Wall clock time and date at job start Wed Apr 1 2020 05:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31571 * 1 3 3 Si 1.86793 * 120.00249 * 2 1 4 4 H 1.48498 * 109.47079 * 239.99765 * 3 2 1 5 5 H 1.48501 * 109.47138 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47543 * 119.99556 * 3 2 1 7 7 C 1.38637 * 119.99665 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99671 * 180.02562 * 7 2 1 9 9 O 1.34804 * 120.00586 * 0.02562 * 7 2 1 10 10 C 1.35774 * 117.00360 * 174.47331 * 9 7 2 11 11 C 1.38740 * 120.08871 * 354.12283 * 10 9 7 12 12 C 1.38340 * 119.97578 * 179.97438 * 11 10 9 13 13 F 1.35105 * 119.91887 * 180.02562 * 12 11 10 14 14 C 1.38544 * 120.15413 * 359.97438 * 12 11 10 15 15 C 1.38198 * 120.17556 * 0.29730 * 14 12 11 16 16 C 1.38700 * 120.01613 * 359.45342 * 15 14 12 17 17 N 1.40140 * 120.07359 * 180.25560 * 16 15 14 18 18 C 1.34781 * 120.00052 * 33.98575 * 17 16 15 19 19 O 1.21597 * 119.99834 * 5.66666 * 18 17 16 20 20 N 1.34770 * 119.99890 * 185.66579 * 18 17 16 21 21 C 1.46502 * 120.00000 * 180.02562 * 20 18 17 22 22 H 1.08998 * 109.47130 * 324.99803 * 21 20 18 23 23 C 1.53005 * 109.47084 * 84.99798 * 21 20 18 24 24 O 1.42893 * 109.47249 * 65.00145 * 23 21 20 25 25 C 1.53002 * 109.47170 * 204.99582 * 21 20 18 26 26 C 1.53001 * 109.46760 * 64.99849 * 25 21 20 27 27 F 1.39904 * 109.47097 * 65.00457 * 26 25 21 28 28 F 1.39901 * 109.46836 * 184.99861 * 26 25 21 29 29 H 0.96996 * 120.00131 * 0.02562 * 1 2 3 30 30 H 1.07998 * 120.00588 * 359.97438 * 11 10 9 31 31 H 1.07996 * 119.91119 * 180.02562 * 14 12 11 32 32 H 1.08000 * 119.99048 * 179.72035 * 15 14 12 33 33 H 0.96994 * 119.99666 * 213.99450 * 17 16 15 34 34 H 0.96996 * 120.00231 * 359.97438 * 20 18 17 35 35 H 1.09000 * 109.46921 * 185.00319 * 23 21 20 36 36 H 1.09004 * 109.46807 * 304.99742 * 23 21 20 37 37 H 0.96702 * 114.00045 * 180.02562 * 24 23 21 38 38 H 1.09004 * 109.46916 * 184.99595 * 25 21 20 39 39 H 1.09000 * 109.47040 * 305.00169 * 25 21 20 40 40 H 1.08989 * 109.47241 * 305.00086 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2497 1.6176 0.0000 4 1 3.1035 1.6962 -1.2125 5 1 1.2848 2.7464 -0.0006 6 1 3.1035 1.6964 1.2125 7 6 2.0088 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0010 9 8 1.3349 -2.3681 0.0005 10 6 2.0695 -3.5041 -0.1154 11 6 3.4350 -3.4285 -0.3492 12 6 4.1813 -4.5874 -0.4664 13 9 5.5110 -4.5124 -0.6935 14 6 3.5686 -5.8245 -0.3504 15 6 2.2079 -5.9072 -0.1232 16 6 1.4536 -4.7499 0.0007 17 7 0.0746 -4.8323 0.2365 18 6 -0.4219 -5.8354 0.9874 19 8 0.3330 -6.6086 1.5450 20 7 -1.7551 -5.9814 1.1203 21 6 -2.2948 -7.0714 1.9370 22 1 -1.6550 -7.9486 1.8408 23 6 -2.3442 -6.6344 3.4025 24 8 -3.2727 -5.5579 3.5475 25 6 -3.7071 -7.4153 1.4595 26 6 -3.6428 -7.9703 0.0351 27 9 -2.9474 -9.1842 0.0385 28 9 -4.9409 -8.1779 -0.4435 29 1 -0.4850 0.8400 -0.0004 30 1 3.9149 -2.4653 -0.4396 31 1 4.1551 -6.7267 -0.4422 32 1 1.7326 -6.8732 -0.0378 33 1 -0.5225 -4.1675 -0.1408 34 1 -2.3573 -5.3644 0.6759 35 1 -2.6615 -7.4737 4.0213 36 1 -1.3539 -6.3049 3.7169 37 1 -3.3553 -5.2290 4.4531 38 1 -4.1423 -8.1638 2.1217 39 1 -4.3237 -6.5166 1.4717 40 1 -3.1275 -7.2582 -0.6093 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760113898.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:34 Heat of formation + Delta-G solvation = -251.180687 kcal Electronic energy + Delta-G solvation = -30742.135561 eV Core-core repulsion = 25721.155178 eV Total energy + Delta-G solvation = -5020.980383 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.113 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.92687 -49.81415 -47.94311 -41.79247 -40.53906 -38.69556 -37.87315 -36.03910 -35.54434 -34.30274 -32.77297 -31.05753 -29.86779 -28.85651 -27.37433 -24.68146 -24.19503 -23.45502 -22.30513 -21.66881 -20.13959 -19.86162 -19.33321 -18.57565 -18.37381 -18.25512 -18.04822 -17.34801 -17.16531 -16.95866 -16.56193 -16.48398 -16.18905 -15.96245 -15.52639 -15.43552 -15.23571 -15.03562 -14.90576 -14.87121 -14.50155 -14.27399 -13.99541 -13.96060 -13.78707 -13.43722 -13.38193 -13.03069 -12.79411 -12.57855 -12.38030 -12.33610 -12.16588 -11.85825 -11.67975 -11.37713 -11.10530 -10.91106 -10.80976 -10.20419 -9.54439 -8.72220 -8.50476 -6.16049 0.21945 0.47781 1.37545 1.45684 1.50821 1.54538 2.02216 2.14761 2.69022 2.77615 3.06628 3.12110 3.19681 3.28662 3.33313 3.46748 3.46964 3.66228 3.95182 4.12746 4.18045 4.21051 4.36252 4.36829 4.48081 4.60520 4.67788 4.73210 4.93401 4.95823 5.02342 5.23719 5.29587 5.33835 5.41915 5.57550 5.89422 5.94111 6.08337 6.84833 6.91681 6.94317 7.44513 7.63948 8.69831 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.009969 B = 0.003190 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2807.964295 B = 8776.527064 C =10478.494196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.007 4.007 3 Si 1.009 2.991 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.263 1.263 7 C -0.416 4.416 8 H 0.097 0.903 9 O -0.202 6.202 10 C 0.130 3.870 11 C -0.264 4.264 12 C 0.121 3.879 13 F -0.145 7.145 14 C -0.202 4.202 15 C -0.050 4.050 16 C 0.083 3.917 17 N -0.666 5.666 18 C 0.706 3.294 19 O -0.609 6.609 20 N -0.724 5.724 21 C 0.167 3.833 22 H 0.102 0.898 23 C 0.068 3.932 24 O -0.580 6.580 25 C -0.159 4.159 26 C 0.256 3.744 27 F -0.216 7.216 28 F -0.214 7.214 29 H 0.275 0.725 30 H 0.135 0.865 31 H 0.158 0.842 32 H 0.150 0.850 33 H 0.414 0.586 34 H 0.410 0.590 35 H 0.084 0.916 36 H 0.032 0.968 37 H 0.396 0.604 38 H 0.120 0.880 39 H 0.119 0.881 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.590 -12.561 3.301 15.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.207 4.207 3 Si 0.829 3.171 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.187 1.187 7 C -0.492 4.492 8 H 0.115 0.885 9 O -0.107 6.107 10 C 0.076 3.924 11 C -0.285 4.285 12 C 0.101 3.899 13 F -0.124 7.124 14 C -0.222 4.222 15 C -0.070 4.070 16 C -0.013 4.013 17 N -0.313 5.313 18 C 0.406 3.594 19 O -0.489 6.489 20 N -0.381 5.381 21 C 0.062 3.938 22 H 0.120 0.880 23 C -0.012 4.012 24 O -0.388 6.388 25 C -0.197 4.197 26 C 0.203 3.797 27 F -0.198 7.198 28 F -0.195 7.195 29 H 0.084 0.916 30 H 0.153 0.847 31 H 0.175 0.825 32 H 0.168 0.832 33 H 0.250 0.750 34 H 0.246 0.754 35 H 0.102 0.898 36 H 0.050 0.950 37 H 0.246 0.754 38 H 0.138 0.862 39 H 0.137 0.863 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -7.452 -13.217 3.178 15.503 hybrid contribution 0.254 1.614 0.154 1.641 sum -7.198 -11.603 3.331 14.055 Atomic orbital electron populations 1.70104 1.07474 1.29011 1.47451 1.26339 0.96814 1.02017 0.95526 0.84768 0.77594 0.74985 0.79734 1.18423 1.19437 1.18722 1.21673 0.92444 0.81215 1.53861 0.88538 1.83904 1.34591 1.11813 1.80394 1.19160 0.90145 0.87187 0.95895 1.20930 0.94057 0.98985 1.14480 1.17450 0.76951 0.94190 1.01342 1.91428 1.31415 1.97337 1.92215 1.20850 0.95086 0.96262 1.09974 1.20700 0.92878 0.96951 0.96495 1.16855 0.83842 0.90649 1.09941 1.42238 1.05897 1.29702 1.53486 1.15947 0.83270 0.81248 0.78890 1.90881 1.58220 1.47119 1.52691 1.45063 1.03993 1.34392 1.54624 1.20969 0.94121 0.89489 0.89204 0.87965 1.22536 0.92215 0.90601 0.95802 1.86386 1.63630 1.53041 1.35770 1.22781 0.97459 1.05249 0.94197 1.22163 0.75901 0.83122 0.98538 1.92973 1.79474 1.49638 1.97702 1.92974 1.40694 1.95837 1.90038 0.91626 0.84734 0.82468 0.83242 0.75019 0.75351 0.89841 0.94955 0.75409 0.86192 0.86311 0.86235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.28 13.67 21.61 0.30 -49.98 16 2 C -0.01 -0.37 5.49 84.83 0.47 0.09 16 3 Si 1.01 40.41 29.55 68.60 2.03 42.44 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.21 16 5 H -0.27 -10.35 7.11 99.48 0.71 -9.65 16 6 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 7 C -0.42 -22.46 9.44 67.92 0.64 -21.82 16 8 H 0.10 4.91 5.30 -2.91 -0.02 4.89 16 9 O -0.20 -10.80 9.30 -22.74 -0.21 -11.01 16 10 C 0.13 6.02 6.66 22.68 0.15 6.17 16 11 C -0.26 -11.47 9.11 22.41 0.20 -11.27 16 12 C 0.12 4.60 7.29 22.37 0.16 4.77 16 13 F -0.15 -5.25 17.26 44.97 0.78 -4.48 16 14 C -0.20 -6.87 10.02 22.33 0.22 -6.64 16 15 C -0.05 -1.78 8.65 22.37 0.19 -1.59 16 16 C 0.08 3.35 6.29 38.22 0.24 3.59 16 17 N -0.67 -23.63 5.21 -316.68 -1.65 -25.28 16 18 C 0.71 22.55 8.26 179.06 1.48 24.03 16 19 O -0.61 -22.52 13.76 -4.02 -0.06 -22.58 16 20 N -0.72 -16.55 4.40 -457.79 -2.01 -18.57 16 21 C 0.17 3.12 2.33 44.99 0.10 3.23 16 22 H 0.10 2.15 7.25 -2.39 -0.02 2.14 16 23 C 0.07 1.21 6.85 71.98 0.49 1.70 16 24 O -0.58 -10.07 12.83 -148.98 -1.91 -11.98 16 25 C -0.16 -2.17 4.69 30.60 0.14 -2.02 16 26 C 0.26 4.22 5.24 71.98 0.38 4.60 16 27 F -0.22 -4.54 16.93 44.97 0.76 -3.78 16 28 F -0.21 -4.12 17.34 44.97 0.78 -3.34 16 29 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 30 H 0.14 5.96 5.72 -2.91 -0.02 5.95 16 31 H 0.16 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.15 5.05 6.47 -2.91 -0.02 5.03 16 33 H 0.41 14.27 8.56 -92.71 -0.79 13.47 16 34 H 0.41 7.91 8.62 -92.71 -0.80 7.11 16 35 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 37 H 0.40 4.10 9.12 -74.06 -0.68 3.42 16 38 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.12 1.52 7.73 -2.39 -0.02 1.50 16 40 H 0.12 1.73 7.62 -2.39 -0.02 1.71 16 Total: -1.00 -68.69 359.08 2.57 -66.11 By element: Atomic # 1 Polarization: 38.71 SS G_CDS: -1.11 Total: 37.60 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 4.88 Total: 4.83 kcal Atomic # 7 Polarization: -90.46 SS G_CDS: -3.37 Total: -93.82 kcal Atomic # 8 Polarization: -43.38 SS G_CDS: -2.18 Total: -45.56 kcal Atomic # 9 Polarization: -13.92 SS G_CDS: 2.32 Total: -11.60 kcal Atomic # 14 Polarization: 40.41 SS G_CDS: 2.03 Total: 42.44 kcal Total: -68.69 2.57 -66.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760113898.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -185.068 kcal (2) G-P(sol) polarization free energy of solvation -68.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -253.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -251.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds