Wall clock time and date at job start Wed Apr 1 2020 04:58:53
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31519 * 1
3 3 Si 1.86802 * 120.00185 * 2 1
4 4 H 1.48497 * 109.47150 * 270.00368 * 3 2 1
5 5 H 1.48495 * 109.46859 * 29.99947 * 3 2 1
6 6 H 1.48497 * 109.47266 * 150.00194 * 3 2 1
7 7 C 1.38699 * 120.00421 * 180.02562 * 2 1 3
8 8 H 1.08000 * 119.99757 * 0.02562 * 7 2 1
9 9 O 1.34810 * 120.00541 * 180.02562 * 7 2 1
10 10 C 1.35523 * 117.00112 * 185.32517 * 9 7 2
11 11 C 1.38831 * 120.16075 * 5.77018 * 10 9 7
12 12 C 1.38034 * 120.07013 * 180.29960 * 11 10 9
13 13 C 1.38574 * 120.39638 * 359.67548 * 12 11 10
14 14 C 1.37823 * 120.33009 * 0.02562 * 13 12 11
15 15 C 1.39675 * 119.91634 * 0.02562 * 14 13 12
16 16 C 1.47527 * 120.19302 * 180.02562 * 15 14 13
17 17 O 1.21593 * 120.00156 * 222.16588 * 16 15 14
18 18 N 1.34780 * 120.00268 * 42.17132 * 16 15 14
19 19 C 1.46971 * 120.59447 * 185.05537 * 18 16 15
20 20 C 1.53364 * 108.63215 * 235.20475 * 19 18 16
21 21 N 1.46966 * 108.63386 * 310.57195 * 20 19 18
22 22 C 1.34773 * 120.59309 * 235.20213 * 21 20 19
23 23 O 1.21354 * 120.00014 * 184.97163 * 22 21 20
24 24 C 1.49435 * 120.00423 * 4.70324 * 22 21 20
25 25 O 1.21259 * 119.99711 * 354.22657 * 24 22 21
26 26 O 1.34537 * 120.00719 * 174.23261 * 24 22 21
27 27 C 1.46962 * 118.81071 * 55.48665 * 21 20 19
28 28 C 1.46960 * 120.59288 * 5.03187 * 18 16 15
29 29 H 0.96996 * 119.99999 * 0.02562 * 1 2 3
30 30 H 1.07994 * 119.96760 * 0.02562 * 11 10 9
31 31 H 1.07997 * 119.79899 * 179.69686 * 12 11 10
32 32 H 1.08000 * 119.82910 * 180.02562 * 13 12 11
33 33 H 1.07998 * 120.04096 * 179.97438 * 14 13 12
34 34 H 1.09001 * 109.60694 * 115.45627 * 19 18 16
35 35 H 1.09004 * 109.60766 * 354.94604 * 19 18 16
36 36 H 1.09002 * 109.60536 * 190.83052 * 20 19 18
37 37 H 1.08998 * 109.61368 * 70.32071 * 20 19 18
38 38 H 0.96697 * 117.00375 * 179.97438 * 26 24 22
39 39 H 1.09004 * 109.61060 * 64.26257 * 27 21 20
40 40 H 1.09005 * 109.60973 * 184.77479 * 27 21 20
41 41 H 1.08998 * 109.60896 * 244.54249 * 28 18 16
42 42 H 1.09002 * 109.61188 * 5.05341 * 28 18 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2493 1.6177 0.0000
4 1 2.4967 2.0464 -1.4000
5 1 1.4467 2.6526 0.7000
6 1 3.5468 1.4401 0.7000
7 6 2.0088 -1.2011 -0.0005
8 1 1.4688 -2.1364 -0.0014
9 8 3.3569 -1.2011 0.0000
10 6 3.9722 -2.4034 -0.1126
11 6 3.2248 -3.5507 -0.3419
12 6 3.8529 -4.7751 -0.4501
13 6 5.2309 -4.8686 -0.3380
14 6 5.9894 -3.7393 -0.1166
15 6 5.3677 -2.4937 -0.0038
16 6 6.1737 -1.2809 0.2327
17 8 5.7932 -0.4435 1.0280
18 7 7.3318 -1.1010 -0.4329
19 6 8.1994 0.0456 -0.1282
20 6 8.4545 0.8250 -1.4241
21 7 8.8727 -0.1221 -2.4672
22 6 10.0307 0.0579 -3.1327
23 8 10.3226 -0.6779 -4.0526
24 6 10.9526 1.1673 -2.7420
25 8 10.6131 1.9686 -1.8977
26 8 12.1591 1.2770 -3.3270
27 6 8.0024 -1.2654 -2.7758
28 6 7.7499 -2.0480 -1.4760
29 1 -0.4850 0.8400 -0.0004
30 1 2.1505 -3.4858 -0.4312
31 1 3.2668 -5.6655 -0.6236
32 1 5.7129 -5.8312 -0.4246
33 1 7.0630 -3.8177 -0.0296
34 1 9.1465 -0.3101 0.2775
35 1 7.7079 0.6934 0.5977
36 1 9.2427 1.5598 -1.2598
37 1 7.5393 1.3297 -1.7337
38 1 12.7202 2.0111 -3.0417
39 1 7.0558 -0.9061 -3.1795
40 1 8.4920 -1.9116 -3.5045
41 1 8.6651 -2.5527 -1.1663
42 1 6.9617 -2.7828 -1.6403
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000738425538.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:58:53
Heat of formation + Delta-G solvation = -129.403708 kcal
Electronic energy + Delta-G solvation = -31117.621003 eV
Core-core repulsion = 26643.778006 eV
Total energy + Delta-G solvation = -4473.842997 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 348.125 amu
Computer time = 0.87 seconds
Orbital eigenvalues (eV)
-42.41775 -41.60190 -40.51975 -39.91512 -38.40318 -38.21332 -37.41784 -35.21414
-34.53152 -32.99996 -31.81501 -30.85209 -29.45280 -27.34766 -26.94631 -25.35945
-24.68082 -23.26165 -22.98895 -21.86967 -20.52865 -19.92102 -19.56602 -19.05389
-18.57064 -18.12246 -17.57861 -17.41020 -17.20820 -16.71056 -16.50170 -16.15532
-15.98965 -15.77793 -15.71877 -15.55962 -15.42808 -14.85128 -14.77587 -14.58560
-14.37079 -14.11780 -14.07016 -13.77855 -13.41802 -13.07326 -12.88206 -12.79216
-12.67479 -12.56885 -12.43947 -12.33917 -12.17655 -12.09909 -11.55371 -11.02100
-10.95267 -10.68900 -10.46964 -9.85336 -9.51735 -9.15950 -8.58553 -6.27934
-0.13235 0.12090 0.62098 0.81817 1.22017 1.24809 1.51261 1.67629
1.77050 1.93395 2.23951 2.39360 2.71325 2.99122 3.07440 3.47941
3.60158 3.69928 3.79514 4.04231 4.07510 4.15956 4.19398 4.26034
4.36545 4.49527 4.53130 4.55063 4.62749 4.69728 4.78942 4.84312
4.99415 5.06069 5.29823 5.38886 5.47220 5.54484 5.61716 5.68340
5.79967 5.83671 6.14729 6.28041 6.35443 6.72183 6.77490 7.17676
7.54430 8.52413
Molecular weight = 348.12amu
Principal moments of inertia in cm(-1)
A = 0.012107 B = 0.003544 C = 0.002972
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2312.207178 B = 7899.177366 C = 9417.529835
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.912 5.912
2 C 0.024 3.976
3 Si 0.950 3.050
4 H -0.266 1.266
5 H -0.265 1.265
6 H -0.271 1.271
7 C -0.397 4.397
8 H 0.091 0.909
9 O -0.226 6.226
10 C 0.160 3.840
11 C -0.244 4.244
12 C -0.045 4.045
13 C -0.181 4.181
14 C -0.036 4.036
15 C -0.225 4.225
16 C 0.567 3.433
17 O -0.574 6.574
18 N -0.613 5.613
19 C 0.101 3.899
20 C 0.038 3.962
21 N -0.572 5.572
22 C 0.531 3.469
23 O -0.519 6.519
24 C 0.497 3.503
25 O -0.486 6.486
26 O -0.477 6.477
27 C 0.093 3.907
28 C 0.088 3.912
29 H 0.286 0.714
30 H 0.114 0.886
31 H 0.151 0.849
32 H 0.168 0.832
33 H 0.163 0.837
34 H 0.097 0.903
35 H 0.084 0.916
36 H 0.176 0.824
37 H 0.062 0.938
38 H 0.445 0.555
39 H 0.073 0.927
40 H 0.125 0.875
41 H 0.107 0.893
42 H 0.118 0.882
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 25.042 -4.337 -6.256 26.173
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.552 5.552
2 C -0.176 4.176
3 Si 0.774 3.226
4 H -0.191 1.191
5 H -0.189 1.189
6 H -0.196 1.196
7 C -0.473 4.473
8 H 0.108 0.892
9 O -0.131 6.131
10 C 0.108 3.892
11 C -0.263 4.263
12 C -0.063 4.063
13 C -0.199 4.199
14 C -0.054 4.054
15 C -0.230 4.230
16 C 0.357 3.643
17 O -0.453 6.453
18 N -0.347 5.347
19 C -0.021 4.021
20 C -0.083 4.083
21 N -0.306 5.306
22 C 0.314 3.686
23 O -0.395 6.395
24 C 0.336 3.664
25 O -0.375 6.375
26 O -0.290 6.290
27 C -0.028 4.028
28 C -0.035 4.035
29 H 0.095 0.905
30 H 0.132 0.868
31 H 0.168 0.832
32 H 0.185 0.815
33 H 0.181 0.819
34 H 0.115 0.885
35 H 0.103 0.897
36 H 0.192 0.808
37 H 0.081 0.919
38 H 0.310 0.690
39 H 0.092 0.908
40 H 0.143 0.857
41 H 0.125 0.875
42 H 0.135 0.865
Dipole moment (debyes) X Y Z Total
from point charges 24.590 -4.000 -6.210 25.675
hybrid contribution -0.628 1.463 0.382 1.637
sum 23.962 -2.538 -5.828 24.791
Atomic orbital electron populations
1.69677 1.06453 1.29547 1.49568 1.25051 0.95665 1.01402 0.95509
0.85488 0.79183 0.78761 0.79173 1.19141 1.18917 1.19577 1.20784
0.77977 0.96249 1.52319 0.89164 1.83619 1.21304 1.27402 1.80818
1.19638 0.91610 0.85720 0.92279 1.21325 1.00563 0.93381 1.11069
1.21434 0.95870 0.95932 0.93081 1.21232 0.92955 0.99465 1.06287
1.21339 1.00802 0.89216 0.94078 1.19099 0.89891 0.95418 1.18566
1.18498 0.80252 0.85667 0.79833 1.90781 1.70371 1.46112 1.38062
1.48043 1.20503 1.27857 1.38273 1.22023 0.94645 0.88133 0.97328
1.23782 1.05376 0.93222 0.85953 1.47951 1.18779 1.27254 1.36633
1.18917 0.82021 0.84433 0.83252 1.90818 1.74274 1.46058 1.28362
1.22778 0.81985 0.83772 0.77894 1.90420 1.73557 1.42577 1.30995
1.84585 1.26148 1.55410 1.62884 1.22443 0.94316 0.87678 0.98411
1.22755 1.03292 0.91850 0.85555 0.90455 0.86782 0.83171 0.81462
0.81936 0.88514 0.89729 0.80802 0.91924 0.68991 0.90820 0.85711
0.87469 0.86470
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -55.17 13.96 21.62 0.30 -54.86 16
2 C 0.02 1.42 5.49 84.85 0.47 1.88 16
3 Si 0.95 48.94 28.62 68.60 1.96 50.90 16
4 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16
5 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16
6 H -0.27 -15.15 7.11 99.48 0.71 -14.44 16
7 C -0.40 -23.79 9.90 67.93 0.67 -23.12 16
8 H 0.09 5.50 5.53 -2.91 -0.02 5.48 16
9 O -0.23 -12.80 7.42 -5.98 -0.04 -12.84 16
10 C 0.16 7.43 6.63 22.91 0.15 7.58 16
11 C -0.24 -9.98 9.12 22.36 0.20 -9.77 16
12 C -0.05 -1.30 10.03 22.30 0.22 -1.07 16
13 C -0.18 -4.13 10.02 22.25 0.22 -3.91 16
14 C -0.04 -0.92 7.36 22.52 0.17 -0.76 16
15 C -0.23 -8.46 5.10 -19.99 -0.10 -8.57 16
16 C 0.57 22.11 7.10 86.69 0.62 22.72 16
17 O -0.57 -28.58 15.64 10.05 0.16 -28.43 16
18 N -0.61 -16.98 2.95 -820.91 -2.42 -19.39 16
19 C 0.10 2.45 6.60 86.41 0.57 3.02 16
20 C 0.04 0.82 6.44 86.41 0.56 1.37 16
21 N -0.57 -11.44 2.94 -818.75 -2.41 -13.85 16
22 C 0.53 10.55 7.75 87.26 0.68 11.22 16
23 O -0.52 -12.75 16.39 9.23 0.15 -12.60 16
24 C 0.50 7.64 8.32 70.84 0.59 8.23 16
25 O -0.49 -8.28 13.80 20.61 0.28 -7.99 16
26 O -0.48 -4.84 13.30 -49.68 -0.66 -5.50 16
27 C 0.09 1.79 6.61 86.57 0.57 2.36 16
28 C 0.09 1.66 5.18 86.57 0.45 2.10 16
29 H 0.29 15.91 8.31 -92.71 -0.77 15.14 16
30 H 0.11 5.17 5.71 -2.91 -0.02 5.15 16
31 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16
32 H 0.17 2.29 8.06 -2.91 -0.02 2.27 16
33 H 0.16 2.81 6.74 -2.91 -0.02 2.79 16
34 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16
35 H 0.08 2.49 6.99 -2.39 -0.02 2.47 16
36 H 0.18 3.39 3.67 -87.19 -0.32 3.07 16
37 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16
38 H 0.45 -0.54 9.11 -74.06 -0.67 -1.22 16
39 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16
40 H 0.12 2.04 7.02 -2.38 -0.02 2.03 16
41 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16
42 H 0.12 2.22 4.68 -2.39 -0.01 2.21 16
Total: -1.00 -84.57 354.45 3.49 -81.08
By element:
Atomic # 1 Polarization: 10.06 SS G_CDS: 0.13 Total: 10.20 kcal
Atomic # 6 Polarization: 7.25 SS G_CDS: 6.03 Total: 13.29 kcal
Atomic # 7 Polarization: -83.58 SS G_CDS: -4.53 Total: -88.11 kcal
Atomic # 8 Polarization: -67.25 SS G_CDS: -0.11 Total: -67.36 kcal
Atomic # 14 Polarization: 48.94 SS G_CDS: 1.96 Total: 50.90 kcal
Total: -84.57 3.49 -81.08 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000738425538.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -48.326 kcal
(2) G-P(sol) polarization free energy of solvation -84.573 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.898 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.078 kcal
(6) G-S(sol) free energy of system = (1) + (5) -129.404 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds