Wall clock time and date at job start Wed Apr 1 2020 05:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86801 * 120.00029 * 2 1 4 4 H 1.48501 * 109.46855 * 270.00013 * 3 2 1 5 5 H 1.48493 * 109.47066 * 30.00314 * 3 2 1 6 6 H 1.48502 * 109.46674 * 150.00482 * 3 2 1 7 7 C 1.37878 * 119.99801 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99718 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00253 * 179.97438 * 7 2 1 10 10 N 1.46498 * 109.47309 * 179.97438 * 9 7 2 11 11 C 1.46504 * 120.00007 * 269.99811 * 10 9 7 12 12 C 1.50697 * 109.47165 * 269.99970 * 11 10 9 13 13 C 1.38229 * 119.61813 * 94.73328 * 12 11 10 14 14 C 1.38627 * 119.16225 * 179.75772 * 13 12 11 15 15 C 1.38673 * 118.41732 * 0.49969 * 14 13 12 16 16 C 1.38175 * 119.16531 * 359.73613 * 15 14 13 17 17 N 1.31850 * 119.62039 * 275.00179 * 12 11 10 18 18 C 1.34778 * 119.99889 * 90.00183 * 10 9 7 19 19 O 1.21274 * 120.00119 * 179.97438 * 18 10 9 20 20 C 1.50701 * 119.99846 * 359.97438 * 18 10 9 21 21 C 1.52997 * 109.46972 * 180.02562 * 20 18 10 22 22 H 1.09000 * 110.54067 * 303.59466 * 21 20 18 23 23 S 1.82372 * 110.61139 * 66.44991 * 21 20 18 24 24 C 1.77245 * 94.48881 * 118.51549 * 23 21 20 25 25 N 1.30278 * 126.28085 * 180.02562 * 24 23 21 26 26 N 1.37065 * 107.44592 * 359.97438 * 24 23 21 27 27 C 1.32207 * 120.27981 * 0.02562 * 26 24 23 28 28 O 1.21263 * 122.87710 * 179.97438 * 27 26 24 29 29 H 0.96997 * 119.99664 * 359.97438 * 1 2 3 30 30 H 1.09003 * 109.47045 * 59.99693 * 9 7 2 31 31 H 1.08999 * 109.46898 * 299.99673 * 9 7 2 32 32 H 1.09002 * 109.46928 * 30.00154 * 11 10 9 33 33 H 1.08998 * 109.46855 * 150.00273 * 11 10 9 34 34 H 1.08004 * 120.41698 * 359.97393 * 13 12 11 35 35 H 1.08003 * 120.79160 * 180.26419 * 14 13 12 36 36 H 1.08003 * 120.41531 * 179.71281 * 15 14 13 37 37 H 1.07997 * 119.61503 * 179.97438 * 16 15 14 38 38 H 1.09000 * 109.47454 * 59.99723 * 20 18 10 39 39 H 1.09000 * 109.47119 * 299.99741 * 20 18 10 40 40 H 0.96999 * 120.00392 * 179.97438 * 25 24 23 41 41 H 0.96998 * 119.85689 * 179.71976 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 7 3.9998 -2.5754 -0.0010 11 6 4.2444 -3.2658 1.2678 12 6 5.6679 -3.0289 1.7022 13 6 5.9522 -1.9987 2.5788 14 6 7.2642 -1.7925 2.9761 15 6 8.2471 -2.6274 2.4663 16 6 7.8879 -3.6335 1.5900 17 7 6.6284 -3.8035 1.2376 18 6 4.2239 -3.2110 -1.1682 19 8 4.6286 -4.3542 -1.1681 20 6 3.9718 -2.5010 -2.4733 21 6 4.3022 -3.4388 -3.6361 22 1 5.3298 -3.7944 -3.5605 23 16 3.1387 -4.8424 -3.6795 24 6 2.5010 -4.4445 -5.2847 25 7 1.5809 -5.1004 -5.9331 26 7 3.1527 -3.3194 -5.7184 27 6 4.0711 -2.7466 -4.9592 28 8 4.6763 -1.7512 -5.2960 29 1 -0.4849 0.8400 0.0004 30 1 3.8752 -0.6805 0.8888 31 1 3.8745 -0.6802 -0.8912 32 1 3.5639 -2.8814 2.0276 33 1 4.0774 -4.3350 1.1377 34 1 5.1616 -1.3646 2.9522 35 1 7.5154 -0.9980 3.6632 36 1 9.2803 -2.4928 2.7505 37 1 8.6475 -4.2877 1.1882 38 1 4.6016 -1.6133 -2.5317 39 1 2.9236 -2.2072 -2.5305 40 1 1.2987 -4.8001 -6.8111 41 1 2.9423 -2.9444 -6.5879 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742638417.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:40 Heat of formation + Delta-G solvation = -15.999648 kcal Electronic energy + Delta-G solvation = -28087.327612 eV Core-core repulsion = 24093.447806 eV Total energy + Delta-G solvation = -3993.879806 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.09357 -41.30567 -40.38047 -38.26896 -36.92473 -34.91681 -34.55514 -33.66055 -33.28241 -32.60585 -29.95612 -28.49318 -26.45881 -25.04302 -24.60314 -24.10960 -23.12639 -22.10065 -20.15173 -19.38967 -19.27848 -19.08292 -17.96863 -17.76199 -17.39520 -17.22561 -16.97846 -16.72734 -16.59784 -16.16371 -15.96960 -15.61256 -14.99957 -14.67018 -14.57490 -14.17464 -14.12072 -14.01761 -13.90862 -13.82514 -13.50743 -13.15526 -13.01510 -12.69522 -12.53928 -12.40849 -12.25267 -12.04189 -11.84119 -11.66760 -11.06539 -10.82668 -10.81448 -10.77138 -10.67292 -10.30487 -9.91281 -9.44219 -9.18060 -8.26492 -6.33628 -0.14955 0.14434 0.19158 0.45462 0.56707 1.35671 1.40870 1.43092 1.50852 1.62736 1.73292 2.21474 2.35771 2.66878 3.03332 3.07577 3.36233 3.43733 3.64648 3.89420 3.94186 4.06287 4.08384 4.24434 4.30997 4.31418 4.54195 4.60664 4.66894 4.73753 4.84878 4.88368 4.92014 4.95180 5.28277 5.32544 5.33292 5.45782 5.63673 5.86147 6.20228 6.21390 6.57769 6.74753 6.75063 7.19016 7.23010 7.35155 8.89205 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.008035 B = 0.004606 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3483.782927 B = 6077.834870 C = 8285.659338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.024 3.976 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.234 1.234 7 C -0.536 4.536 8 H 0.038 0.962 9 C 0.216 3.784 10 N -0.586 5.586 11 C 0.169 3.831 12 C 0.096 3.904 13 C -0.168 4.168 14 C -0.078 4.078 15 C -0.166 4.166 16 C 0.079 3.921 17 N -0.495 5.495 18 C 0.520 3.480 19 O -0.553 6.553 20 C -0.115 4.115 21 C -0.090 4.090 22 H 0.169 0.831 23 S 0.010 5.990 24 C 0.379 3.621 25 N -0.672 5.672 26 N -0.677 5.677 27 C 0.545 3.455 28 O -0.507 6.507 29 H 0.267 0.733 30 H 0.049 0.951 31 H 0.043 0.957 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.143 0.857 35 H 0.165 0.835 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.125 0.875 39 H 0.106 0.894 40 H 0.359 0.641 41 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.753 -2.429 -1.962 15.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.175 4.175 3 Si 0.752 3.248 4 H -0.193 1.193 5 H -0.213 1.213 6 H -0.157 1.157 7 C -0.574 4.574 8 H 0.056 0.944 9 C 0.094 3.906 10 N -0.316 5.316 11 C 0.045 3.955 12 C -0.042 4.042 13 C -0.188 4.188 14 C -0.104 4.104 15 C -0.186 4.186 16 C -0.078 4.078 17 N -0.205 5.205 18 C 0.308 3.692 19 O -0.432 6.432 20 C -0.156 4.156 21 C -0.223 4.223 22 H 0.186 0.814 23 S 0.236 5.764 24 C -0.012 4.012 25 N -0.308 5.308 26 N -0.333 5.333 27 C 0.328 3.672 28 O -0.380 6.380 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.118 0.882 33 H 0.096 0.904 34 H 0.161 0.839 35 H 0.182 0.818 36 H 0.185 0.815 37 H 0.188 0.812 38 H 0.143 0.857 39 H 0.125 0.875 40 H 0.182 0.818 41 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 14.168 -4.811 -1.553 15.043 hybrid contribution -0.002 3.207 -1.332 3.472 sum 14.165 -1.604 -2.885 14.545 Atomic orbital electron populations 1.70047 1.08291 1.28183 1.51341 1.25684 0.95292 1.02651 0.93887 0.85992 0.80221 0.79142 0.79447 1.19342 1.21273 1.15677 1.21489 0.90983 0.93377 1.51595 0.94377 1.19690 0.93107 0.78976 0.98782 1.47751 1.63686 1.15422 1.04748 1.20148 0.90672 0.98530 0.86103 1.21590 0.95537 0.92773 0.94317 1.22246 0.99201 0.98376 0.98971 1.21973 0.91801 0.98765 0.97822 1.22511 1.02118 0.95876 0.98074 1.23241 0.92658 0.97029 0.94891 1.67541 1.01810 1.27733 1.23416 1.20279 0.76867 0.86363 0.85721 1.90662 1.47147 1.18015 1.87426 1.21579 1.06001 0.98569 0.89478 1.23999 1.06210 0.96719 0.95385 0.81394 1.88037 1.43996 1.33889 1.10513 1.24852 0.91904 0.84996 0.99429 1.70013 1.13290 1.31233 1.16245 1.44312 1.38082 1.27939 1.22942 1.19513 0.78583 0.83468 0.85617 1.90835 1.48521 1.23799 1.74806 0.92399 0.93293 0.93925 0.88196 0.90379 0.83943 0.81785 0.81497 0.81184 0.85748 0.87534 0.81826 0.73489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -53.95 13.96 21.45 0.30 -53.65 16 2 C 0.02 1.25 5.47 84.65 0.46 1.71 16 3 Si 0.93 38.21 27.47 68.60 1.88 40.10 16 4 H -0.27 -10.84 7.11 99.48 0.71 -10.13 16 5 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.23 -8.43 6.54 99.48 0.65 -7.78 16 7 C -0.54 -26.79 9.83 25.60 0.25 -26.54 16 8 H 0.04 2.21 8.06 -2.91 -0.02 2.18 16 9 C 0.22 8.65 4.03 85.63 0.35 8.99 16 10 N -0.59 -22.24 2.44 -830.51 -2.03 -24.27 16 11 C 0.17 5.93 5.71 85.63 0.49 6.41 16 12 C 0.10 3.00 6.36 42.55 0.27 3.27 16 13 C -0.17 -4.26 9.72 22.36 0.22 -4.04 16 14 C -0.08 -1.50 10.18 22.47 0.23 -1.27 16 15 C -0.17 -3.01 10.11 22.36 0.23 -2.79 16 16 C 0.08 1.88 11.18 84.67 0.95 2.83 16 17 N -0.50 -15.82 10.27 -183.90 -1.89 -17.71 16 18 C 0.52 19.41 7.43 87.66 0.65 20.06 16 19 O -0.55 -22.05 14.57 -3.01 -0.04 -22.10 16 20 C -0.11 -3.75 3.82 29.85 0.11 -3.64 16 21 C -0.09 -2.55 2.87 29.97 0.09 -2.46 16 22 H 0.17 4.33 8.03 -2.39 -0.02 4.31 16 23 S 0.01 0.31 21.49 -56.49 -1.21 -0.91 16 24 C 0.38 9.77 8.92 179.67 1.60 11.37 16 25 N -0.67 -16.88 14.13 -56.35 -0.80 -17.67 16 26 N -0.68 -15.32 5.22 -312.67 -1.63 -16.95 16 27 C 0.55 14.63 7.52 88.18 0.66 15.29 16 28 O -0.51 -15.76 18.01 -2.98 -0.05 -15.81 16 29 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 30 H 0.05 1.85 7.13 -2.39 -0.02 1.83 16 31 H 0.04 1.62 5.87 -2.39 -0.01 1.60 16 32 H 0.10 3.33 7.97 -2.39 -0.02 3.31 16 33 H 0.08 2.95 7.42 -2.39 -0.02 2.94 16 34 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.16 2.04 8.06 -2.91 -0.02 2.01 16 36 H 0.17 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 38 H 0.12 3.73 7.40 -2.39 -0.02 3.71 16 39 H 0.11 3.86 8.00 -2.39 -0.02 3.84 16 40 H 0.36 6.86 8.92 -92.71 -0.83 6.04 16 41 H 0.42 7.26 8.91 -92.71 -0.83 6.43 16 Total: -1.00 -69.43 369.74 0.48 -68.94 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -0.60 Total: 30.82 kcal Atomic # 6 Polarization: 22.65 SS G_CDS: 6.56 Total: 29.21 kcal Atomic # 7 Polarization: -124.21 SS G_CDS: -6.05 Total: -130.25 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -0.10 Total: -37.91 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 1.88 Total: 40.10 kcal Atomic # 16 Polarization: 0.31 SS G_CDS: -1.21 Total: -0.91 kcal Total: -69.43 0.48 -68.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742638417.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.942 kcal (2) G-P(sol) polarization free energy of solvation -69.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds