080 0.920
38 H 0.420 0.580
39 H 0.087 0.913
40 H 0.108 0.892
41 H 0.072 0.928
42 H 0.117 0.883
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 20.695 -1.937 -5.300 21.451
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.504 5.504
2 C -0.134 4.134
3 Si 0.717 3.283
4 H -0.200 1.200
5 H -0.206 1.206
6 H -0.164 1.164
7 C -0.468 4.468
8 H 0.126 0.874
9 O -0.085 6.085
10 C 0.143 3.857
11 C -0.242 4.242
12 C -0.071 4.071
13 C -0.235 4.235
14 C -0.066 4.066
15 C -0.227 4.227
16 C 0.365 3.635
17 O -0.392 6.392
18 N -0.359 5.359
19 C -0.019 4.019
20 C -0.094 4.094
21 N -0.306 5.306
22 C 0.311 3.689
23 O -0.370 6.370
24 C 0.324 3.676
25 O -0.366 6.366
26 O -0.291 6.291
27 C -0.029 4.029
28 C -0.034 4.034
29 H 0.092 0.908
30 H 0.156 0.844
31 H 0.133 0.867
32 H 0.132 0.868
33 H 0.137 0.863
34 H 0.085 0.915
35 H 0.125 0.875
36 H 0.179 0.821
37 H 0.099 0.901
38 H 0.281 0.719
39 H 0.105 0.895
40 H 0.127 0.873
41 H 0.090 0.910
42 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 20.153 -1.566 -5.209 20.874
hybrid contribution 0.311 1.088 0.170 1.144
sum 20.464 -0.478 -5.039 21.080
Atomic orbital electron populations
1.69622 1.05711 1.28933 1.46172 1.24469 0.94974 0.99083 0.94852
0.86314 0.81700 0.81037 0.79204 1.20020 1.20634 1.16401 1.20843
0.76706 0.96791 1.52447 0.87361 1.83651 1.22638 1.25325 1.76839
1.18960 0.89892 0.85983 0.90900 1.21289 1.01431 0.92004 1.09449
1.20981 0.94393 0.96650 0.95092 1.20566 0.93986 0.97617 1.11355
1.20821 0.98566 0.91048 0.96185 1.18714 0.91066 0.93434 1.19525
1.18303 0.79186 0.86035 0.79952 1.90805 1.68722 1.44456 1.35224
1.48002 1.21966 1.27052 1.38861 1.21870 0.94313 0.88766 0.96989
1.23867 1.05669 0.93243 0.86595 1.47933 1.18546 1.27328 1.36821
1.18646 0.82058 0.84268 0.83921 1.90828 1.73720 1.44965 1.27465
1.23391 0.81557 0.84609 0.78036 1.90437 1.73247 1.42441 1.30464
1.84639 1.26990 1.54113 1.63403 1.22450 0.94590 0.87467 0.98351
1.22491 1.01993 0.92448 0.86490 0.90762 0.84359 0.86740 0.86826
0.86306 0.91475 0.87451 0.82079 0.90131 0.71943 0.89495 0.87338
0.90990 0.86481
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.87 -24.76 13.96 55.48 0.77 -23.98 16
2 C 0.07 2.01 5.49 -17.52 -0.10 1.91 16
3 Si 0.89 22.16 28.62 -169.99 -4.86 17.30 16
4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16
5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16
6 H -0.24 -6.35 7.11 56.52 0.40 -5.94 16
7 C -0.39 -10.92 9.90 30.90 0.31 -10.62 16
8 H 0.11 3.01 5.53 -52.49 -0.29 2.72 16
9 O -0.18 -4.85 7.42 -13.90 -0.10 -4.95 16
10 C 0.20 4.48 6.63 -38.60 -0.26 4.23 16
11 C -0.22 -4.48 9.12 -39.44 -0.36 -4.83 16
12 C -0.05 -0.85 10.03 -39.53 -0.40 -1.24 16
13 C -0.22 -3.12 10.02 -39.61 -0.40 -3.52 16
14 C -0.05 -0.72 7.36 -39.20 -0.29 -1.01 16
15 C -0.22 -4.28 5.10 -104.81 -0.53 -4.82 16
16 C 0.57 11.17 7.10 -12.47 -0.09 11.09 16
17 O -0.52 -12.30 15.64 -9.42 -0.15 -12.44 16
18 N -0.62 -9.11 2.95 -173.44 -0.51 -9.63 16
19 C 0.10 1.32 6.60 -3.60 -0.02 1.29 16
20 C 0.03 0.31 6.44 -3.60 -0.02 0.29 16
21 N -0.57 -6.33 2.94 -172.73 -0.51 -6.84 16
22 C 0.53 5.93 7.75 -11.59 -0.09 5.84 16
23 O -0.50 -6.71 16.39 -7.57 -0.12 -6.84 16
24 C 0.49 4.40 8.32 35.40 0.29 4.70 16
25 O -0.48 -4.67 13.80 -19.08 -0.26 -4.93 16
26 O -0.48 -3.22 13.30 -45.05 -0.60 -3.82 16
27 C 0.09 1.01 6.61 -3.37 -0.02 0.98 16
28 C 0.09 1.01 5.18 -3.37 -0.02 0.99 16
29 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16
30 H 0.14 2.91 5.71 -52.49 -0.30 2.61 16
31 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16
32 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16
33 H 0.12 1.43 6.74 -52.49 -0.35 1.08 16
34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
35 H 0.11 1.54 6.99 -51.93 -0.36 1.18 16
36 H 0.16 1.70 3.67 -57.28 -0.21 1.49 16
37 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16
38 H 0.42 0.49 9.11 45.56 0.41 0.90 16
39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16
40 H 0.11 1.06 7.02 -51.93 -0.36 0.70 16
41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16
42 H 0.12 1.35 4.68 -51.93 -0.24 1.11 16
LS Contribution 354.45 15.07 5.34 5.34
Total: -1.00 -35.04 354.45 -6.38 -41.41
By element:
Atomic # 1 Polarization: 7.48 SS G_CDS: -3.38 Total: 4.10 kcal
Atomic # 6 Polarization: 7.27 SS G_CDS: -1.99 Total: 5.28 kcal
Atomic # 7 Polarization: -40.21 SS G_CDS: -0.24 Total: -40.45 kcal
Atomic # 8 Polarization: -31.74 SS G_CDS: -1.24 Total: -32.98 kcal
Atomic # 14 Polarization: 22.16 SS G_CDS: -4.86 Total: 17.30 kcal
Total LS contribution 5.34 Total: 5.34 kcal
Total: -35.04 -6.38 -41.41 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000738425538.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.152 kcal
(2) G-P(sol) polarization free energy of solvation -35.036 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.188 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal
(6) G-S(sol) free energy of system = (1) + (5) -103.567 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.82 seconds