Wall clock time and date at job start Wed Apr 1 2020 05:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48498 * 109.47079 * 239.99765 * 3 2 1 5 5 H 1.48501 * 109.47138 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47543 * 119.99556 * 3 2 1 7 7 C 1.38637 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99671 * 180.02562 * 7 2 1 9 9 O 1.34804 * 120.00586 * 0.02562 * 7 2 1 10 10 C 1.35774 * 117.00360 * 174.47331 * 9 7 2 11 11 C 1.38740 * 120.08871 * 354.12283 * 10 9 7 12 12 C 1.38340 * 119.97578 * 179.97438 * 11 10 9 13 13 F 1.35105 * 119.91887 * 180.02562 * 12 11 10 14 14 C 1.38544 * 120.15413 * 359.97438 * 12 11 10 15 15 C 1.38198 * 120.17556 * 0.29730 * 14 12 11 16 16 C 1.38700 * 120.01613 * 359.45342 * 15 14 12 17 17 N 1.40140 * 120.07359 * 180.25560 * 16 15 14 18 18 C 1.34781 * 120.00052 * 33.98575 * 17 16 15 19 19 O 1.21597 * 119.99834 * 5.66666 * 18 17 16 20 20 N 1.34770 * 119.99890 * 185.66579 * 18 17 16 21 21 C 1.46502 * 120.00000 * 180.02562 * 20 18 17 22 22 H 1.08998 * 109.47130 * 324.99803 * 21 20 18 23 23 C 1.53005 * 109.47084 * 84.99798 * 21 20 18 24 24 O 1.42893 * 109.47249 * 65.00145 * 23 21 20 25 25 C 1.53002 * 109.47170 * 204.99582 * 21 20 18 26 26 C 1.53001 * 109.46760 * 64.99849 * 25 21 20 27 27 F 1.39904 * 109.47097 * 65.00457 * 26 25 21 28 28 F 1.39901 * 109.46836 * 184.99861 * 26 25 21 29 29 H 0.96996 * 120.00131 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00588 * 359.97438 * 11 10 9 31 31 H 1.07996 * 119.91119 * 180.02562 * 14 12 11 32 32 H 1.08000 * 119.99048 * 179.72035 * 15 14 12 33 33 H 0.96994 * 119.99666 * 213.99450 * 17 16 15 34 34 H 0.96996 * 120.00231 * 359.97438 * 20 18 17 35 35 H 1.09000 * 109.46921 * 185.00319 * 23 21 20 36 36 H 1.09004 * 109.46807 * 304.99742 * 23 21 20 37 37 H 0.96702 * 114.00045 * 180.02562 * 24 23 21 38 38 H 1.09004 * 109.46916 * 184.99595 * 25 21 20 39 39 H 1.09000 * 109.47040 * 305.00169 * 25 21 20 40 40 H 1.08989 * 109.47241 * 305.00086 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.1035 1.6962 -1.2125 5 1 1.2848 2.7464 -0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0695 -3.5041 -0.1154 11 6 3.4350 -3.4285 -0.3492 12 6 4.1813 -4.5874 -0.4664 13 9 5.5110 -4.5124 -0.6935 14 6 3.5686 -5.8245 -0.3504 15 6 2.2079 -5.9072 -0.1232 16 6 1.4536 -4.7499 0.0007 17 7 0.0746 -4.8323 0.2365 18 6 -0.4219 -5.8354 0.9874 19 8 0.3330 -6.6086 1.5450 20 7 -1.7551 -5.9814 1.1203 21 6 -2.2948 -7.0714 1.9370 22 1 -1.6550 -7.9486 1.8408 23 6 -2.3442 -6.6344 3.4025 24 8 -3.2727 -5.5579 3.5475 25 6 -3.7071 -7.4153 1.4595 26 6 -3.6428 -7.9703 0.0351 27 9 -2.9474 -9.1842 0.0385 28 9 -4.9409 -8.1779 -0.4435 29 1 -0.4850 0.8400 -0.0004 30 1 3.9149 -2.4653 -0.4396 31 1 4.1551 -6.7267 -0.4422 32 1 1.7326 -6.8732 -0.0378 33 1 -0.5225 -4.1675 -0.1408 34 1 -2.3573 -5.3644 0.6759 35 1 -2.6615 -7.4737 4.0213 36 1 -1.3539 -6.3049 3.7169 37 1 -3.3553 -5.2290 4.4531 38 1 -4.1423 -8.1638 2.1217 39 1 -4.3237 -6.5166 1.4717 40 1 -3.1275 -7.2582 -0.6093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760113898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:35 Heat of formation + Delta-G solvation = -228.294185 kcal Electronic energy + Delta-G solvation = -30741.143128 eV Core-core repulsion = 25721.155178 eV Total energy + Delta-G solvation = -5019.987950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.113 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.13688 -48.25763 -47.14076 -40.41320 -39.02623 -37.60420 -36.36284 -35.10721 -34.08962 -32.43029 -31.77471 -29.42890 -28.63199 -27.74070 -25.52022 -23.80217 -22.84319 -21.93230 -21.09660 -20.53132 -18.60857 -18.35881 -17.81183 -17.65935 -17.57968 -17.27263 -16.89857 -16.34242 -15.70253 -15.42268 -15.24175 -15.00251 -14.94941 -14.36929 -14.27522 -14.14450 -14.04482 -13.68967 -13.62412 -13.54106 -13.45404 -13.30517 -13.10588 -12.66510 -12.37417 -12.14222 -12.00769 -11.66340 -11.61590 -11.40199 -11.10555 -10.98361 -10.75315 -10.57903 -10.23733 -9.96578 -9.82170 -9.52834 -9.13988 -8.97265 -7.90089 -7.11389 -6.62079 -4.19670 1.82530 2.10638 2.73709 3.06540 3.06877 3.09472 3.34019 3.52344 3.83475 3.99280 4.06096 4.18231 4.30629 4.33440 4.41029 4.85140 4.88459 4.93778 5.00929 5.09762 5.10256 5.17082 5.37836 5.54719 5.55076 5.68824 5.73609 6.00396 6.17939 6.39923 6.52786 6.65743 6.89349 6.90312 7.04353 7.09356 7.25264 7.42124 7.63446 7.81871 8.17841 8.76359 8.84105 9.44981 10.54907 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.003190 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.964295 B = 8776.527064 C =10478.494196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.044 3.956 3 Si 0.942 3.058 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.392 4.392 8 H 0.093 0.907 9 O -0.168 6.168 10 C 0.157 3.843 11 C -0.257 4.257 12 C 0.128 3.872 13 F -0.151 7.151 14 C -0.227 4.227 15 C -0.049 4.049 16 C 0.080 3.920 17 N -0.663 5.663 18 C 0.705 3.295 19 O -0.583 6.583 20 N -0.741 5.741 21 C 0.171 3.829 22 H 0.111 0.889 23 C 0.063 3.937 24 O -0.569 6.569 25 C -0.173 4.173 26 C 0.260 3.740 27 F -0.204 7.204 28 F -0.207 7.207 29 H 0.272 0.728 30 H 0.143 0.857 31 H 0.123 0.877 32 H 0.136 0.864 33 H 0.412 0.588 34 H 0.400 0.600 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.381 0.619 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.605 -11.445 2.993 14.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.493 5.493 2 C -0.161 4.161 3 Si 0.766 3.234 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.111 0.889 9 O -0.071 6.071 10 C 0.101 3.899 11 C -0.278 4.278 12 C 0.108 3.892 13 F -0.130 7.130 14 C -0.247 4.247 15 C -0.070 4.070 16 C -0.015 4.015 17 N -0.310 5.310 18 C 0.406 3.594 19 O -0.461 6.461 20 N -0.398 5.398 21 C 0.065 3.935 22 H 0.129 0.871 23 C -0.016 4.016 24 O -0.375 6.375 25 C -0.212 4.212 26 C 0.206 3.794 27 F -0.185 7.185 28 F -0.189 7.189 29 H 0.082 0.918 30 H 0.160 0.840 31 H 0.141 0.859 32 H 0.154 0.846 33 H 0.248 0.752 34 H 0.235 0.765 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.228 0.772 38 H 0.121 0.879 39 H 0.129 0.871 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.443 -12.061 2.859 14.458 hybrid contribution 0.233 1.538 0.231 1.572 sum -7.210 -10.523 3.090 13.125 Atomic orbital electron populations 1.69995 1.05928 1.28112 1.45293 1.25273 0.95901 0.98831 0.96134 0.85757 0.78765 0.79465 0.79409 1.19339 1.20185 1.19375 1.21290 0.91940 0.80436 1.53137 0.88924 1.83931 1.33851 1.11293 1.78001 1.18800 0.89525 0.86977 0.94606 1.20853 0.94106 0.98376 1.14508 1.17446 0.76680 0.94256 1.00778 1.91413 1.32007 1.97356 1.92253 1.20445 0.95171 0.95643 1.13481 1.20483 0.92623 0.97009 0.96910 1.16597 0.82501 0.91022 1.11401 1.42204 1.06690 1.29103 1.52990 1.15855 0.82112 0.82020 0.79392 1.90909 1.57157 1.46332 1.51743 1.45107 1.05483 1.34042 1.55124 1.20797 0.93162 0.90572 0.88948 0.87104 1.22630 0.93409 0.89624 0.95954 1.86430 1.64025 1.52925 1.34093 1.22880 0.99009 1.04560 0.94711 1.21956 0.76314 0.83544 0.97605 1.92997 1.79188 1.48742 1.97610 1.92987 1.40178 1.95812 1.89882 0.91775 0.83970 0.85941 0.84597 0.75232 0.76519 0.92749 0.92108 0.77212 0.87930 0.87083 0.87185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.18 13.67 55.48 0.76 -22.42 16 2 C 0.04 1.12 5.49 -17.52 -0.10 1.03 16 3 Si 0.94 19.51 29.55 -169.99 -5.02 14.49 16 4 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 5 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.39 -10.24 9.44 30.88 0.29 -9.95 16 8 H 0.09 2.28 5.30 -52.48 -0.28 2.00 16 9 O -0.17 -4.32 9.30 0.05 0.00 -4.32 16 10 C 0.16 3.56 6.66 -38.94 -0.26 3.30 16 11 C -0.26 -5.55 9.11 -39.36 -0.36 -5.91 16 12 C 0.13 2.53 7.29 -39.43 -0.29 2.25 16 13 F -0.15 -2.87 17.26 2.25 0.04 -2.83 16 14 C -0.23 -4.15 10.02 -39.48 -0.40 -4.55 16 15 C -0.05 -0.93 8.65 -39.43 -0.34 -1.27 16 16 C 0.08 1.61 6.29 -83.43 -0.52 1.09 16 17 N -0.66 -11.71 5.21 -14.07 -0.07 -11.78 16 18 C 0.71 11.45 8.26 -86.92 -0.72 10.74 16 19 O -0.58 -11.01 13.76 5.28 0.07 -10.94 16 20 N -0.74 -8.82 4.40 -58.67 -0.26 -9.08 16 21 C 0.17 1.73 2.33 -67.93 -0.16 1.57 16 22 H 0.11 1.24 7.25 -51.93 -0.38 0.87 16 23 C 0.06 0.61 6.85 37.16 0.25 0.87 16 24 O -0.57 -5.45 12.83 -35.23 -0.45 -5.91 16 25 C -0.17 -1.38 4.69 -26.73 -0.13 -1.50 16 26 C 0.26 2.36 5.24 37.16 0.19 2.55 16 27 F -0.20 -2.28 16.93 2.25 0.04 -2.24 16 28 F -0.21 -2.16 17.34 2.25 0.04 -2.12 16 29 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 30 H 0.14 3.07 5.72 -52.49 -0.30 2.77 16 31 H 0.12 1.93 8.06 -52.49 -0.42 1.51 16 32 H 0.14 2.44 6.47 -52.49 -0.34 2.10 16 33 H 0.41 6.94 8.56 -40.82 -0.35 6.59 16 34 H 0.40 4.08 8.62 -40.82 -0.35 3.73 16 35 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.38 2.30 9.12 45.56 0.42 2.71 16 38 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.11 0.86 7.73 -51.93 -0.40 0.45 16 40 H 0.11 0.88 7.62 -51.94 -0.40 0.48 16 LS Contribution 359.08 15.07 5.41 5.41 Total: -1.00 -31.38 359.08 -5.17 -36.56 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -3.20 Total: 14.98 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -2.52 Total: 0.21 kcal Atomic # 7 Polarization: -43.71 SS G_CDS: 0.43 Total: -43.29 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.38 Total: -21.16 kcal Atomic # 9 Polarization: -7.32 SS G_CDS: 0.12 Total: -7.20 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.49 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.38 -5.17 -36.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760113898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -191.739 kcal (2) G-P(sol) polarization free energy of solvation -31.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -228.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds