Wall clock time and date at job start Wed Apr 1 2020 05:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93224 * 179.67457 * 11 10 9 13 13 C 1.38324 * 120.06703 * 0.61662 * 12 11 10 14 14 C 1.38274 * 120.13763 * 359.68070 * 13 12 11 15 15 C 1.50705 * 119.96913 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46946 * 269.97869 * 15 14 13 17 17 O 1.20823 * 120.00200 * 359.97438 * 16 15 14 18 18 O 1.34231 * 119.99420 * 179.97438 * 16 15 14 19 19 C 1.45199 * 116.99629 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47124 * 179.97438 * 19 18 16 21 21 N 1.46498 * 109.47283 * 65.00165 * 20 19 18 22 22 C 1.34771 * 124.17569 * 269.72770 * 21 20 19 23 23 O 1.21229 * 127.15983 * 359.97438 * 22 21 20 24 24 C 1.51584 * 105.68318 * 179.97438 * 22 21 20 25 25 N 1.47314 * 103.59289 * 0.32458 * 24 22 21 26 26 C 1.33787 * 124.17940 * 90.02146 * 21 20 19 27 27 O 1.21538 * 123.76942 * 359.96761 * 26 21 20 28 28 C 1.38123 * 120.07175 * 359.97438 * 14 13 12 29 29 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 30 30 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.96872 * 180.31612 * 12 11 10 32 32 H 1.08001 * 119.93406 * 179.69892 * 13 12 11 33 33 H 1.09006 * 109.46654 * 29.97662 * 15 14 13 34 34 H 1.08999 * 109.47320 * 149.97401 * 15 14 13 35 35 H 1.09002 * 109.47370 * 299.99927 * 19 18 16 36 36 H 1.08999 * 109.47057 * 60.00225 * 19 18 16 37 37 H 1.09006 * 109.47268 * 185.00349 * 20 19 18 38 38 H 1.09002 * 109.47202 * 304.99806 * 20 19 18 39 39 H 1.08995 * 110.76526 * 241.71326 * 24 22 21 40 40 H 1.09001 * 110.56130 * 118.83138 * 24 22 21 41 41 H 0.96998 * 126.68777 * 179.76946 * 25 24 22 42 42 H 1.07998 * 120.03894 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8529 -4.7988 -0.1996 13 6 5.2294 -4.8618 -0.3206 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 6 8.1003 -3.8591 0.9033 17 8 7.3980 -3.8605 1.8865 18 8 9.4344 -3.9342 1.0312 19 6 9.9636 -4.0141 2.3809 20 6 11.4906 -4.0929 2.3261 21 7 12.0245 -2.8455 1.7737 22 6 12.2463 -2.6324 0.4616 23 8 12.0496 -3.4073 -0.4497 24 6 12.7930 -1.2220 0.3622 25 7 12.8256 -0.7639 1.7619 26 6 12.3575 -1.7793 2.5100 27 8 12.2507 -1.7337 3.7198 28 6 5.3549 -2.4724 -0.2272 29 1 -0.4849 0.8401 -0.0004 30 1 2.1493 -3.5267 0.0145 31 1 3.2702 -5.7081 -0.1897 32 1 5.7197 -5.8204 -0.4050 33 1 7.7494 -4.6563 -1.0449 34 1 7.8421 -2.8801 -0.9753 35 1 9.6651 -3.1281 2.9414 36 1 9.5717 -4.9043 2.8728 37 1 11.8831 -4.2422 3.3320 38 1 11.7888 -4.9280 1.6922 39 1 12.1312 -0.5921 -0.2322 40 1 13.7969 -1.2296 -0.0623 41 1 13.1258 0.1012 2.0817 42 1 5.9409 -1.5652 -0.2382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000760624886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:08 Heat of formation + Delta-G solvation = -119.265113 kcal Electronic energy + Delta-G solvation = -29611.702475 eV Core-core repulsion = 25138.299120 eV Total energy + Delta-G solvation = -4473.403355 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.71849 -40.50893 -39.14407 -38.92444 -37.19697 -36.49166 -36.40502 -35.20860 -32.51568 -32.26314 -30.68529 -29.48950 -28.14195 -27.43836 -25.22106 -24.40254 -23.29729 -22.08161 -21.56659 -20.76383 -20.27008 -18.50129 -17.80467 -17.77095 -17.61671 -17.18145 -17.02886 -16.70605 -16.18194 -15.71868 -15.64762 -15.23742 -14.86422 -14.59711 -14.48183 -14.22672 -14.16972 -13.77945 -13.73757 -13.46243 -13.22613 -13.12784 -12.61020 -12.49608 -12.20178 -12.17217 -11.76778 -11.41303 -11.34141 -10.89587 -10.83641 -10.80223 -10.74596 -10.65312 -10.45015 -10.23041 -10.16538 -9.96789 -9.40340 -8.87454 -8.21340 -7.38908 -6.41060 -4.07884 1.25726 1.71776 1.86794 2.24318 2.28777 2.52663 2.68836 2.74958 3.22182 3.25100 3.40649 3.55553 4.24099 4.26747 4.33445 4.46673 4.51540 4.58664 4.66892 4.72875 4.81749 4.95148 5.06226 5.08896 5.11602 5.26672 5.32956 5.40566 5.53541 5.65374 5.80796 6.08633 6.21720 6.26498 6.31799 6.50096 6.57857 6.75405 6.98236 7.05209 7.16793 7.28782 7.57483 7.65743 7.79924 7.80815 8.03858 8.94260 9.56478 10.66726 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.002436 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.966616 B =11490.788726 C =12755.463193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.260 1.260 7 C -0.389 4.389 8 H 0.107 0.893 9 O -0.218 6.218 10 C 0.160 3.840 11 C -0.214 4.214 12 C -0.076 4.076 13 C -0.186 4.186 14 C -0.046 4.046 15 C -0.063 4.063 16 C 0.460 3.540 17 O -0.488 6.488 18 O -0.356 6.356 19 C 0.046 3.954 20 C 0.125 3.875 21 N -0.577 5.577 22 C 0.522 3.478 23 O -0.452 6.452 24 C 0.061 3.939 25 N -0.729 5.729 26 C 0.700 3.300 27 O -0.543 6.543 28 C -0.173 4.173 29 H 0.279 0.721 30 H 0.134 0.866 31 H 0.112 0.888 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.110 0.890 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.119 0.881 38 H 0.108 0.892 39 H 0.125 0.875 40 H 0.124 0.876 41 H 0.442 0.558 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.535 -5.617 -0.343 29.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.140 4.140 3 Si 0.730 3.270 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.184 1.184 7 C -0.465 4.465 8 H 0.124 0.876 9 O -0.123 6.123 10 C 0.108 3.892 11 C -0.233 4.233 12 C -0.094 4.094 13 C -0.204 4.204 14 C -0.047 4.047 15 C -0.100 4.100 16 C 0.302 3.698 17 O -0.373 6.373 18 O -0.274 6.274 19 C -0.029 4.029 20 C 0.003 3.997 21 N -0.325 5.325 22 C 0.308 3.692 23 O -0.319 6.319 24 C -0.067 4.067 25 N -0.394 5.394 26 C 0.401 3.599 27 O -0.416 6.416 28 C -0.192 4.192 29 H 0.089 0.911 30 H 0.152 0.848 31 H 0.130 0.870 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.128 0.872 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.137 0.863 38 H 0.127 0.873 39 H 0.143 0.857 40 H 0.141 0.859 41 H 0.286 0.714 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 28.000 -5.760 0.174 28.587 hybrid contribution 0.135 1.089 0.331 1.147 sum 28.136 -4.671 0.505 28.525 Atomic orbital electron populations 1.69646 1.05550 1.28461 1.48153 1.24456 0.95019 0.98791 0.95705 0.86189 0.80367 0.81487 0.78916 1.19859 1.20760 1.18414 1.20768 0.76853 0.96651 1.52207 0.87610 1.83567 1.22637 1.25589 1.80534 1.18990 0.91452 0.85607 0.93135 1.21335 1.01251 0.91938 1.08745 1.20752 0.94073 0.96822 0.97731 1.20445 0.93995 0.96408 1.09593 1.18668 0.91630 0.93295 1.01065 1.20244 0.92645 1.06024 0.91083 1.23863 0.80016 0.72911 0.93058 1.90735 1.62378 1.43818 1.40367 1.86564 1.24540 1.84467 1.31853 1.23417 0.92855 1.04219 0.82431 1.21803 0.91535 0.84187 1.02125 1.46336 1.60402 1.16125 1.09631 1.20836 0.76744 0.89403 0.82168 1.90849 1.48284 1.51495 1.41317 1.22512 1.05170 0.93670 0.85332 1.45424 1.69493 1.17571 1.06901 1.15898 0.78032 0.80618 0.85357 1.91042 1.58633 1.81502 1.10466 1.19948 0.92117 0.96916 1.10241 0.91061 0.84850 0.86977 0.87488 0.86977 0.87226 0.90342 0.89081 0.86296 0.87339 0.85701 0.85866 0.71366 0.86743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.66 13.96 55.48 0.77 -24.88 16 2 C 0.06 1.80 5.49 -17.52 -0.10 1.70 16 3 Si 0.90 21.91 28.62 -169.99 -4.86 17.04 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.26 -6.36 7.11 56.52 0.40 -5.96 16 7 C -0.39 -11.12 9.95 30.89 0.31 -10.81 16 8 H 0.11 3.08 5.44 -52.49 -0.29 2.79 16 9 O -0.22 -5.87 8.59 0.05 0.00 -5.87 16 10 C 0.16 3.79 6.65 -39.11 -0.26 3.53 16 11 C -0.21 -4.72 9.17 -39.40 -0.36 -5.08 16 12 C -0.08 -1.40 10.04 -39.61 -0.40 -1.80 16 13 C -0.19 -3.18 9.70 -39.54 -0.38 -3.57 16 14 C -0.05 -0.80 4.37 -104.65 -0.46 -1.26 16 15 C -0.06 -0.82 5.94 -29.03 -0.17 -0.99 16 16 C 0.46 6.65 7.95 36.00 0.29 6.94 16 17 O -0.49 -8.89 15.78 -18.75 -0.30 -9.19 16 18 O -0.36 -4.33 9.90 -39.26 -0.39 -4.71 16 19 C 0.05 0.46 5.81 37.16 0.22 0.67 16 20 C 0.12 0.92 6.11 -4.04 -0.02 0.90 16 21 N -0.58 -4.73 2.57 -120.73 -0.31 -5.04 16 22 C 0.52 3.99 8.03 -10.55 -0.08 3.91 16 23 O -0.45 -4.74 17.75 5.60 0.10 -4.64 16 24 C 0.06 0.22 7.97 -4.31 -0.03 0.18 16 25 N -0.73 -3.61 6.58 -65.74 -0.43 -4.04 16 26 C 0.70 6.20 8.62 -88.03 -0.76 5.45 16 27 O -0.54 -6.77 17.48 5.33 0.09 -6.68 16 28 C -0.17 -3.53 9.65 -39.39 -0.38 -3.91 16 29 H 0.28 7.51 8.31 -40.82 -0.34 7.17 16 30 H 0.13 3.07 5.64 -52.48 -0.30 2.77 16 31 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 32 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 33 H 0.11 1.16 8.09 -51.93 -0.42 0.74 16 34 H 0.11 1.23 8.08 -51.93 -0.42 0.81 16 35 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 36 H 0.09 0.82 8.13 -51.93 -0.42 0.40 16 37 H 0.12 0.70 7.86 -51.93 -0.41 0.29 16 38 H 0.11 0.68 8.00 -51.93 -0.42 0.26 16 39 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.12 0.10 8.14 -51.93 -0.42 -0.32 16 41 H 0.44 1.22 8.96 -40.82 -0.37 0.85 16 42 H 0.11 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 375.10 15.07 5.65 5.65 Total: -1.00 -37.37 375.10 -6.98 -44.35 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -4.70 Total: 2.15 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -2.60 Total: -4.14 kcal Atomic # 7 Polarization: -34.00 SS G_CDS: 0.03 Total: -33.97 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.49 Total: -31.09 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.86 Total: 17.04 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -37.37 -6.98 -44.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760624886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.916 kcal (2) G-P(sol) polarization free energy of solvation -37.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds