Wall clock time and date at job start Wed Apr 1 2020 05:00:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29310 * 1 3 3 Si 1.86795 * 120.00335 * 2 1 4 4 H 1.48499 * 109.47395 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47040 * 299.99764 * 3 2 1 6 6 H 1.48503 * 109.47096 * 59.99786 * 3 2 1 7 7 C 1.46788 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99756 * 198.57311 * 7 2 1 9 9 N 1.33328 * 120.00363 * 18.57228 * 7 2 1 10 10 C 1.34773 * 120.00488 * 211.66296 * 9 7 2 11 11 O 1.21462 * 120.00251 * 183.00196 * 10 9 7 12 12 C 1.47719 * 119.99626 * 3.00907 * 10 9 7 13 13 C 1.39413 * 120.07797 * 199.83400 * 12 10 9 14 14 C 1.39327 * 119.69302 * 179.70230 * 13 12 10 15 15 C 1.47741 * 120.07494 * 180.31366 * 14 13 12 16 16 O 1.21473 * 119.99850 * 0.28079 * 15 14 13 17 17 O 1.34704 * 120.00047 * 180.27883 * 15 14 13 18 18 C 1.39770 * 119.84888 * 0.59239 * 14 13 12 19 19 C 1.38070 * 120.15513 * 359.68217 * 18 14 13 20 20 N 1.48020 * 119.84229 * 180.02562 * 19 18 14 21 21 O 1.31694 * 119.99961 * 179.97438 * 20 19 18 22 22 O 1.31698 * 119.99982 * 359.97438 * 20 19 18 23 23 C 1.38072 * 120.31233 * 0.02562 * 19 18 14 24 24 C 1.46504 * 119.99492 * 31.66515 * 9 7 2 25 25 C 1.54260 * 110.03463 * 112.98618 * 24 9 7 26 26 C 1.54962 * 104.16518 * 95.74762 * 25 24 9 27 27 C 1.54892 * 102.77498 * 37.89175 * 26 25 24 28 28 C 1.53886 * 110.02911 * 230.19877 * 24 9 7 29 29 H 0.97004 * 120.00123 * 4.98658 * 1 2 3 30 30 H 1.08001 * 120.14930 * 359.97438 * 13 12 10 31 31 H 0.96698 * 117.00371 * 180.02562 * 17 15 14 32 32 H 1.07996 * 119.92417 * 179.69994 * 18 14 13 33 33 H 1.08001 * 119.92473 * 180.02562 * 23 19 18 34 34 H 1.08999 * 110.01864 * 351.58869 * 24 9 7 35 35 H 1.09003 * 110.48534 * 214.39977 * 25 24 9 36 36 H 1.09005 * 110.48321 * 337.03377 * 25 24 9 37 37 H 1.08997 * 110.72285 * 279.57868 * 26 25 24 38 38 H 1.09000 * 110.92499 * 156.29235 * 26 25 24 39 39 H 1.09001 * 110.48510 * 203.40715 * 27 26 25 40 40 H 1.08997 * 110.60055 * 80.81505 * 27 26 25 41 41 H 1.08998 * 110.03041 * 359.95320 * 28 24 9 42 42 H 1.08993 * 110.03305 * 121.33404 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2272 1.6176 0.0000 4 1 3.6872 1.3463 -0.0006 5 1 1.8685 2.3964 -1.2126 6 1 1.8684 2.3964 1.2125 7 6 2.0270 -1.2713 0.0006 8 1 3.0649 -1.2955 0.2985 9 7 1.4124 -2.3960 -0.3667 10 6 1.7707 -3.5714 0.1869 11 8 1.2491 -4.6028 -0.1867 12 6 2.7976 -3.6054 1.2482 13 6 3.4679 -4.7939 1.5341 14 6 4.4395 -4.8153 2.5325 15 6 5.1599 -6.0685 2.8377 16 8 4.9091 -7.0805 2.2144 17 8 6.0950 -6.0889 3.8072 18 6 4.7269 -3.6499 3.2487 19 6 4.0551 -2.4777 2.9643 20 7 4.3654 -1.2474 3.7267 21 8 3.7269 -0.1274 3.4576 22 8 5.2799 -1.2728 4.6740 23 6 3.0954 -2.4475 1.9721 24 6 0.3477 -2.3542 -1.3721 25 6 0.8038 -3.0786 -2.6554 26 6 0.2326 -4.5113 -2.5055 27 6 -1.1474 -4.2627 -1.8476 28 6 -0.8923 -3.1069 -0.8583 29 1 -0.4850 0.8369 -0.0730 30 1 3.2383 -5.6927 0.9812 31 1 6.5399 -6.9318 3.9704 32 1 5.4763 -3.6664 4.0261 33 1 2.5741 -1.5270 1.7546 34 1 0.0891 -1.3199 -1.5990 35 1 0.3865 -2.5920 -3.5370 36 1 1.8920 -3.1048 -2.7123 37 1 0.8675 -5.1135 -1.8556 38 1 0.1163 -4.9878 -3.4789 39 1 -1.4824 -5.1532 -1.3157 40 1 -1.8821 -3.9682 -2.5970 41 1 -0.7014 -3.5040 0.1387 42 1 -1.7523 -2.4377 -0.8350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000738427822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:53 Heat of formation + Delta-G solvation = -40.979486 kcal Electronic energy + Delta-G solvation = -31684.944484 eV Core-core repulsion = 27214.935849 eV Total energy + Delta-G solvation = -4470.008635 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -40.84090 -39.96807 -39.14458 -37.77323 -36.27098 -35.86194 -34.99226 -34.14652 -32.42564 -31.76765 -31.34123 -27.89480 -27.35853 -26.39419 -25.40475 -24.70809 -23.28211 -21.24731 -20.70625 -19.86332 -19.17362 -18.74856 -18.27072 -17.71708 -16.90068 -16.67263 -16.44920 -15.92889 -15.65244 -15.58637 -15.33151 -14.73775 -14.70692 -14.40605 -14.10132 -13.52831 -13.51579 -13.01550 -12.82725 -12.47343 -12.18240 -12.04179 -11.78325 -11.67802 -11.41464 -11.32613 -11.10020 -11.01415 -10.90252 -10.77909 -10.53666 -10.41649 -10.31386 -10.27501 -10.17271 -10.09890 -9.86387 -9.47924 -9.28017 -9.05137 -8.56336 -8.03113 -6.93965 -4.27459 -0.43144 0.44128 1.14749 1.33842 2.27250 2.73248 2.89285 3.06136 3.08391 3.22109 3.78080 3.98933 4.19329 4.44647 4.50331 4.73600 4.82191 5.04614 5.17792 5.31686 5.46291 5.52409 5.57041 5.76377 5.88847 5.93243 6.06124 6.16435 6.22578 6.34443 6.40224 6.44063 6.48018 6.52369 6.56616 6.63603 6.71625 6.75705 6.81727 7.02320 7.12456 7.23682 7.27652 7.37704 7.67369 7.93155 8.48603 9.17428 9.64937 9.97417 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.005398 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.825164 B = 5185.557837 C = 7928.087345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.064 3.936 3 Si 0.913 3.087 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.266 1.266 7 C -0.397 4.397 8 H 0.108 0.892 9 N -0.381 5.381 10 C 0.468 3.532 11 O -0.585 6.585 12 C -0.097 4.097 13 C 0.029 3.971 14 C -0.145 4.145 15 C 0.537 3.463 16 O -0.505 6.505 17 O -0.510 6.510 18 C -0.009 4.009 19 C -0.031 4.031 20 N -0.012 5.012 21 O -0.156 6.156 22 O -0.190 6.190 23 C -0.011 4.011 24 C 0.144 3.856 25 C -0.131 4.131 26 C -0.131 4.131 27 C -0.110 4.110 28 C -0.106 4.106 29 H 0.287 0.713 30 H 0.161 0.839 31 H 0.416 0.584 32 H 0.162 0.838 33 H 0.220 0.780 34 H 0.110 0.890 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.036 0.964 39 H 0.053 0.947 40 H 0.044 0.956 41 H 0.068 0.932 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.699 -4.488 1.525 6.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.155 4.155 3 Si 0.737 3.263 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.191 1.191 7 C -0.524 4.524 8 H 0.125 0.875 9 N -0.092 5.092 10 C 0.260 3.740 11 O -0.474 6.474 12 C -0.101 4.101 13 C 0.009 3.991 14 C -0.147 4.147 15 C 0.381 3.619 16 O -0.394 6.394 17 O -0.322 6.322 18 C -0.029 4.029 19 C -0.117 4.117 20 N 0.467 4.533 21 O -0.354 6.354 22 O -0.380 6.380 23 C -0.030 4.030 24 C 0.041 3.959 25 C -0.169 4.169 26 C -0.168 4.168 27 C -0.148 4.148 28 C -0.144 4.144 29 H 0.100 0.900 30 H 0.178 0.822 31 H 0.275 0.725 32 H 0.179 0.821 33 H 0.235 0.765 34 H 0.127 0.873 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.054 0.946 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.087 0.913 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.809 -5.246 0.799 6.532 hybrid contribution 0.861 0.798 0.407 1.243 sum 4.670 -4.448 1.206 6.561 Atomic orbital electron populations 1.68938 1.07995 1.30564 1.34729 1.26964 0.94661 1.00387 0.93510 0.86049 0.81112 0.80322 0.78840 1.18054 1.19921 1.19056 1.20644 0.95286 0.85239 1.51234 0.87542 1.42555 1.30470 1.05442 1.30723 1.17574 0.86634 0.85319 0.84442 1.90476 1.59125 1.33273 1.64491 1.20174 0.98998 0.91355 0.99611 1.21818 0.87336 0.99253 0.90663 1.18653 1.02508 0.91182 1.02348 1.20478 0.76955 0.87915 0.76589 1.90927 1.64073 1.34801 1.49598 1.84555 1.50972 1.43297 1.53413 1.21254 0.96176 0.88907 0.96574 1.20280 1.06966 0.83784 1.00702 1.50427 0.99260 1.03736 0.99872 1.96320 1.49938 1.16375 1.72720 1.96231 1.24812 1.93878 1.23048 1.23747 0.89155 1.04402 0.85705 1.21780 0.86638 1.01163 0.86347 1.22734 1.00251 0.96565 0.97343 1.22917 0.97675 0.97258 0.98975 1.22154 0.96824 0.98165 0.97624 1.22153 0.96883 0.95682 0.99715 0.90011 0.82154 0.72477 0.82082 0.76471 0.87272 0.92713 0.92313 0.87113 0.94566 0.92807 0.93710 0.91348 0.92807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -17.33 11.29 56.00 0.63 -16.69 16 2 C 0.06 1.37 5.04 -15.16 -0.08 1.29 16 3 Si 0.91 17.29 29.68 -169.99 -5.05 12.25 16 4 H -0.26 -4.95 7.11 56.52 0.40 -4.54 16 5 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 6 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 7 C -0.40 -8.56 6.61 -13.45 -0.09 -8.65 16 8 H 0.11 2.25 5.46 -52.48 -0.29 1.97 16 9 N -0.38 -8.17 2.42 -106.11 -0.26 -8.43 16 10 C 0.47 9.86 6.57 -12.39 -0.08 9.78 16 11 O -0.58 -12.81 10.72 5.40 0.06 -12.75 16 12 C -0.10 -1.80 5.68 -105.02 -0.60 -2.39 16 13 C 0.03 0.48 9.13 -38.74 -0.35 0.12 16 14 C -0.14 -2.09 5.87 -105.04 -0.62 -2.70 16 15 C 0.54 6.98 8.27 34.61 0.29 7.27 16 16 O -0.51 -7.82 17.13 -19.25 -0.33 -8.15 16 17 O -0.51 -4.79 12.67 -40.50 -0.51 -5.31 16 18 C -0.01 -0.12 9.14 -39.07 -0.36 -0.48 16 19 C -0.03 -0.53 6.87 -80.07 -0.55 -1.08 16 20 N -0.01 -0.23 4.98 33.90 0.17 -0.06 16 21 O -0.16 -3.12 19.13 -31.56 -0.60 -3.73 16 22 O -0.19 -3.42 19.13 -31.57 -0.60 -4.02 16 23 C -0.01 -0.20 7.30 -39.07 -0.29 -0.48 16 24 C 0.14 2.97 2.65 -66.81 -0.18 2.79 16 25 C -0.13 -2.45 6.22 -25.04 -0.16 -2.60 16 26 C -0.13 -2.39 6.25 -24.70 -0.15 -2.54 16 27 C -0.11 -1.95 6.60 -25.07 -0.17 -2.12 16 28 C -0.11 -2.12 5.84 -25.61 -0.15 -2.27 16 29 H 0.29 5.81 8.27 -40.82 -0.34 5.48 16 30 H 0.16 2.66 7.36 -52.49 -0.39 2.27 16 31 H 0.42 1.86 9.11 45.56 0.42 2.27 16 32 H 0.16 2.04 7.10 -52.49 -0.37 1.66 16 33 H 0.22 4.41 4.05 -52.49 -0.21 4.20 16 34 H 0.11 2.38 5.55 -51.93 -0.29 2.10 16 35 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 37 H 0.11 2.26 5.03 -52.07 -0.26 2.00 16 38 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.07 1.52 6.49 -51.93 -0.34 1.18 16 42 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 353.70 15.07 5.33 5.33 Total: -1.00 -25.57 353.70 -8.08 -33.65 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: -3.39 Total: 11.97 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: -3.52 Total: -4.06 kcal Atomic # 7 Polarization: -25.73 SS G_CDS: 0.54 Total: -25.18 kcal Atomic # 8 Polarization: -31.96 SS G_CDS: -1.99 Total: -33.95 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.05 Total: 12.25 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -25.57 -8.08 -33.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738427822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.330 kcal (2) G-P(sol) polarization free energy of solvation -25.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds