Wall clock time and date at job start Wed Apr 1 2020 05:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86807 * 119.99828 * 2 1 4 4 H 1.48491 * 109.47204 * 270.00302 * 3 2 1 5 5 H 1.48503 * 109.46896 * 30.00353 * 3 2 1 6 6 H 1.48507 * 109.46827 * 150.00091 * 3 2 1 7 7 C 1.38954 * 120.00574 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00145 * 201.12925 * 7 2 1 9 9 N 1.37095 * 119.99390 * 21.12595 * 7 2 1 10 10 C 1.46504 * 120.00221 * 16.26942 * 9 7 2 11 11 C 1.50706 * 109.46590 * 264.13918 * 10 9 7 12 12 O 1.20825 * 119.99916 * 0.02562 * 11 10 9 13 13 O 1.34227 * 119.99678 * 179.97438 * 11 10 9 14 14 C 1.34780 * 119.99968 * 196.26192 * 9 7 2 15 15 O 1.21300 * 119.99920 * 359.97438 * 14 9 7 16 16 C 1.50702 * 120.00265 * 180.02562 * 14 9 7 17 17 C 1.52993 * 109.47096 * 179.97438 * 16 14 9 18 18 C 1.53002 * 109.47154 * 179.97438 * 17 16 14 19 19 S 1.81404 * 109.47272 * 180.02562 * 18 17 16 20 20 O 1.42098 * 110.53796 * 291.62668 * 19 18 17 21 21 O 1.42090 * 110.54417 * 68.37505 * 19 18 17 22 22 N 1.65602 * 104.44896 * 180.02562 * 19 18 17 23 23 C 1.47021 * 125.64398 * 269.68774 * 22 19 18 24 24 C 1.54315 * 107.27477 * 180.96818 * 23 22 19 25 25 C 1.55159 * 102.86172 * 22.52934 * 24 23 22 26 26 C 1.47415 * 125.65040 * 89.99659 * 22 19 18 27 27 H 0.96996 * 120.00356 * 359.97438 * 1 2 3 28 28 H 1.08992 * 109.47460 * 24.13615 * 10 9 7 29 29 H 1.09005 * 109.47214 * 144.14409 * 10 9 7 30 30 H 0.96702 * 116.99982 * 179.97438 * 13 11 10 31 31 H 1.08998 * 109.47002 * 60.00117 * 16 14 9 32 32 H 1.08994 * 109.46977 * 300.00158 * 16 14 9 33 33 H 1.08994 * 109.47569 * 300.00080 * 17 16 14 34 34 H 1.09007 * 109.46988 * 60.00095 * 17 16 14 35 35 H 1.09004 * 109.47068 * 300.00501 * 18 17 16 36 36 H 1.08998 * 109.46806 * 60.00486 * 18 17 16 37 37 H 1.08994 * 109.88434 * 300.51460 * 23 22 19 38 38 H 1.09007 * 109.88099 * 61.68013 * 23 22 19 39 39 H 1.09000 * 110.92316 * 264.11639 * 24 23 22 40 40 H 1.09002 * 110.58927 * 140.78833 * 24 23 22 41 41 H 1.09002 * 111.00051 * 206.23107 * 25 24 23 42 42 H 1.09001 * 111.00582 * 82.37509 * 25 24 23 43 43 H 1.08995 * 110.36975 * 274.67361 * 26 22 19 44 44 H 1.09003 * 110.36860 * 36.88708 * 26 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 2.4955 2.0465 -1.4000 5 1 1.4455 2.6527 0.7001 6 1 3.5457 1.4402 0.7001 7 6 2.0090 -1.2033 -0.0005 8 1 3.0345 -1.2348 0.3366 9 7 1.3926 -2.3505 -0.4290 10 6 0.1549 -2.2697 -1.2086 11 6 -1.0289 -2.4273 -0.2893 12 8 -0.8563 -2.5899 0.8954 13 8 -2.2749 -2.3860 -0.7867 14 6 1.9254 -3.5526 -0.1331 15 8 2.9505 -3.6195 0.5119 16 6 1.2482 -4.8137 -0.6045 17 6 2.0521 -6.0291 -0.1384 18 6 1.3643 -7.3094 -0.6165 19 16 2.3170 -8.7505 -0.0632 20 8 3.5644 -8.8136 -0.7409 21 8 2.2432 -8.8846 1.3495 22 7 1.4719 -10.0517 -0.6422 23 6 0.4007 -10.7634 0.0702 24 6 -0.0717 -11.9136 -0.8436 25 6 1.1488 -12.1385 -1.7748 26 6 1.6735 -10.6921 -1.9546 27 1 -0.4850 0.8400 0.0004 28 1 0.1017 -1.3018 -1.7068 29 1 0.1433 -3.0638 -1.9553 30 1 -3.0022 -2.4922 -0.1582 31 1 1.1927 -4.8111 -1.6931 32 1 0.2416 -4.8624 -0.1895 33 1 3.0586 -5.9801 -0.5538 34 1 2.1081 -6.0319 0.9502 35 1 0.3578 -7.3582 -0.2007 36 1 1.3080 -7.3068 -1.7050 37 1 0.7831 -11.1658 1.0082 38 1 -0.4288 -10.0840 0.2666 39 1 -0.9477 -11.6175 -1.4208 40 1 -0.2794 -12.8086 -0.2570 41 1 0.8388 -12.5632 -2.7296 42 1 1.8968 -12.7684 -1.2932 43 1 1.0995 -10.1731 -2.7222 44 1 2.7321 -10.7003 -2.2141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739077280.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:53 Heat of formation + Delta-G solvation = -217.676412 kcal Electronic energy + Delta-G solvation = -29276.113977 eV Core-core repulsion = 24933.887140 eV Total energy + Delta-G solvation = -4342.226837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 348.128 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.26447 -40.02283 -39.18646 -38.27155 -37.15305 -37.08126 -36.42235 -35.55925 -33.74939 -31.83898 -29.91371 -29.84107 -29.25468 -26.60479 -23.91748 -23.15578 -22.72457 -22.03063 -20.66868 -19.92776 -19.03948 -18.73483 -18.68716 -18.20524 -17.57965 -17.53051 -17.15904 -16.76560 -16.32619 -16.23541 -16.17733 -15.87863 -15.01800 -14.83616 -14.61621 -14.51793 -14.18445 -13.86574 -13.77731 -13.52408 -13.46044 -13.42681 -13.31019 -13.21976 -13.11800 -12.92568 -12.67417 -12.60918 -12.38774 -12.19884 -12.15279 -12.09710 -11.99288 -11.92898 -11.72008 -11.52644 -11.48971 -10.96564 -10.48391 -9.92254 -9.88660 -8.45962 -5.97305 -0.85752 1.35241 1.41791 1.53307 1.66044 1.69129 1.86775 2.24290 2.54185 2.74801 2.94495 3.03338 3.09390 3.46211 3.66392 3.71541 3.90324 3.92510 4.09559 4.16091 4.21991 4.35780 4.42431 4.57014 4.62638 4.63387 4.66123 4.76250 4.89924 4.94897 4.95559 5.03636 5.04325 5.07940 5.12155 5.22621 5.40288 5.44279 5.53126 5.96226 5.99530 6.37306 7.09231 7.29174 7.45769 7.90884 8.60535 Molecular weight = 348.13amu Principal moments of inertia in cm(-1) A = 0.019762 B = 0.002525 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.516695 B =11085.069568 C =11919.273604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.001 3.999 3 Si 0.991 3.009 4 H -0.257 1.257 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.343 4.343 8 H 0.076 0.924 9 N -0.446 5.446 10 C 0.139 3.861 11 C 0.497 3.503 12 O -0.552 6.552 13 O -0.517 6.517 14 C 0.441 3.559 15 O -0.626 6.626 16 C -0.115 4.115 17 C -0.099 4.099 18 C -0.604 4.604 19 S 2.630 3.370 20 O -0.988 6.988 21 O -0.995 6.995 22 N -1.015 6.015 23 C 0.104 3.896 24 C -0.121 4.121 25 C -0.128 4.128 26 C 0.101 3.899 27 H 0.275 0.725 28 H 0.120 0.880 29 H 0.130 0.870 30 H 0.414 0.586 31 H 0.128 0.872 32 H 0.093 0.907 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.158 0.842 36 H 0.172 0.828 37 H 0.057 0.943 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.090 0.910 41 H 0.106 0.894 42 H 0.067 0.933 43 H 0.093 0.907 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.998 -20.469 -11.328 25.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.201 4.201 3 Si 0.815 3.185 4 H -0.182 1.182 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.470 4.470 8 H 0.094 0.906 9 N -0.165 5.165 10 C 0.014 3.986 11 C 0.339 3.661 12 O -0.441 6.441 13 O -0.329 6.329 14 C 0.232 3.768 15 O -0.513 6.513 16 C -0.156 4.156 17 C -0.139 4.139 18 C -0.735 4.735 19 S 2.729 3.271 20 O -0.978 6.978 21 O -0.985 6.985 22 N -0.855 5.855 23 C -0.021 4.021 24 C -0.160 4.160 25 C -0.167 4.167 26 C -0.023 4.023 27 H 0.085 0.915 28 H 0.138 0.862 29 H 0.147 0.853 30 H 0.273 0.727 31 H 0.146 0.854 32 H 0.111 0.889 33 H 0.093 0.907 34 H 0.076 0.924 35 H 0.176 0.824 36 H 0.190 0.810 37 H 0.075 0.925 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.109 0.891 41 H 0.125 0.875 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.434 -20.338 -10.425 24.033 hybrid contribution -0.436 1.520 0.979 1.859 sum -7.870 -18.819 -9.446 22.479 Atomic orbital electron populations 1.69859 1.06658 1.28730 1.47836 1.25922 0.96176 1.02227 0.95741 0.84970 0.77648 0.76801 0.79083 1.18206 1.20568 1.20676 1.19617 0.97189 0.85426 1.44796 0.90617 1.43650 1.20792 1.05156 1.46873 1.20927 0.79826 1.06351 0.91501 1.23853 0.84311 0.69565 0.88366 1.90622 1.86468 1.47321 1.19683 1.84449 1.16670 1.85404 1.46359 1.21183 0.86980 0.85903 0.82771 1.90504 1.28422 1.87464 1.44930 1.21543 0.99690 0.90124 1.04268 1.20962 0.99586 0.91997 1.01353 1.30490 1.15196 1.12815 1.15032 1.04122 0.74398 0.75491 0.73129 1.93531 1.41361 1.86625 1.76314 1.93532 1.87285 1.86060 1.31642 1.58469 1.52814 1.45620 1.28630 1.21997 0.88936 0.95393 0.95762 1.22659 0.98501 0.97396 0.97457 1.22801 0.97612 0.94709 1.01538 1.22372 1.01947 0.94512 0.83514 0.91502 0.86180 0.85286 0.72684 0.85431 0.88889 0.90661 0.92395 0.82353 0.81040 0.92490 0.90152 0.88667 0.89103 0.87525 0.91447 0.88871 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.61 9.25 21.66 0.20 -45.41 16 2 C 0.00 0.05 4.89 84.93 0.42 0.46 16 3 Si 0.99 42.01 29.60 68.60 2.03 44.04 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 5 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 6 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 7 C -0.34 -19.26 9.35 84.04 0.79 -18.48 16 8 H 0.08 4.64 7.37 -2.91 -0.02 4.62 16 9 N -0.45 -22.24 2.18 -639.56 -1.39 -23.64 16 10 C 0.14 5.57 4.97 85.63 0.43 6.00 16 11 C 0.50 20.29 5.87 71.24 0.42 20.71 16 12 O -0.55 -27.82 16.81 21.97 0.37 -27.45 16 13 O -0.52 -15.96 13.42 -51.39 -0.69 -16.65 16 14 C 0.44 21.43 7.42 87.66 0.65 22.08 16 15 O -0.63 -36.21 15.62 -3.09 -0.05 -36.26 16 16 C -0.12 -3.83 4.31 29.85 0.13 -3.71 16 17 C -0.10 -3.14 4.51 30.59 0.14 -3.01 16 18 C -0.60 -11.92 6.18 71.98 0.44 -11.48 16 19 S 2.63 66.05 5.65 -56.49 -0.32 65.73 16 20 O -0.99 -31.18 17.27 -127.65 -2.21 -33.38 16 21 O -0.99 -33.13 17.60 -127.65 -2.25 -35.38 16 22 N -1.02 -17.69 3.62 -506.46 -1.83 -19.52 16 23 C 0.10 1.44 6.89 86.73 0.60 2.04 16 24 C -0.12 -0.92 6.95 31.78 0.22 -0.70 16 25 C -0.13 -1.07 7.08 31.99 0.23 -0.85 16 26 C 0.10 1.26 7.07 86.86 0.61 1.88 16 27 H 0.28 13.31 8.31 -92.71 -0.77 12.54 16 28 H 0.12 5.06 6.34 -2.39 -0.02 5.05 16 29 H 0.13 3.71 6.69 -2.38 -0.02 3.69 16 30 H 0.41 9.37 9.10 -74.06 -0.67 8.70 16 31 H 0.13 3.06 7.42 -2.39 -0.02 3.05 16 32 H 0.09 2.91 7.52 -2.39 -0.02 2.90 16 33 H 0.07 2.51 8.10 -2.39 -0.02 2.49 16 34 H 0.06 2.12 8.10 -2.38 -0.02 2.10 16 35 H 0.16 2.33 8.14 -2.39 -0.02 2.31 16 36 H 0.17 2.05 8.14 -2.39 -0.02 2.04 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 39 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 40 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 44 H 0.07 1.08 7.66 -2.39 -0.02 1.06 16 Total: -1.00 -89.31 377.73 -0.71 -90.02 By element: Atomic # 1 Polarization: 22.59 SS G_CDS: 0.36 Total: 22.94 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: 5.07 Total: 14.96 kcal Atomic # 7 Polarization: -85.55 SS G_CDS: -3.03 Total: -88.57 kcal Atomic # 8 Polarization: -144.30 SS G_CDS: -4.82 Total: -149.12 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 16 Polarization: 66.05 SS G_CDS: -0.32 Total: 65.73 kcal Total: -89.31 -0.71 -90.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077280.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.655 kcal (2) G-P(sol) polarization free energy of solvation -89.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds