Wall clock time and date at job start Wed Apr 1 2020 05:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00029 * 2 1 4 4 H 1.48501 * 109.46855 * 270.00013 * 3 2 1 5 5 H 1.48493 * 109.47066 * 30.00314 * 3 2 1 6 6 H 1.48502 * 109.46674 * 150.00482 * 3 2 1 7 7 C 1.37878 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99718 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00253 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47309 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00007 * 269.99811 * 10 9 7 12 12 C 1.50697 * 109.47165 * 269.99970 * 11 10 9 13 13 C 1.38229 * 119.61813 * 94.73328 * 12 11 10 14 14 C 1.38627 * 119.16225 * 179.75772 * 13 12 11 15 15 C 1.38673 * 118.41732 * 0.49969 * 14 13 12 16 16 C 1.38175 * 119.16531 * 359.73613 * 15 14 13 17 17 N 1.31850 * 119.62039 * 275.00179 * 12 11 10 18 18 C 1.34778 * 119.99889 * 90.00183 * 10 9 7 19 19 O 1.21274 * 120.00119 * 179.97438 * 18 10 9 20 20 C 1.50701 * 119.99846 * 359.97438 * 18 10 9 21 21 C 1.52997 * 109.46972 * 180.02562 * 20 18 10 22 22 H 1.09000 * 110.54067 * 303.59466 * 21 20 18 23 23 S 1.82372 * 110.61139 * 66.44991 * 21 20 18 24 24 C 1.77245 * 94.48881 * 118.51549 * 23 21 20 25 25 N 1.30278 * 126.28085 * 180.02562 * 24 23 21 26 26 N 1.37065 * 107.44592 * 359.97438 * 24 23 21 27 27 C 1.32207 * 120.27981 * 0.02562 * 26 24 23 28 28 O 1.21263 * 122.87710 * 179.97438 * 27 26 24 29 29 H 0.96997 * 119.99664 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47045 * 59.99693 * 9 7 2 31 31 H 1.08999 * 109.46898 * 299.99673 * 9 7 2 32 32 H 1.09002 * 109.46928 * 30.00154 * 11 10 9 33 33 H 1.08998 * 109.46855 * 150.00273 * 11 10 9 34 34 H 1.08004 * 120.41698 * 359.97393 * 13 12 11 35 35 H 1.08003 * 120.79160 * 180.26419 * 14 13 12 36 36 H 1.08003 * 120.41531 * 179.71281 * 15 14 13 37 37 H 1.07997 * 119.61503 * 179.97438 * 16 15 14 38 38 H 1.09000 * 109.47454 * 59.99723 * 20 18 10 39 39 H 1.09000 * 109.47119 * 299.99741 * 20 18 10 40 40 H 0.96999 * 120.00392 * 179.97438 * 25 24 23 41 41 H 0.96998 * 119.85689 * 179.71976 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2444 -3.2658 1.2678 12 6 5.6679 -3.0289 1.7022 13 6 5.9522 -1.9987 2.5788 14 6 7.2642 -1.7925 2.9761 15 6 8.2471 -2.6274 2.4663 16 6 7.8879 -3.6335 1.5900 17 7 6.6284 -3.8035 1.2376 18 6 4.2239 -3.2110 -1.1682 19 8 4.6286 -4.3542 -1.1681 20 6 3.9718 -2.5010 -2.4733 21 6 4.3022 -3.4388 -3.6361 22 1 5.3298 -3.7944 -3.5605 23 16 3.1387 -4.8424 -3.6795 24 6 2.5010 -4.4445 -5.2847 25 7 1.5809 -5.1004 -5.9331 26 7 3.1527 -3.3194 -5.7184 27 6 4.0711 -2.7466 -4.9592 28 8 4.6763 -1.7512 -5.2960 29 1 -0.4849 0.8400 0.0004 30 1 3.8752 -0.6805 0.8888 31 1 3.8745 -0.6802 -0.8912 32 1 3.5639 -2.8814 2.0276 33 1 4.0774 -4.3350 1.1377 34 1 5.1616 -1.3646 2.9522 35 1 7.5154 -0.9980 3.6632 36 1 9.2803 -2.4928 2.7505 37 1 8.6475 -4.2877 1.1882 38 1 4.6016 -1.6133 -2.5317 39 1 2.9236 -2.2072 -2.5305 40 1 1.2987 -4.8001 -6.8111 41 1 2.9423 -2.9444 -6.5879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742638417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:41 Heat of formation + Delta-G solvation = 5.307880 kcal Electronic energy + Delta-G solvation = -28086.403648 eV Core-core repulsion = 24093.447806 eV Total energy + Delta-G solvation = -3992.955842 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.94019 -40.17725 -39.06533 -37.12855 -35.41910 -33.62957 -32.91613 -32.36029 -32.25859 -31.43676 -28.31646 -27.17827 -25.19885 -23.92669 -23.42492 -22.55800 -22.04282 -20.94889 -18.76602 -18.24557 -18.07846 -17.23558 -16.75039 -16.50570 -16.20382 -16.03658 -15.82883 -15.48400 -15.38805 -14.87388 -14.53225 -14.20264 -13.81097 -13.45805 -13.15592 -13.02047 -12.91850 -12.74247 -12.59352 -12.39530 -12.04446 -11.83459 -11.58237 -11.49189 -11.06346 -11.00195 -10.79754 -10.65974 -10.39699 -9.89620 -9.78853 -9.73854 -9.72587 -9.33364 -9.24950 -8.88477 -8.79259 -7.98749 -7.92862 -6.28857 -4.31835 0.99784 1.16748 1.28805 1.39661 1.70755 2.47569 2.72296 3.11548 3.18154 3.18598 3.21896 3.51543 3.82762 4.12411 4.19279 4.48563 4.62603 4.85032 4.90542 4.99369 5.03377 5.05096 5.13404 5.18308 5.27268 5.61743 5.66529 5.73616 5.87855 5.89449 5.99518 6.14383 6.23461 6.27135 6.32071 6.43411 6.54303 6.79826 7.14333 7.26734 7.34061 7.74423 7.96011 8.19823 8.29669 8.70465 8.80561 9.29716 10.83230 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.008035 B = 0.004606 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.782927 B = 6077.834870 C = 8285.659338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.080 3.920 3 Si 0.865 3.135 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.083 0.917 9 C 0.206 3.794 10 N -0.581 5.581 11 C 0.168 3.832 12 C 0.119 3.881 13 C -0.159 4.159 14 C -0.081 4.081 15 C -0.181 4.181 16 C 0.093 3.907 17 N -0.457 5.457 18 C 0.525 3.475 19 O -0.540 6.540 20 C -0.119 4.119 21 C -0.101 4.101 22 H 0.157 0.843 23 S 0.049 5.951 24 C 0.372 3.628 25 N -0.669 5.669 26 N -0.692 5.692 27 C 0.537 3.463 28 O -0.487 6.487 29 H 0.267 0.733 30 H 0.035 0.965 31 H 0.029 0.971 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.137 0.863 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.151 0.849 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.343 0.657 41 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.884 -3.922 -2.039 12.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.125 4.125 3 Si 0.692 3.308 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.101 0.899 9 C 0.085 3.915 10 N -0.311 5.311 11 C 0.044 3.956 12 C -0.021 4.021 13 C -0.179 4.179 14 C -0.107 4.107 15 C -0.201 4.201 16 C -0.064 4.064 17 N -0.166 5.166 18 C 0.312 3.688 19 O -0.419 6.419 20 C -0.161 4.161 21 C -0.234 4.234 22 H 0.174 0.826 23 S 0.274 5.726 24 C -0.017 4.017 25 N -0.303 5.303 26 N -0.347 5.347 27 C 0.319 3.681 28 O -0.358 6.358 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.047 0.953 32 H 0.117 0.883 33 H 0.115 0.885 34 H 0.155 0.845 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.168 0.832 38 H 0.131 0.869 39 H 0.142 0.858 40 H 0.163 0.837 41 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 11.296 -6.275 -1.610 13.021 hybrid contribution 0.909 3.831 -1.321 4.153 sum 12.204 -2.444 -2.931 12.787 Atomic orbital electron populations 1.69884 1.06176 1.27259 1.48955 1.24856 0.94682 0.98755 0.94182 0.87018 0.80492 0.84242 0.79077 1.19805 1.20783 1.18842 1.21365 0.88769 0.95215 1.52943 0.89878 1.19891 0.96092 0.77741 0.97760 1.47718 1.63725 1.15826 1.03870 1.20177 0.88801 0.99844 0.86729 1.21902 0.96581 0.91120 0.92464 1.22128 0.97644 0.98898 0.99256 1.21553 0.92896 0.98215 0.98039 1.22108 1.00332 0.97625 1.00030 1.22780 0.93416 0.95891 0.94328 1.67653 1.00363 1.26631 1.21957 1.19952 0.77240 0.86421 0.85203 1.90675 1.46552 1.17469 1.87159 1.21659 1.06902 0.97835 0.89677 1.24074 1.05899 0.97623 0.95818 0.82586 1.87895 1.43008 1.33092 1.08611 1.25236 0.91676 0.84660 1.00177 1.70072 1.13792 1.31135 1.15274 1.44551 1.38989 1.28579 1.22559 1.19697 0.78632 0.83921 0.85814 1.90838 1.47596 1.22939 1.74413 0.92273 0.94711 0.95286 0.88299 0.88529 0.84526 0.85135 0.85288 0.83185 0.86950 0.85847 0.83687 0.75227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.68 13.96 55.43 0.77 -23.91 16 2 C 0.08 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.87 18.94 27.47 -169.99 -4.67 14.27 16 4 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.26 -5.40 6.54 56.52 0.37 -5.03 16 7 C -0.54 -13.31 9.83 -34.44 -0.34 -13.64 16 8 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 9 C 0.21 4.19 4.03 -5.20 -0.02 4.17 16 10 N -0.58 -10.89 2.44 -176.44 -0.43 -11.32 16 11 C 0.17 2.86 5.71 -5.19 -0.03 2.83 16 12 C 0.12 1.88 6.36 -82.59 -0.53 1.35 16 13 C -0.16 -2.17 9.72 -39.44 -0.38 -2.55 16 14 C -0.08 -0.93 10.18 -39.28 -0.40 -1.33 16 15 C -0.18 -1.99 10.11 -39.44 -0.40 -2.38 16 16 C 0.09 1.21 11.18 -17.55 -0.20 1.01 16 17 N -0.46 -7.42 10.27 -9.48 -0.10 -7.52 16 18 C 0.52 9.64 7.43 -10.98 -0.08 9.56 16 19 O -0.54 -10.51 14.57 5.56 0.08 -10.43 16 20 C -0.12 -1.95 3.82 -27.88 -0.11 -2.06 16 21 C -0.10 -1.45 2.87 -27.69 -0.08 -1.53 16 22 H 0.16 2.06 8.03 -51.93 -0.42 1.64 16 23 S 0.05 0.72 21.49 -107.50 -2.31 -1.59 16 24 C 0.37 4.94 8.92 -88.68 -0.79 4.15 16 25 N -0.67 -8.77 14.13 30.84 0.44 -8.33 16 26 N -0.69 -8.25 5.22 -12.31 -0.06 -8.32 16 27 C 0.54 7.47 7.52 -11.92 -0.09 7.38 16 28 O -0.49 -7.90 18.01 5.57 0.10 -7.80 16 29 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 31 H 0.03 0.58 5.87 -51.93 -0.30 0.27 16 32 H 0.10 1.58 7.97 -51.93 -0.41 1.16 16 33 H 0.10 1.71 7.42 -51.93 -0.39 1.33 16 34 H 0.14 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 36 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 37 H 0.15 1.55 8.06 -52.49 -0.42 1.12 16 38 H 0.11 1.74 7.40 -51.93 -0.38 1.36 16 39 H 0.12 2.19 8.00 -51.93 -0.42 1.77 16 40 H 0.34 3.55 8.92 -40.82 -0.36 3.19 16 41 H 0.41 3.86 8.91 -40.82 -0.36 3.50 16 LS Contribution 369.74 15.07 5.57 5.57 Total: -1.00 -31.25 369.74 -8.85 -40.09 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -4.70 Total: 10.37 kcal Atomic # 6 Polarization: 12.45 SS G_CDS: -3.54 Total: 8.91 kcal Atomic # 7 Polarization: -60.01 SS G_CDS: 0.62 Total: -59.39 kcal Atomic # 8 Polarization: -18.42 SS G_CDS: 0.18 Total: -18.23 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.67 Total: 14.27 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -2.31 Total: -1.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -31.25 -8.85 -40.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742638417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.402 kcal (2) G-P(sol) polarization free energy of solvation -31.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds