Wall clock time and date at job start Wed Apr 1 2020 05:09:08
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31555 * 1
3 3 Si 1.86797 * 120.00375 * 2 1
4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1
5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1
6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1
7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3
8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1
9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1
10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2
11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7
12 12 C 1.38080 * 119.93224 * 179.67457 * 11 10 9
13 13 C 1.38324 * 120.06703 * 0.61662 * 12 11 10
14 14 C 1.38274 * 120.13763 * 359.68070 * 13 12 11
15 15 C 1.50705 * 119.96913 * 180.02562 * 14 13 12
16 16 C 1.50698 * 109.46946 * 269.97869 * 15 14 13
17 17 O 1.20823 * 120.00200 * 359.97438 * 16 15 14
18 18 O 1.34231 * 119.99420 * 179.97438 * 16 15 14
19 19 C 1.45199 * 116.99629 * 179.97438 * 18 16 15
20 20 C 1.53000 * 109.47124 * 179.97438 * 19 18 16
21 21 N 1.46498 * 109.47283 * 65.00165 * 20 19 18
22 22 C 1.34771 * 124.17569 * 269.72770 * 21 20 19
23 23 O 1.21229 * 127.15983 * 359.97438 * 22 21 20
24 24 C 1.51584 * 105.68318 * 179.97438 * 22 21 20
25 25 N 1.47314 * 103.59289 * 0.32458 * 24 22 21
26 26 C 1.33787 * 124.17940 * 90.02146 * 21 20 19
27 27 O 1.21538 * 123.76942 * 359.96761 * 26 21 20
28 28 C 1.38123 * 120.07175 * 359.97438 * 14 13 12
29 29 H 0.96999 * 119.99329 * 0.02562 * 1 2 3
30 30 H 1.08010 * 120.03286 * 359.97438 * 11 10 9
31 31 H 1.08001 * 119.96872 * 180.31612 * 12 11 10
32 32 H 1.08001 * 119.93406 * 179.69892 * 13 12 11
33 33 H 1.09006 * 109.46654 * 29.97662 * 15 14 13
34 34 H 1.08999 * 109.47320 * 149.97401 * 15 14 13
35 35 H 1.09002 * 109.47370 * 299.99927 * 19 18 16
36 36 H 1.08999 * 109.47057 * 60.00225 * 19 18 16
37 37 H 1.09006 * 109.47268 * 185.00349 * 20 19 18
38 38 H 1.09002 * 109.47202 * 304.99806 * 20 19 18
39 39 H 1.08995 * 110.76526 * 241.71326 * 24 22 21
40 40 H 1.09001 * 110.56130 * 118.83138 * 24 22 21
41 41 H 0.96998 * 126.68777 * 179.76946 * 25 24 22
42 42 H 1.07998 * 120.03894 * 180.02562 * 28 14 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3155 0.0000 0.0000
3 14 2.2496 1.6177 0.0000
4 1 2.4972 2.0463 -1.4001
5 1 1.4471 2.6526 0.6999
6 1 3.5472 1.4401 0.7000
7 6 2.0088 -1.2009 0.0005
8 1 1.4687 -2.1362 0.0014
9 8 3.3570 -1.2009 0.0011
10 6 3.9734 -2.4059 -0.1046
11 6 3.2238 -3.5750 -0.0851
12 6 3.8529 -4.7988 -0.1996
13 6 5.2294 -4.8618 -0.3206
14 6 5.9790 -3.6999 -0.3341
15 6 7.4784 -3.7729 -0.4667
16 6 8.1003 -3.8591 0.9033
17 8 7.3980 -3.8605 1.8865
18 8 9.4344 -3.9342 1.0312
19 6 9.9636 -4.0141 2.3809
20 6 11.4906 -4.0929 2.3261
21 7 12.0245 -2.8455 1.7737
22 6 12.2463 -2.6324 0.4616
23 8 12.0496 -3.4073 -0.4497
24 6 12.7930 -1.2220 0.3622
25 7 12.8256 -0.7639 1.7619
26 6 12.3575 -1.7793 2.5100
27 8 12.2507 -1.7337 3.7198
28 6 5.3549 -2.4724 -0.2272
29 1 -0.4849 0.8401 -0.0004
30 1 2.1493 -3.5267 0.0145
31 1 3.2702 -5.7081 -0.1897
32 1 5.7197 -5.8204 -0.4050
33 1 7.7494 -4.6563 -1.0449
34 1 7.8421 -2.8801 -0.9753
35 1 9.6651 -3.1281 2.9414
36 1 9.5717 -4.9043 2.8728
37 1 11.8831 -4.2422 3.3320
38 1 11.7888 -4.9280 1.6922
39 1 12.1312 -0.5921 -0.2322
40 1 13.7969 -1.2296 -0.0623
41 1 13.1258 0.1012 2.0817
42 1 5.9409 -1.5652 -0.2382
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000760624886.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:09:08
Heat of formation + Delta-G solvation = -146.285829 kcal
Electronic energy + Delta-G solvation = -29612.874181 eV
Core-core repulsion = 25138.299120 eV
Total energy + Delta-G solvation = -4474.575061 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 348.125 amu
Computer time = 0.81 seconds
Orbital eigenvalues (eV)
-43.29565 -41.66104 -40.80785 -39.59045 -38.65152 -37.67488 -37.15838 -35.86778
-34.50697 -33.72089 -31.47689 -31.09266 -28.88767 -28.48111 -27.22422 -25.19653
-23.91804 -23.48221 -22.97884 -21.72647 -21.36220 -19.69007 -19.09298 -18.92591
-18.82771 -18.25000 -17.77802 -17.60391 -17.10864 -16.86698 -16.70398 -16.34183
-16.21127 -15.84692 -15.66817 -15.25105 -15.21701 -15.04976 -14.79616 -14.57674
-14.40422 -14.20437 -14.07909 -13.97000 -13.69626 -13.11706 -13.01066 -12.88678
-12.57918 -12.48722 -12.40717 -12.17185 -11.96290 -11.74492 -11.62611 -11.34833
-11.27189 -10.96659 -10.92691 -10.40971 -9.76261 -9.11847 -8.51961 -6.24952
0.36140 0.64999 0.68897 1.15764 1.19247 1.28682 1.32944 1.49617
1.63737 1.95601 2.26281 2.30593 2.74924 2.99436 3.09003 3.10780
3.58471 3.68883 3.74525 3.89658 4.02404 4.02665 4.22539 4.23273
4.33825 4.35263 4.41553 4.46981 4.51314 4.58121 4.65865 4.65983
4.76402 4.90143 5.16907 5.31889 5.36293 5.58542 5.66852 5.73058
5.83551 5.88220 6.02415 6.20032 6.44843 6.71354 6.82219 7.09067
7.56105 8.59847
Molecular weight = 348.12amu
Principal moments of inertia in cm(-1)
A = 0.012673 B = 0.002436 C = 0.002195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2208.966616 B =11490.788726 C =12755.463193
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.923 5.923
2 C 0.010 3.990
3 Si 0.970 3.030
4 H -0.261 1.261
5 H -0.266 1.266
6 H -0.267 1.267
7 C -0.401 4.401
8 H 0.081 0.919
9 O -0.246 6.246
10 C 0.119 3.881
11 C -0.235 4.235
12 C -0.076 4.076
13 C -0.166 4.166
14 C -0.040 4.040
15 C -0.060 4.060
16 C 0.466 3.534
17 O -0.534 6.534
18 O -0.348 6.348
19 C 0.044 3.956
20 C 0.126 3.874
21 N -0.582 5.582
22 C 0.516 3.484
23 O -0.483 6.483
24 C 0.069 3.931
25 N -0.712 5.712
26 C 0.694 3.306
27 O -0.588 6.588
28 C -0.179 4.179
29 H 0.285 0.715
30 H 0.109 0.891
31 H 0.144 0.856
32 H 0.152 0.848
33 H 0.153 0.847
34 H 0.133 0.867
35 H 0.056 0.944
36 H 0.101 0.899
37 H 0.132 0.868
38 H 0.123 0.877
39 H 0.148 0.852
40 H 0.161 0.839
41 H 0.453 0.547
42 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 32.376 -6.225 -1.694 33.013
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.564 5.564
2 C -0.188 4.188
3 Si 0.793 3.207
4 H -0.185 1.185
5 H -0.191 1.191
6 H -0.192 1.192
7 C -0.477 4.477
8 H 0.098 0.902
9 O -0.154 6.154
10 C 0.070 3.930
11 C -0.255 4.255
12 C -0.094 4.094
13 C -0.185 4.185
14 C -0.040 4.040
15 C -0.096 4.096
16 C 0.310 3.690
17 O -0.423 6.423
18 O -0.265 6.265
19 C -0.031 4.031
20 C 0.005 3.995
21 N -0.329 5.329
22 C 0.305 3.695
23 O -0.353 6.353
24 C -0.057 4.057
25 N -0.377 5.377
26 C 0.394 3.606
27 O -0.465 6.465
28 C -0.198 4.198
29 H 0.095 0.905
30 H 0.127 0.873
31 H 0.161 0.839
32 H 0.169 0.831
33 H 0.170 0.830
34 H 0.151 0.849
35 H 0.075 0.925
36 H 0.119 0.881
37 H 0.150 0.850
38 H 0.142 0.858
39 H 0.166 0.834
40 H 0.178 0.822
41 H 0.300 0.700
42 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges 31.903 -6.376 -1.220 32.556
hybrid contribution -0.822 0.981 0.731 1.474
sum 31.081 -5.395 -0.488 31.549
Atomic orbital electron populations
1.69729 1.06871 1.29621 1.50173 1.25279 0.95896 1.02140 0.95503
0.85224 0.78615 0.77429 0.79476 1.18545 1.19098 1.19190 1.20719
0.78054 0.96185 1.52723 0.90150 1.83507 1.21306 1.27327 1.83249
1.19559 0.93000 0.85234 0.95165 1.21378 1.00369 0.93408 1.10306
1.21134 0.95372 0.96395 0.96511 1.21045 0.93319 0.98313 1.05789
1.19140 0.94343 0.92038 0.98464 1.20357 0.89184 1.09166 0.90937
1.24056 0.80462 0.71605 0.92905 1.90739 1.63432 1.46188 1.41900
1.86560 1.23214 1.83755 1.33004 1.23590 0.94546 1.03688 0.81255
1.21880 0.89560 0.84670 1.03402 1.46462 1.60151 1.16160 1.10148
1.21475 0.76028 0.90685 0.81353 1.90832 1.49796 1.52817 1.41865
1.22751 1.07448 0.91065 0.84465 1.45436 1.67889 1.17141 1.07264
1.16102 0.78103 0.81383 0.85007 1.91012 1.60700 1.82366 1.12411
1.20268 0.90766 0.98917 1.09814 0.90524 0.87285 0.83861 0.83058
0.82977 0.84870 0.92502 0.88112 0.84995 0.85847 0.83412 0.82199
0.70040 0.85890
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.92 -56.10 13.96 21.61 0.30 -55.80 16
2 C 0.01 0.60 5.49 84.83 0.47 1.06 16
3 Si 0.97 46.35 28.62 68.60 1.96 48.31 16
4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16
5 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16
6 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16
7 C -0.40 -24.28 9.95 67.92 0.68 -23.60 16
8 H 0.08 5.09 5.44 -2.91 -0.02 5.08 16
9 O -0.25 -13.87 8.59 -22.74 -0.20 -14.07 16
10 C 0.12 5.83 6.65 22.58 0.15 5.98 16
11 C -0.24 -10.77 9.17 22.39 0.21 -10.56 16
12 C -0.08 -2.71 10.04 22.25 0.22 -2.49 16
13 C -0.17 -5.09 9.70 22.30 0.22 -4.88 16
14 C -0.04 -1.26 4.37 -19.88 -0.09 -1.34 16
15 C -0.06 -1.30 5.94 29.10 0.17 -1.13 16
16 C 0.47 12.20 7.95 71.24 0.57 12.77 16
17 O -0.53 -18.70 15.78 21.97 0.35 -18.36 16
18 O -0.35 -7.57 9.90 -51.43 -0.51 -8.08 16
19 C 0.04 0.82 5.81 71.98 0.42 1.24 16
20 C 0.13 1.66 6.11 86.38 0.53 2.19 16
21 N -0.58 -8.47 2.57 -773.12 -1.99 -10.46 16
22 C 0.52 6.50 8.03 87.94 0.71 7.20 16
23 O -0.48 -8.86 17.75 -2.87 -0.05 -8.91 16
24 C 0.07 0.23 7.97 85.76 0.68 0.91 16
25 N -0.71 -5.18 6.58 -480.31 -3.16 -8.34 16
26 C 0.69 11.29 8.62 179.44 1.55 12.83 16
27 O -0.59 -14.48 17.48 -3.84 -0.07 -14.54 16
28 C -0.18 -7.16 9.65 22.39 0.22 -6.95 16
29 H 0.29 15.84 8.31 -92.71 -0.77 15.07 16
30 H 0.11 5.44 5.64 -2.91 -0.02 5.43 16
31 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16
32 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16
33 H 0.15 2.21 8.09 -2.38 -0.02 2.19 16
34 H 0.13 2.39 8.08 -2.39 -0.02 2.37 16
35 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16
36 H 0.10 1.68 8.13 -2.39 -0.02 1.67 16
37 H 0.13 1.39 7.86 -2.38 -0.02 1.37 16
38 H 0.12 1.26 8.00 -2.39 -0.02 1.24 16
39 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16
40 H 0.16 -0.51 8.14 -2.39 -0.02 -0.53 16
41 H 0.45 1.32 8.96 -92.71 -0.83 0.49 16
42 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16
Total: -1.00 -87.34 375.10 3.59 -83.75
By element:
Atomic # 1 Polarization: 13.00 SS G_CDS: 0.26 Total: 13.26 kcal
Atomic # 6 Polarization: -13.44 SS G_CDS: 6.69 Total: -6.76 kcal
Atomic # 7 Polarization: -69.76 SS G_CDS: -4.85 Total: -74.60 kcal
Atomic # 8 Polarization: -63.49 SS G_CDS: -0.48 Total: -63.96 kcal
Atomic # 14 Polarization: 46.35 SS G_CDS: 1.96 Total: 48.31 kcal
Total: -87.34 3.59 -83.75 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000760624886.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -62.533 kcal
(2) G-P(sol) polarization free energy of solvation -87.342 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.875 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.753 kcal
(6) G-S(sol) free energy of system = (1) + (5) -146.286 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.81 seconds