Wall clock time and date at job start Wed Apr 1 2020 05:00:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29310 * 1 3 3 Si 1.86795 * 120.00335 * 2 1 4 4 H 1.48499 * 109.47395 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.47040 * 299.99764 * 3 2 1 6 6 H 1.48503 * 109.47096 * 59.99786 * 3 2 1 7 7 C 1.46788 * 119.99703 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99756 * 198.57311 * 7 2 1 9 9 N 1.33328 * 120.00363 * 18.57228 * 7 2 1 10 10 C 1.34773 * 120.00488 * 211.66296 * 9 7 2 11 11 O 1.21462 * 120.00251 * 183.00196 * 10 9 7 12 12 C 1.47719 * 119.99626 * 3.00907 * 10 9 7 13 13 C 1.39413 * 120.07797 * 199.83400 * 12 10 9 14 14 C 1.39327 * 119.69302 * 179.70230 * 13 12 10 15 15 C 1.47741 * 120.07494 * 180.31366 * 14 13 12 16 16 O 1.21473 * 119.99850 * 0.28079 * 15 14 13 17 17 O 1.34704 * 120.00047 * 180.27883 * 15 14 13 18 18 C 1.39770 * 119.84888 * 0.59239 * 14 13 12 19 19 C 1.38070 * 120.15513 * 359.68217 * 18 14 13 20 20 N 1.48020 * 119.84229 * 180.02562 * 19 18 14 21 21 O 1.31694 * 119.99961 * 179.97438 * 20 19 18 22 22 O 1.31698 * 119.99982 * 359.97438 * 20 19 18 23 23 C 1.38072 * 120.31233 * 0.02562 * 19 18 14 24 24 C 1.46504 * 119.99492 * 31.66515 * 9 7 2 25 25 C 1.54260 * 110.03463 * 112.98618 * 24 9 7 26 26 C 1.54962 * 104.16518 * 95.74762 * 25 24 9 27 27 C 1.54892 * 102.77498 * 37.89175 * 26 25 24 28 28 C 1.53886 * 110.02911 * 230.19877 * 24 9 7 29 29 H 0.97004 * 120.00123 * 4.98658 * 1 2 3 30 30 H 1.08001 * 120.14930 * 359.97438 * 13 12 10 31 31 H 0.96698 * 117.00371 * 180.02562 * 17 15 14 32 32 H 1.07996 * 119.92417 * 179.69994 * 18 14 13 33 33 H 1.08001 * 119.92473 * 180.02562 * 23 19 18 34 34 H 1.08999 * 110.01864 * 351.58869 * 24 9 7 35 35 H 1.09003 * 110.48534 * 214.39977 * 25 24 9 36 36 H 1.09005 * 110.48321 * 337.03377 * 25 24 9 37 37 H 1.08997 * 110.72285 * 279.57868 * 26 25 24 38 38 H 1.09000 * 110.92499 * 156.29235 * 26 25 24 39 39 H 1.09001 * 110.48510 * 203.40715 * 27 26 25 40 40 H 1.08997 * 110.60055 * 80.81505 * 27 26 25 41 41 H 1.08998 * 110.03041 * 359.95320 * 28 24 9 42 42 H 1.08993 * 110.03305 * 121.33404 * 28 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2931 0.0000 0.0000 3 14 2.2272 1.6176 0.0000 4 1 3.6872 1.3463 -0.0006 5 1 1.8685 2.3964 -1.2126 6 1 1.8684 2.3964 1.2125 7 6 2.0270 -1.2713 0.0006 8 1 3.0649 -1.2955 0.2985 9 7 1.4124 -2.3960 -0.3667 10 6 1.7707 -3.5714 0.1869 11 8 1.2491 -4.6028 -0.1867 12 6 2.7976 -3.6054 1.2482 13 6 3.4679 -4.7939 1.5341 14 6 4.4395 -4.8153 2.5325 15 6 5.1599 -6.0685 2.8377 16 8 4.9091 -7.0805 2.2144 17 8 6.0950 -6.0889 3.8072 18 6 4.7269 -3.6499 3.2487 19 6 4.0551 -2.4777 2.9643 20 7 4.3654 -1.2474 3.7267 21 8 3.7269 -0.1274 3.4576 22 8 5.2799 -1.2728 4.6740 23 6 3.0954 -2.4475 1.9721 24 6 0.3477 -2.3542 -1.3721 25 6 0.8038 -3.0786 -2.6554 26 6 0.2326 -4.5113 -2.5055 27 6 -1.1474 -4.2627 -1.8476 28 6 -0.8923 -3.1069 -0.8583 29 1 -0.4850 0.8369 -0.0730 30 1 3.2383 -5.6927 0.9812 31 1 6.5399 -6.9318 3.9704 32 1 5.4763 -3.6664 4.0261 33 1 2.5741 -1.5270 1.7546 34 1 0.0891 -1.3199 -1.5990 35 1 0.3865 -2.5920 -3.5370 36 1 1.8920 -3.1048 -2.7123 37 1 0.8675 -5.1135 -1.8556 38 1 0.1163 -4.9878 -3.4789 39 1 -1.4824 -5.1532 -1.3157 40 1 -1.8821 -3.9682 -2.5970 41 1 -0.7014 -3.5040 0.1387 42 1 -1.7523 -2.4377 -0.8350 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738427822.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:52 Heat of formation + Delta-G solvation = -53.525763 kcal Electronic energy + Delta-G solvation = -31685.488531 eV Core-core repulsion = 27214.935849 eV Total energy + Delta-G solvation = -4470.552682 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.16432 -41.25685 -40.56659 -39.18016 -37.43684 -37.21437 -36.56325 -35.61906 -34.01995 -33.14864 -32.75956 -29.42899 -28.87009 -27.84353 -26.93505 -25.97671 -24.74834 -22.50345 -22.16610 -21.35610 -20.77653 -20.12688 -19.50647 -18.94365 -18.42525 -18.08869 -17.70748 -17.25428 -17.03032 -16.86205 -16.77061 -16.28294 -16.24272 -15.85910 -15.64321 -15.06959 -14.66276 -14.44762 -14.22123 -13.95646 -13.67695 -13.40380 -13.25335 -12.98116 -12.85498 -12.68295 -12.60234 -12.47173 -12.37240 -12.08952 -11.97188 -11.91238 -11.80852 -11.79016 -11.70456 -11.68165 -11.35896 -10.86819 -10.84046 -10.50033 -10.17953 -9.64484 -8.55175 -5.94487 -1.87767 -0.83024 -0.24787 -0.08266 1.05296 1.36696 1.48138 1.54368 1.72645 1.88116 2.21776 2.44266 2.70382 2.87744 3.24046 3.34593 3.48993 3.67081 3.81370 3.93429 4.00734 4.08317 4.22342 4.34729 4.51465 4.52595 4.66854 4.68880 4.84537 4.88282 4.93767 4.98968 5.02075 5.06243 5.11363 5.21391 5.23571 5.29866 5.43371 5.51325 5.54868 5.65018 5.70551 5.83632 6.31292 6.84776 6.86337 7.55255 8.02312 8.38416 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.008814 B = 0.005398 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3175.825164 B = 5185.557837 C = 7928.087345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.040 3.960 3 Si 0.959 3.041 4 H -0.264 1.264 5 H -0.265 1.265 6 H -0.274 1.274 7 C -0.413 4.413 8 H 0.104 0.896 9 N -0.392 5.392 10 C 0.462 3.538 11 O -0.597 6.597 12 C -0.113 4.113 13 C 0.041 3.959 14 C -0.135 4.135 15 C 0.551 3.449 16 O -0.530 6.530 17 O -0.494 6.494 18 C 0.025 3.975 19 C -0.038 4.038 20 N -0.010 5.010 21 O -0.221 6.221 22 O -0.145 6.145 23 C -0.012 4.012 24 C 0.138 3.862 25 C -0.126 4.126 26 C -0.126 4.126 27 C -0.103 4.103 28 C -0.101 4.101 29 H 0.291 0.709 30 H 0.160 0.840 31 H 0.442 0.558 32 H 0.193 0.807 33 H 0.198 0.802 34 H 0.094 0.906 35 H 0.074 0.926 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.068 0.932 41 H 0.038 0.962 42 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.595 -6.050 2.297 9.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.177 4.177 3 Si 0.782 3.218 4 H -0.188 1.188 5 H -0.190 1.190 6 H -0.200 1.200 7 C -0.540 4.540 8 H 0.121 0.879 9 N -0.104 5.104 10 C 0.254 3.746 11 O -0.486 6.486 12 C -0.118 4.118 13 C 0.021 3.979 14 C -0.138 4.138 15 C 0.395 3.605 16 O -0.421 6.421 17 O -0.308 6.308 18 C 0.005 3.995 19 C -0.125 4.125 20 N 0.467 4.533 21 O -0.402 6.402 22 O -0.350 6.350 23 C -0.032 4.032 24 C 0.035 3.965 25 C -0.164 4.164 26 C -0.163 4.163 27 C -0.140 4.140 28 C -0.139 4.139 29 H 0.103 0.897 30 H 0.177 0.823 31 H 0.305 0.695 32 H 0.211 0.789 33 H 0.214 0.786 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.106 0.894 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.057 0.943 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 5.620 -6.720 1.507 8.889 hybrid contribution 0.507 1.024 0.400 1.210 sum 6.127 -5.696 1.906 8.580 Atomic orbital electron populations 1.68975 1.08678 1.31125 1.36203 1.27406 0.95068 1.01888 0.93330 0.85377 0.79767 0.78093 0.78535 1.18754 1.18975 1.19962 1.20674 0.95335 0.85640 1.52353 0.87857 1.42622 1.30909 1.05534 1.31325 1.17978 0.86963 0.85093 0.84611 1.90468 1.59667 1.33573 1.64928 1.19978 0.99732 0.92386 0.99658 1.21812 0.87183 0.98083 0.90784 1.18732 1.01666 0.92186 1.01178 1.19992 0.77132 0.86491 0.76851 1.90944 1.65021 1.35390 1.50763 1.84485 1.49671 1.45290 1.51402 1.21551 0.94808 0.87346 0.95826 1.20291 1.07297 0.84071 1.00804 1.50549 0.98965 1.04010 0.99732 1.96357 1.52098 1.17078 1.74678 1.96189 1.23268 1.93686 1.21808 1.23373 0.89829 1.03464 0.86510 1.21810 0.86876 1.00604 0.87204 1.22699 0.99581 0.97000 0.97106 1.22806 0.97213 0.96517 0.99758 1.22125 0.97274 0.97149 0.97495 1.22068 0.96655 0.96377 0.98793 0.89693 0.82289 0.69456 0.78944 0.78551 0.88787 0.90786 0.93502 0.89375 0.92062 0.92741 0.91328 0.94275 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -37.41 11.29 23.26 0.26 -37.15 16 2 C 0.04 1.77 5.04 87.30 0.44 2.21 16 3 Si 0.96 36.88 29.68 68.60 2.04 38.92 16 4 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 5 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 6 H -0.27 -10.80 7.11 99.48 0.71 -10.09 16 7 C -0.41 -18.65 6.61 86.70 0.57 -18.07 16 8 H 0.10 4.61 5.46 -2.91 -0.02 4.60 16 9 N -0.39 -17.55 2.42 -607.92 -1.47 -19.02 16 10 C 0.46 20.09 6.57 86.75 0.57 20.66 16 11 O -0.60 -26.82 10.72 -3.60 -0.04 -26.86 16 12 C -0.11 -4.26 5.68 -20.12 -0.11 -4.37 16 13 C 0.04 1.30 9.13 22.82 0.21 1.51 16 14 C -0.14 -3.51 5.87 -20.13 -0.12 -3.62 16 15 C 0.55 12.25 8.27 70.33 0.58 12.83 16 16 O -0.53 -14.89 17.13 19.93 0.34 -14.54 16 17 O -0.49 -6.73 12.67 -56.14 -0.71 -7.44 16 18 C 0.02 0.62 9.14 22.60 0.21 0.83 16 19 C -0.04 -1.25 6.87 36.30 0.25 -1.00 16 20 N -0.01 -0.36 4.98 -46.65 -0.23 -0.59 16 21 O -0.22 -9.12 19.13 3.53 0.07 -9.05 16 22 O -0.14 -4.75 19.13 3.52 0.07 -4.68 16 23 C -0.01 -0.46 7.30 22.60 0.16 -0.29 16 24 C 0.14 5.88 2.65 45.72 0.12 6.00 16 25 C -0.13 -4.70 6.22 31.69 0.20 -4.51 16 26 C -0.13 -4.48 6.25 31.91 0.20 -4.28 16 27 C -0.10 -3.59 6.60 31.67 0.21 -3.38 16 28 C -0.10 -4.13 5.84 31.32 0.18 -3.95 16 29 H 0.29 12.27 8.27 -92.70 -0.77 11.50 16 30 H 0.16 5.15 7.36 -2.91 -0.02 5.13 16 31 H 0.44 1.63 9.11 -74.06 -0.67 0.95 16 32 H 0.19 3.78 7.10 -2.91 -0.02 3.75 16 33 H 0.20 8.41 4.05 -2.91 -0.01 8.40 16 34 H 0.09 4.27 5.55 -2.39 -0.01 4.25 16 35 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 36 H 0.05 1.84 8.04 -2.38 -0.02 1.82 16 37 H 0.09 3.60 5.03 -4.55 -0.02 3.58 16 38 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.04 1.80 6.49 -2.39 -0.02 1.79 16 42 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -56.91 353.70 4.44 -52.48 By element: Atomic # 1 Polarization: 26.93 SS G_CDS: 0.44 Total: 27.37 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 3.67 Total: 0.58 kcal Atomic # 7 Polarization: -55.33 SS G_CDS: -1.44 Total: -56.77 kcal Atomic # 8 Polarization: -62.30 SS G_CDS: -0.27 Total: -62.57 kcal Atomic # 14 Polarization: 36.88 SS G_CDS: 2.04 Total: 38.92 kcal Total: -56.91 4.44 -52.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738427822.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.049 kcal (2) G-P(sol) polarization free energy of solvation -56.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds