Wall clock time and date at job start Wed Apr 1 2020 04:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 120.00185 * 2 1 4 4 H 1.48497 * 109.47150 * 270.00368 * 3 2 1 5 5 H 1.48495 * 109.46859 * 29.99947 * 3 2 1 6 6 H 1.48497 * 109.47266 * 150.00194 * 3 2 1 7 7 C 1.38699 * 120.00421 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99757 * 0.02562 * 7 2 1 9 9 O 1.34810 * 120.00541 * 180.02562 * 7 2 1 10 10 C 1.35523 * 117.00112 * 185.32517 * 9 7 2 11 11 C 1.38831 * 120.16075 * 5.77018 * 10 9 7 12 12 C 1.38034 * 120.07013 * 180.29960 * 11 10 9 13 13 C 1.38574 * 120.39638 * 359.67548 * 12 11 10 14 14 C 1.37823 * 120.33009 * 0.02562 * 13 12 11 15 15 C 1.39675 * 119.91634 * 0.02562 * 14 13 12 16 16 C 1.47527 * 120.19302 * 180.02562 * 15 14 13 17 17 O 1.21593 * 120.00156 * 222.16588 * 16 15 14 18 18 N 1.34780 * 120.00268 * 42.17132 * 16 15 14 19 19 C 1.46971 * 120.59447 * 185.05537 * 18 16 15 20 20 C 1.53364 * 108.63215 * 235.20475 * 19 18 16 21 21 N 1.46966 * 108.63386 * 310.57195 * 20 19 18 22 22 C 1.34773 * 120.59309 * 235.20213 * 21 20 19 23 23 O 1.21354 * 120.00014 * 184.97163 * 22 21 20 24 24 C 1.49435 * 120.00423 * 4.70324 * 22 21 20 25 25 O 1.21259 * 119.99711 * 354.22657 * 24 22 21 26 26 O 1.34537 * 120.00719 * 174.23261 * 24 22 21 27 27 C 1.46962 * 118.81071 * 55.48665 * 21 20 19 28 28 C 1.46960 * 120.59288 * 5.03187 * 18 16 15 29 29 H 0.96996 * 119.99999 * 0.02562 * 1 2 3 30 30 H 1.07994 * 119.96760 * 0.02562 * 11 10 9 31 31 H 1.07997 * 119.79899 * 179.69686 * 12 11 10 32 32 H 1.08000 * 119.82910 * 180.02562 * 13 12 11 33 33 H 1.07998 * 120.04096 * 179.97438 * 14 13 12 34 34 H 1.09001 * 109.60694 * 115.45627 * 19 18 16 35 35 H 1.09004 * 109.60766 * 354.94604 * 19 18 16 36 36 H 1.09002 * 109.60536 * 190.83052 * 20 19 18 37 37 H 1.08998 * 109.61368 * 70.32071 * 20 19 18 38 38 H 0.96697 * 117.00375 * 179.97438 * 26 24 22 39 39 H 1.09004 * 109.61060 * 64.26257 * 27 21 20 40 40 H 1.09005 * 109.60973 * 184.77479 * 27 21 20 41 41 H 1.08998 * 109.60896 * 244.54249 * 28 18 16 42 42 H 1.09002 * 109.61188 * 5.05341 * 28 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7000 7 6 2.0088 -1.2011 -0.0005 8 1 1.4688 -2.1364 -0.0014 9 8 3.3569 -1.2011 0.0000 10 6 3.9722 -2.4034 -0.1126 11 6 3.2248 -3.5507 -0.3419 12 6 3.8529 -4.7751 -0.4501 13 6 5.2309 -4.8686 -0.3380 14 6 5.9894 -3.7393 -0.1166 15 6 5.3677 -2.4937 -0.0038 16 6 6.1737 -1.2809 0.2327 17 8 5.7932 -0.4435 1.0280 18 7 7.3318 -1.1010 -0.4329 19 6 8.1994 0.0456 -0.1282 20 6 8.4545 0.8250 -1.4241 21 7 8.8727 -0.1221 -2.4672 22 6 10.0307 0.0579 -3.1327 23 8 10.3226 -0.6779 -4.0526 24 6 10.9526 1.1673 -2.7420 25 8 10.6131 1.9686 -1.8977 26 8 12.1591 1.2770 -3.3270 27 6 8.0024 -1.2654 -2.7758 28 6 7.7499 -2.0480 -1.4760 29 1 -0.4850 0.8400 -0.0004 30 1 2.1505 -3.4858 -0.4312 31 1 3.2668 -5.6655 -0.6236 32 1 5.7129 -5.8312 -0.4246 33 1 7.0630 -3.8177 -0.0296 34 1 9.1465 -0.3101 0.2775 35 1 7.7079 0.6934 0.5977 36 1 9.2427 1.5598 -1.2598 37 1 7.5393 1.3297 -1.7337 38 1 12.7202 2.0111 -3.0417 39 1 7.0558 -0.9061 -3.1795 40 1 8.4920 -1.9116 -3.5045 41 1 8.6651 -2.5527 -1.1663 42 1 6.9617 -2.7828 -1.6403 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738425538.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:58:53 Heat of formation + Delta-G solvation = -103.566537 kcal Electronic energy + Delta-G solvation = -31116.500619 eV Core-core repulsion = 26643.778006 eV Total energy + Delta-G solvation = -4472.722613 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.58808 -40.28778 -39.43243 -38.59835 -37.41053 -36.66066 -36.53465 -34.07099 -32.52524 -31.91211 -30.53712 -29.33792 -28.39613 -26.07266 -25.43614 -24.26053 -23.52603 -22.13260 -21.50906 -20.84944 -19.31409 -18.90439 -18.10841 -17.79794 -17.39614 -16.89083 -16.78196 -16.24837 -15.89774 -15.48223 -15.26562 -15.06359 -14.87227 -14.50137 -14.18809 -14.08117 -13.96320 -13.86901 -13.57166 -13.32857 -12.92888 -12.73023 -12.53731 -12.31863 -12.27405 -12.16077 -11.73797 -11.56159 -11.33512 -11.29859 -11.25959 -10.88825 -10.82292 -10.20542 -9.98316 -9.69343 -9.47327 -9.26655 -8.96905 -8.47617 -8.33840 -7.57177 -6.53435 -4.19062 0.63755 1.55286 1.55845 2.08647 2.53370 2.91792 3.20926 3.23824 3.25727 3.37333 3.52457 4.19850 4.23597 4.31104 4.57586 4.62651 4.66042 4.88460 4.96026 4.99331 5.11053 5.18867 5.22398 5.33605 5.38692 5.52826 5.60503 5.65765 5.77315 5.81590 5.94618 5.99801 6.13533 6.28757 6.44167 6.57368 6.69448 6.78269 6.92774 7.02542 7.08367 7.39698 7.41415 7.54170 7.66488 7.88263 8.60738 8.81300 9.41713 10.52350 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.012107 B = 0.003544 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.207178 B = 7899.177366 C = 9417.529835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.072 3.928 3 Si 0.893 3.107 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.241 1.241 7 C -0.393 4.393 8 H 0.109 0.891 9 O -0.183 6.183 10 C 0.199 3.801 11 C -0.223 4.223 12 C -0.053 4.053 13 C -0.216 4.216 14 C -0.048 4.048 15 C -0.223 4.223 16 C 0.574 3.426 17 O -0.517 6.517 18 N -0.623 5.623 19 C 0.104 3.896 20 C 0.027 3.973 21 N -0.571 5.571 22 C 0.530 3.470 23 O -0.495 6.495 24 C 0.485 3.515 25 O -0.478 6.478 26 O -0.481 6.481 27 C 0.093 3.907 28 C 0.090 3.910 29 H 0.282 0.718 30 H 0.139 0.861 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.119 0.881 34 H 0.067 0.933 35 H 0.107 0.893 36 H 0.163 0.837 37 H 0.080 0.920 38 H 0.420 0.580 39 H 0.087 0.913 40 H 0.108 0.892 41 H 0.072 0.928 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.695 -1.937 -5.300 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.134 4.134 3 Si 0.717 3.283 4 H -0.200 1.200 5 H -0.206 1.206 6 H -0.164 1.164 7 C -0.468 4.468 8 H 0.126 0.874 9 O -0.085 6.085 10 C 0.143 3.857 11 C -0.242 4.242 12 C -0.071 4.071 13 C -0.235 4.235 14 C -0.066 4.066 15 C -0.227 4.227 16 C 0.365 3.635 17 O -0.392 6.392 18 N -0.359 5.359 19 C -0.019 4.019 20 C -0.094 4.094 21 N -0.306 5.306 22 C 0.311 3.689 23 O -0.370 6.370 24 C 0.324 3.676 25 O -0.366 6.366 26 O -0.291 6.291 27 C -0.029 4.029 28 C -0.034 4.034 29 H 0.092 0.908 30 H 0.156 0.844 31 H 0.133 0.867 32 H 0.132 0.868 33 H 0.137 0.863 34 H 0.085 0.915 35 H 0.125 0.875 36 H 0.179 0.821 37 H 0.099 0.901 38 H 0.281 0.719 39 H 0.105 0.895 40 H 0.127 0.873 41 H 0.090 0.910 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 20.153 -1.566 -5.209 20.874 hybrid contribution 0.311 1.088 0.170 1.144 sum 20.464 -0.478 -5.039 21.080 Atomic orbital electron populations 1.69622 1.05711 1.28933 1.46172 1.24469 0.94974 0.99083 0.94852 0.86314 0.81700 0.81037 0.79204 1.20020 1.20634 1.16401 1.20843 0.76706 0.96791 1.52447 0.87361 1.83651 1.22638 1.25325 1.76839 1.18960 0.89892 0.85983 0.90900 1.21289 1.01431 0.92004 1.09449 1.20981 0.94393 0.96650 0.95092 1.20566 0.93986 0.97617 1.11355 1.20821 0.98566 0.91048 0.96185 1.18714 0.91066 0.93434 1.19525 1.18303 0.79186 0.86035 0.79952 1.90805 1.68722 1.44456 1.35224 1.48002 1.21966 1.27052 1.38861 1.21870 0.94313 0.88766 0.96989 1.23867 1.05669 0.93243 0.86595 1.47933 1.18546 1.27328 1.36821 1.18646 0.82058 0.84268 0.83921 1.90828 1.73720 1.44965 1.27465 1.23391 0.81557 0.84609 0.78036 1.90437 1.73247 1.42441 1.30464 1.84639 1.26990 1.54113 1.63403 1.22450 0.94590 0.87467 0.98351 1.22491 1.01993 0.92448 0.86490 0.90762 0.84359 0.86740 0.86826 0.86306 0.91475 0.87451 0.82079 0.90131 0.71943 0.89495 0.87338 0.90990 0.86481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.76 13.96 55.48 0.77 -23.98 16 2 C 0.07 2.01 5.49 -17.52 -0.10 1.91 16 3 Si 0.89 22.16 28.62 -169.99 -4.86 17.30 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.24 -6.35 7.11 56.52 0.40 -5.94 16 7 C -0.39 -10.92 9.90 30.90 0.31 -10.62 16 8 H 0.11 3.01 5.53 -52.49 -0.29 2.72 16 9 O -0.18 -4.85 7.42 -13.90 -0.10 -4.95 16 10 C 0.20 4.48 6.63 -38.60 -0.26 4.23 16 11 C -0.22 -4.48 9.12 -39.44 -0.36 -4.83 16 12 C -0.05 -0.85 10.03 -39.53 -0.40 -1.24 16 13 C -0.22 -3.12 10.02 -39.61 -0.40 -3.52 16 14 C -0.05 -0.72 7.36 -39.20 -0.29 -1.01 16 15 C -0.22 -4.28 5.10 -104.81 -0.53 -4.82 16 16 C 0.57 11.17 7.10 -12.47 -0.09 11.09 16 17 O -0.52 -12.30 15.64 -9.42 -0.15 -12.44 16 18 N -0.62 -9.11 2.95 -173.44 -0.51 -9.63 16 19 C 0.10 1.32 6.60 -3.60 -0.02 1.29 16 20 C 0.03 0.31 6.44 -3.60 -0.02 0.29 16 21 N -0.57 -6.33 2.94 -172.73 -0.51 -6.84 16 22 C 0.53 5.93 7.75 -11.59 -0.09 5.84 16 23 O -0.50 -6.71 16.39 -7.57 -0.12 -6.84 16 24 C 0.49 4.40 8.32 35.40 0.29 4.70 16 25 O -0.48 -4.67 13.80 -19.08 -0.26 -4.93 16 26 O -0.48 -3.22 13.30 -45.05 -0.60 -3.82 16 27 C 0.09 1.01 6.61 -3.37 -0.02 0.98 16 28 C 0.09 1.01 5.18 -3.37 -0.02 0.99 16 29 H 0.28 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.14 2.91 5.71 -52.49 -0.30 2.61 16 31 H 0.11 1.52 8.06 -52.49 -0.42 1.09 16 32 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16 33 H 0.12 1.43 6.74 -52.49 -0.35 1.08 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 1.54 6.99 -51.93 -0.36 1.18 16 36 H 0.16 1.70 3.67 -57.28 -0.21 1.49 16 37 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.42 0.49 9.11 45.56 0.41 0.90 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.11 1.06 7.02 -51.93 -0.36 0.70 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.12 1.35 4.68 -51.93 -0.24 1.11 16 LS Contribution 354.45 15.07 5.34 5.34 Total: -1.00 -35.04 354.45 -6.38 -41.41 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -3.38 Total: 4.10 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -1.99 Total: 5.28 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: -0.24 Total: -40.45 kcal Atomic # 8 Polarization: -31.74 SS G_CDS: -1.24 Total: -32.98 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.86 Total: 17.30 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.04 -6.38 -41.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738425538.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.152 kcal (2) G-P(sol) polarization free energy of solvation -35.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds