Wall clock time and date at job start Wed Apr 1 2020 05:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99828 * 2 1 4 4 H 1.48491 * 109.47204 * 270.00302 * 3 2 1 5 5 H 1.48503 * 109.46896 * 30.00353 * 3 2 1 6 6 H 1.48507 * 109.46827 * 150.00091 * 3 2 1 7 7 C 1.38954 * 120.00574 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00145 * 201.12925 * 7 2 1 9 9 N 1.37095 * 119.99390 * 21.12595 * 7 2 1 10 10 C 1.46504 * 120.00221 * 16.26942 * 9 7 2 11 11 C 1.50706 * 109.46590 * 264.13918 * 10 9 7 12 12 O 1.20825 * 119.99916 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99678 * 179.97438 * 11 10 9 14 14 C 1.34780 * 119.99968 * 196.26192 * 9 7 2 15 15 O 1.21300 * 119.99920 * 359.97438 * 14 9 7 16 16 C 1.50702 * 120.00265 * 180.02562 * 14 9 7 17 17 C 1.52993 * 109.47096 * 179.97438 * 16 14 9 18 18 C 1.53002 * 109.47154 * 179.97438 * 17 16 14 19 19 S 1.81404 * 109.47272 * 180.02562 * 18 17 16 20 20 O 1.42098 * 110.53796 * 291.62668 * 19 18 17 21 21 O 1.42090 * 110.54417 * 68.37505 * 19 18 17 22 22 N 1.65602 * 104.44896 * 180.02562 * 19 18 17 23 23 C 1.47021 * 125.64398 * 269.68774 * 22 19 18 24 24 C 1.54315 * 107.27477 * 180.96818 * 23 22 19 25 25 C 1.55159 * 102.86172 * 22.52934 * 24 23 22 26 26 C 1.47415 * 125.65040 * 89.99659 * 22 19 18 27 27 H 0.96996 * 120.00356 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.47460 * 24.13615 * 10 9 7 29 29 H 1.09005 * 109.47214 * 144.14409 * 10 9 7 30 30 H 0.96702 * 116.99982 * 179.97438 * 13 11 10 31 31 H 1.08998 * 109.47002 * 60.00117 * 16 14 9 32 32 H 1.08994 * 109.46977 * 300.00158 * 16 14 9 33 33 H 1.08994 * 109.47569 * 300.00080 * 17 16 14 34 34 H 1.09007 * 109.46988 * 60.00095 * 17 16 14 35 35 H 1.09004 * 109.47068 * 300.00501 * 18 17 16 36 36 H 1.08998 * 109.46806 * 60.00486 * 18 17 16 37 37 H 1.08994 * 109.88434 * 300.51460 * 23 22 19 38 38 H 1.09007 * 109.88099 * 61.68013 * 23 22 19 39 39 H 1.09000 * 110.92316 * 264.11639 * 24 23 22 40 40 H 1.09002 * 110.58927 * 140.78833 * 24 23 22 41 41 H 1.09002 * 111.00051 * 206.23107 * 25 24 23 42 42 H 1.09001 * 111.00582 * 82.37509 * 25 24 23 43 43 H 1.08995 * 110.36975 * 274.67361 * 26 22 19 44 44 H 1.09003 * 110.36860 * 36.88708 * 26 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2033 -0.0005 8 1 3.0345 -1.2348 0.3366 9 7 1.3926 -2.3505 -0.4290 10 6 0.1549 -2.2697 -1.2086 11 6 -1.0289 -2.4273 -0.2893 12 8 -0.8563 -2.5899 0.8954 13 8 -2.2749 -2.3860 -0.7867 14 6 1.9254 -3.5526 -0.1331 15 8 2.9505 -3.6195 0.5119 16 6 1.2482 -4.8137 -0.6045 17 6 2.0521 -6.0291 -0.1384 18 6 1.3643 -7.3094 -0.6165 19 16 2.3170 -8.7505 -0.0632 20 8 3.5644 -8.8136 -0.7409 21 8 2.2432 -8.8846 1.3495 22 7 1.4719 -10.0517 -0.6422 23 6 0.4007 -10.7634 0.0702 24 6 -0.0717 -11.9136 -0.8436 25 6 1.1488 -12.1385 -1.7748 26 6 1.6735 -10.6921 -1.9546 27 1 -0.4850 0.8400 0.0004 28 1 0.1017 -1.3018 -1.7068 29 1 0.1433 -3.0638 -1.9553 30 1 -3.0022 -2.4922 -0.1582 31 1 1.1927 -4.8111 -1.6931 32 1 0.2416 -4.8624 -0.1895 33 1 3.0586 -5.9801 -0.5538 34 1 2.1081 -6.0319 0.9502 35 1 0.3578 -7.3582 -0.2007 36 1 1.3080 -7.3068 -1.7050 37 1 0.7831 -11.1658 1.0082 38 1 -0.4288 -10.0840 0.2666 39 1 -0.9477 -11.6175 -1.4208 40 1 -0.2794 -12.8086 -0.2570 41 1 0.8388 -12.5632 -2.7296 42 1 1.8968 -12.7684 -1.2932 43 1 1.0995 -10.1731 -2.7222 44 1 2.7321 -10.7003 -2.2141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739077280.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:54 Heat of formation + Delta-G solvation = -187.388688 kcal Electronic energy + Delta-G solvation = -29274.800603 eV Core-core repulsion = 24933.887140 eV Total energy + Delta-G solvation = -4340.913463 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.128 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -39.54898 -38.63013 -38.29261 -37.16420 -35.99059 -35.45625 -34.75606 -34.09743 -31.81105 -31.26252 -29.32331 -28.43430 -27.63245 -24.80670 -23.02771 -22.01892 -21.57145 -21.14388 -19.09871 -18.94061 -17.80116 -17.25902 -17.05784 -16.88500 -16.44224 -16.11070 -15.83788 -15.70463 -15.00419 -14.62009 -14.50813 -14.13902 -14.10770 -14.02857 -13.64650 -13.44817 -13.00396 -12.82693 -12.55797 -12.29745 -12.17185 -12.09017 -11.87783 -11.82564 -11.74455 -11.67531 -11.56757 -11.50437 -11.41617 -11.09240 -11.01607 -10.73711 -10.67793 -10.47407 -10.40017 -10.31476 -9.71344 -9.25329 -9.10242 -8.57853 -7.97469 -6.49765 -3.93923 0.11346 2.51653 3.11273 3.22114 3.27738 3.36653 3.57896 3.73571 3.88910 4.01759 4.14320 4.18821 4.37258 4.47662 4.56382 4.77012 4.80111 4.92320 5.01509 5.10168 5.16650 5.20242 5.37423 5.46169 5.46449 5.50126 5.56537 5.59697 5.65431 5.74226 5.76735 5.87225 5.98302 6.10348 6.21479 6.31005 6.39284 6.52462 7.41269 7.50732 7.92580 8.31566 8.94921 9.03847 9.25128 9.77773 10.59255 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.002525 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.516695 B =11085.069568 C =11919.273604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.028 3.972 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.109 0.891 9 N -0.433 5.433 10 C 0.145 3.855 11 C 0.488 3.512 12 O -0.503 6.503 13 O -0.535 6.535 14 C 0.458 3.542 15 O -0.574 6.574 16 C -0.126 4.126 17 C -0.092 4.092 18 C -0.624 4.624 19 S 2.624 3.376 20 O -0.951 6.951 21 O -0.950 6.950 22 N -1.018 6.018 23 C 0.117 3.883 24 C -0.129 4.129 25 C -0.130 4.130 26 C 0.112 3.888 27 H 0.271 0.729 28 H 0.130 0.870 29 H 0.077 0.923 30 H 0.392 0.608 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.131 0.869 36 H 0.131 0.869 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.238 -19.731 -8.640 22.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.174 4.174 3 Si 0.757 3.243 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.127 0.873 9 N -0.153 5.153 10 C 0.018 3.982 11 C 0.328 3.672 12 O -0.388 6.388 13 O -0.346 6.346 14 C 0.247 3.753 15 O -0.457 6.457 16 C -0.168 4.168 17 C -0.132 4.132 18 C -0.754 4.754 19 S 2.720 3.280 20 O -0.942 6.942 21 O -0.940 6.940 22 N -0.856 5.856 23 C -0.008 4.008 24 C -0.168 4.168 25 C -0.169 4.169 26 C -0.013 4.013 27 H 0.081 0.919 28 H 0.148 0.852 29 H 0.095 0.905 30 H 0.248 0.752 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.095 0.905 40 H 0.099 0.901 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.622 -19.583 -7.703 21.545 hybrid contribution -1.199 1.296 0.153 1.772 sum -5.821 -18.287 -7.550 20.623 Atomic orbital electron populations 1.69784 1.06053 1.27932 1.48605 1.25242 0.95339 1.00027 0.96791 0.85842 0.79529 0.80540 0.78342 1.20259 1.21100 1.19314 1.19760 0.97739 0.83291 1.42400 0.87322 1.43469 1.19588 1.05508 1.46689 1.20706 0.81378 1.04858 0.91256 1.23878 0.83159 0.70886 0.89259 1.90625 1.85577 1.44912 1.17721 1.84525 1.17414 1.86364 1.46280 1.20010 0.87474 0.84202 0.83609 1.90546 1.26029 1.86474 1.42649 1.21536 1.00153 0.93434 1.01648 1.21008 0.99399 0.89937 1.02827 1.30665 1.15097 1.17127 1.12481 1.04687 0.74524 0.74542 0.74256 1.93583 1.38721 1.85776 1.76071 1.93592 1.86614 1.85088 1.28730 1.58788 1.52686 1.46535 1.27562 1.21727 0.89152 0.94175 0.95744 1.22641 0.98205 0.98132 0.97851 1.22765 0.97753 0.96053 1.00306 1.22065 1.02009 0.93086 0.84103 0.91857 0.85220 0.90483 0.75156 0.89919 0.90060 0.89577 0.89619 0.85105 0.85032 0.90884 0.91596 0.90524 0.90148 0.89949 0.90547 0.91517 0.89716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.90 9.25 55.50 0.51 -22.39 16 2 C 0.03 0.73 4.89 -17.47 -0.09 0.65 16 3 Si 0.93 20.42 29.60 -169.99 -5.03 15.39 16 4 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.30 -8.32 9.35 -14.93 -0.14 -8.46 16 8 H 0.11 3.13 7.37 -52.49 -0.39 2.74 16 9 N -0.43 -10.74 2.18 -116.09 -0.25 -10.99 16 10 C 0.14 3.04 4.97 -5.19 -0.03 3.01 16 11 C 0.49 10.46 5.87 36.01 0.21 10.68 16 12 O -0.50 -12.83 16.81 -18.75 -0.32 -13.15 16 13 O -0.53 -9.16 13.42 -39.25 -0.53 -9.69 16 14 C 0.46 10.99 7.42 -10.98 -0.08 10.91 16 15 O -0.57 -15.77 15.62 5.54 0.09 -15.68 16 16 C -0.13 -2.22 4.31 -27.89 -0.12 -2.34 16 17 C -0.09 -1.48 4.51 -26.73 -0.12 -1.61 16 18 C -0.62 -6.97 6.18 37.16 0.23 -6.74 16 19 S 2.62 33.19 5.65 -107.50 -0.61 32.58 16 20 O -0.95 -14.70 17.27 -57.54 -0.99 -15.70 16 21 O -0.95 -15.23 17.60 -57.54 -1.01 -16.25 16 22 N -1.02 -9.62 3.62 -111.43 -0.40 -10.02 16 23 C 0.12 0.91 6.89 -3.07 -0.02 0.89 16 24 C -0.13 -0.68 6.95 -24.90 -0.17 -0.86 16 25 C -0.13 -0.71 7.08 -24.58 -0.17 -0.89 16 26 C 0.11 0.83 7.07 -2.53 -0.02 0.81 16 27 H 0.27 6.72 8.31 -40.82 -0.34 6.39 16 28 H 0.13 2.84 6.34 -51.93 -0.33 2.51 16 29 H 0.08 1.27 6.69 -51.93 -0.35 0.92 16 30 H 0.39 5.11 9.10 45.56 0.41 5.53 16 31 H 0.08 1.18 7.42 -51.93 -0.39 0.80 16 32 H 0.08 1.39 7.52 -51.93 -0.39 1.00 16 33 H 0.09 1.41 8.10 -51.93 -0.42 0.99 16 34 H 0.09 1.50 8.10 -51.93 -0.42 1.08 16 35 H 0.13 1.21 8.14 -51.92 -0.42 0.79 16 36 H 0.13 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.68 7.66 -51.93 -0.40 0.28 16 LS Contribution 377.73 15.07 5.69 5.69 Total: -1.00 -38.49 377.73 -8.97 -47.46 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.60 Total: 6.69 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: -0.52 Total: 6.06 kcal Atomic # 7 Polarization: -43.26 SS G_CDS: -0.14 Total: -43.40 kcal Atomic # 8 Polarization: -67.70 SS G_CDS: -2.76 Total: -70.47 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Atomic # 16 Polarization: 33.19 SS G_CDS: -0.61 Total: 32.58 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -38.49 -8.97 -47.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077280.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.926 kcal (2) G-P(sol) polarization free energy of solvation -38.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.463 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds