Wall clock time and date at job start Wed Apr 1 2020 05:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31555 * 1 3 3 Si 1.86797 * 120.00375 * 2 1 4 4 H 1.48506 * 109.46953 * 269.99701 * 3 2 1 5 5 H 1.48494 * 109.47187 * 29.99435 * 3 2 1 6 6 H 1.48495 * 109.47353 * 150.00076 * 3 2 1 7 7 C 1.38658 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00271 * 359.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 180.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38898 * 120.06778 * 354.17533 * 10 9 7 12 12 C 1.38080 * 119.93224 * 179.67457 * 11 10 9 13 13 C 1.38324 * 120.06703 * 0.61662 * 12 11 10 14 14 C 1.38274 * 120.13763 * 359.68070 * 13 12 11 15 15 C 1.50705 * 119.96913 * 180.02562 * 14 13 12 16 16 C 1.50698 * 109.46946 * 269.97869 * 15 14 13 17 17 O 1.20823 * 120.00200 * 359.97438 * 16 15 14 18 18 O 1.34231 * 119.99420 * 179.97438 * 16 15 14 19 19 C 1.45199 * 116.99629 * 179.97438 * 18 16 15 20 20 C 1.53000 * 109.47124 * 179.97438 * 19 18 16 21 21 N 1.46498 * 109.47283 * 65.00165 * 20 19 18 22 22 C 1.34771 * 124.17569 * 269.72770 * 21 20 19 23 23 O 1.21229 * 127.15983 * 359.97438 * 22 21 20 24 24 C 1.51584 * 105.68318 * 179.97438 * 22 21 20 25 25 N 1.47314 * 103.59289 * 0.32458 * 24 22 21 26 26 C 1.33787 * 124.17940 * 90.02146 * 21 20 19 27 27 O 1.21538 * 123.76942 * 359.96761 * 26 21 20 28 28 C 1.38123 * 120.07175 * 359.97438 * 14 13 12 29 29 H 0.96999 * 119.99329 * 0.02562 * 1 2 3 30 30 H 1.08010 * 120.03286 * 359.97438 * 11 10 9 31 31 H 1.08001 * 119.96872 * 180.31612 * 12 11 10 32 32 H 1.08001 * 119.93406 * 179.69892 * 13 12 11 33 33 H 1.09006 * 109.46654 * 29.97662 * 15 14 13 34 34 H 1.08999 * 109.47320 * 149.97401 * 15 14 13 35 35 H 1.09002 * 109.47370 * 299.99927 * 19 18 16 36 36 H 1.08999 * 109.47057 * 60.00225 * 19 18 16 37 37 H 1.09006 * 109.47268 * 185.00349 * 20 19 18 38 38 H 1.09002 * 109.47202 * 304.99806 * 20 19 18 39 39 H 1.08995 * 110.76526 * 241.71326 * 24 22 21 40 40 H 1.09001 * 110.56130 * 118.83138 * 24 22 21 41 41 H 0.96998 * 126.68777 * 179.76946 * 25 24 22 42 42 H 1.07998 * 120.03894 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3155 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 2.4972 2.0463 -1.4001 5 1 1.4471 2.6526 0.6999 6 1 3.5472 1.4401 0.7000 7 6 2.0088 -1.2009 0.0005 8 1 1.4687 -2.1362 0.0014 9 8 3.3570 -1.2009 0.0011 10 6 3.9734 -2.4059 -0.1046 11 6 3.2238 -3.5750 -0.0851 12 6 3.8529 -4.7988 -0.1996 13 6 5.2294 -4.8618 -0.3206 14 6 5.9790 -3.6999 -0.3341 15 6 7.4784 -3.7729 -0.4667 16 6 8.1003 -3.8591 0.9033 17 8 7.3980 -3.8605 1.8865 18 8 9.4344 -3.9342 1.0312 19 6 9.9636 -4.0141 2.3809 20 6 11.4906 -4.0929 2.3261 21 7 12.0245 -2.8455 1.7737 22 6 12.2463 -2.6324 0.4616 23 8 12.0496 -3.4073 -0.4497 24 6 12.7930 -1.2220 0.3622 25 7 12.8256 -0.7639 1.7619 26 6 12.3575 -1.7793 2.5100 27 8 12.2507 -1.7337 3.7198 28 6 5.3549 -2.4724 -0.2272 29 1 -0.4849 0.8401 -0.0004 30 1 2.1493 -3.5267 0.0145 31 1 3.2702 -5.7081 -0.1897 32 1 5.7197 -5.8204 -0.4050 33 1 7.7494 -4.6563 -1.0449 34 1 7.8421 -2.8801 -0.9753 35 1 9.6651 -3.1281 2.9414 36 1 9.5717 -4.9043 2.8728 37 1 11.8831 -4.2422 3.3320 38 1 11.7888 -4.9280 1.6922 39 1 12.1312 -0.5921 -0.2322 40 1 13.7969 -1.2296 -0.0623 41 1 13.1258 0.1012 2.0817 42 1 5.9409 -1.5652 -0.2382 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760624886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:08 Heat of formation + Delta-G solvation = -146.285829 kcal Electronic energy + Delta-G solvation = -29612.874181 eV Core-core repulsion = 25138.299120 eV Total energy + Delta-G solvation = -4474.575061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.29565 -41.66104 -40.80785 -39.59045 -38.65152 -37.67488 -37.15838 -35.86778 -34.50697 -33.72089 -31.47689 -31.09266 -28.88767 -28.48111 -27.22422 -25.19653 -23.91804 -23.48221 -22.97884 -21.72647 -21.36220 -19.69007 -19.09298 -18.92591 -18.82771 -18.25000 -17.77802 -17.60391 -17.10864 -16.86698 -16.70398 -16.34183 -16.21127 -15.84692 -15.66817 -15.25105 -15.21701 -15.04976 -14.79616 -14.57674 -14.40422 -14.20437 -14.07909 -13.97000 -13.69626 -13.11706 -13.01066 -12.88678 -12.57918 -12.48722 -12.40717 -12.17185 -11.96290 -11.74492 -11.62611 -11.34833 -11.27189 -10.96659 -10.92691 -10.40971 -9.76261 -9.11847 -8.51961 -6.24952 0.36140 0.64999 0.68897 1.15764 1.19247 1.28682 1.32944 1.49617 1.63737 1.95601 2.26281 2.30593 2.74924 2.99436 3.09003 3.10780 3.58471 3.68883 3.74525 3.89658 4.02404 4.02665 4.22539 4.23273 4.33825 4.35263 4.41553 4.46981 4.51314 4.58121 4.65865 4.65983 4.76402 4.90143 5.16907 5.31889 5.36293 5.58542 5.66852 5.73058 5.83551 5.88220 6.02415 6.20032 6.44843 6.71354 6.82219 7.09067 7.56105 8.59847 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.012673 B = 0.002436 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.966616 B =11490.788726 C =12755.463193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.970 3.030 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.267 1.267 7 C -0.401 4.401 8 H 0.081 0.919 9 O -0.246 6.246 10 C 0.119 3.881 11 C -0.235 4.235 12 C -0.076 4.076 13 C -0.166 4.166 14 C -0.040 4.040 15 C -0.060 4.060 16 C 0.466 3.534 17 O -0.534 6.534 18 O -0.348 6.348 19 C 0.044 3.956 20 C 0.126 3.874 21 N -0.582 5.582 22 C 0.516 3.484 23 O -0.483 6.483 24 C 0.069 3.931 25 N -0.712 5.712 26 C 0.694 3.306 27 O -0.588 6.588 28 C -0.179 4.179 29 H 0.285 0.715 30 H 0.109 0.891 31 H 0.144 0.856 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.133 0.867 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.132 0.868 38 H 0.123 0.877 39 H 0.148 0.852 40 H 0.161 0.839 41 H 0.453 0.547 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.376 -6.225 -1.694 33.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.188 4.188 3 Si 0.793 3.207 4 H -0.185 1.185 5 H -0.191 1.191 6 H -0.192 1.192 7 C -0.477 4.477 8 H 0.098 0.902 9 O -0.154 6.154 10 C 0.070 3.930 11 C -0.255 4.255 12 C -0.094 4.094 13 C -0.185 4.185 14 C -0.040 4.040 15 C -0.096 4.096 16 C 0.310 3.690 17 O -0.423 6.423 18 O -0.265 6.265 19 C -0.031 4.031 20 C 0.005 3.995 21 N -0.329 5.329 22 C 0.305 3.695 23 O -0.353 6.353 24 C -0.057 4.057 25 N -0.377 5.377 26 C 0.394 3.606 27 O -0.465 6.465 28 C -0.198 4.198 29 H 0.095 0.905 30 H 0.127 0.873 31 H 0.161 0.839 32 H 0.169 0.831 33 H 0.170 0.830 34 H 0.151 0.849 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.150 0.850 38 H 0.142 0.858 39 H 0.166 0.834 40 H 0.178 0.822 41 H 0.300 0.700 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 31.903 -6.376 -1.220 32.556 hybrid contribution -0.822 0.981 0.731 1.474 sum 31.081 -5.395 -0.488 31.549 Atomic orbital electron populations 1.69729 1.06871 1.29621 1.50173 1.25279 0.95896 1.02140 0.95503 0.85224 0.78615 0.77429 0.79476 1.18545 1.19098 1.19190 1.20719 0.78054 0.96185 1.52723 0.90150 1.83507 1.21306 1.27327 1.83249 1.19559 0.93000 0.85234 0.95165 1.21378 1.00369 0.93408 1.10306 1.21134 0.95372 0.96395 0.96511 1.21045 0.93319 0.98313 1.05789 1.19140 0.94343 0.92038 0.98464 1.20357 0.89184 1.09166 0.90937 1.24056 0.80462 0.71605 0.92905 1.90739 1.63432 1.46188 1.41900 1.86560 1.23214 1.83755 1.33004 1.23590 0.94546 1.03688 0.81255 1.21880 0.89560 0.84670 1.03402 1.46462 1.60151 1.16160 1.10148 1.21475 0.76028 0.90685 0.81353 1.90832 1.49796 1.52817 1.41865 1.22751 1.07448 0.91065 0.84465 1.45436 1.67889 1.17141 1.07264 1.16102 0.78103 0.81383 0.85007 1.91012 1.60700 1.82366 1.12411 1.20268 0.90766 0.98917 1.09814 0.90524 0.87285 0.83861 0.83058 0.82977 0.84870 0.92502 0.88112 0.84995 0.85847 0.83412 0.82199 0.70040 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.10 13.96 21.61 0.30 -55.80 16 2 C 0.01 0.60 5.49 84.83 0.47 1.06 16 3 Si 0.97 46.35 28.62 68.60 1.96 48.31 16 4 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 5 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 7 C -0.40 -24.28 9.95 67.92 0.68 -23.60 16 8 H 0.08 5.09 5.44 -2.91 -0.02 5.08 16 9 O -0.25 -13.87 8.59 -22.74 -0.20 -14.07 16 10 C 0.12 5.83 6.65 22.58 0.15 5.98 16 11 C -0.24 -10.77 9.17 22.39 0.21 -10.56 16 12 C -0.08 -2.71 10.04 22.25 0.22 -2.49 16 13 C -0.17 -5.09 9.70 22.30 0.22 -4.88 16 14 C -0.04 -1.26 4.37 -19.88 -0.09 -1.34 16 15 C -0.06 -1.30 5.94 29.10 0.17 -1.13 16 16 C 0.47 12.20 7.95 71.24 0.57 12.77 16 17 O -0.53 -18.70 15.78 21.97 0.35 -18.36 16 18 O -0.35 -7.57 9.90 -51.43 -0.51 -8.08 16 19 C 0.04 0.82 5.81 71.98 0.42 1.24 16 20 C 0.13 1.66 6.11 86.38 0.53 2.19 16 21 N -0.58 -8.47 2.57 -773.12 -1.99 -10.46 16 22 C 0.52 6.50 8.03 87.94 0.71 7.20 16 23 O -0.48 -8.86 17.75 -2.87 -0.05 -8.91 16 24 C 0.07 0.23 7.97 85.76 0.68 0.91 16 25 N -0.71 -5.18 6.58 -480.31 -3.16 -8.34 16 26 C 0.69 11.29 8.62 179.44 1.55 12.83 16 27 O -0.59 -14.48 17.48 -3.84 -0.07 -14.54 16 28 C -0.18 -7.16 9.65 22.39 0.22 -6.95 16 29 H 0.29 15.84 8.31 -92.71 -0.77 15.07 16 30 H 0.11 5.44 5.64 -2.91 -0.02 5.43 16 31 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 32 H 0.15 3.38 8.06 -2.91 -0.02 3.36 16 33 H 0.15 2.21 8.09 -2.38 -0.02 2.19 16 34 H 0.13 2.39 8.08 -2.39 -0.02 2.37 16 35 H 0.06 1.33 8.13 -2.39 -0.02 1.31 16 36 H 0.10 1.68 8.13 -2.39 -0.02 1.67 16 37 H 0.13 1.39 7.86 -2.38 -0.02 1.37 16 38 H 0.12 1.26 8.00 -2.39 -0.02 1.24 16 39 H 0.15 -0.02 8.14 -2.39 -0.02 -0.04 16 40 H 0.16 -0.51 8.14 -2.39 -0.02 -0.53 16 41 H 0.45 1.32 8.96 -92.71 -0.83 0.49 16 42 H 0.12 4.60 8.06 -2.91 -0.02 4.58 16 Total: -1.00 -87.34 375.10 3.59 -83.75 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.26 Total: 13.26 kcal Atomic # 6 Polarization: -13.44 SS G_CDS: 6.69 Total: -6.76 kcal Atomic # 7 Polarization: -69.76 SS G_CDS: -4.85 Total: -74.60 kcal Atomic # 8 Polarization: -63.49 SS G_CDS: -0.48 Total: -63.96 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 1.96 Total: 48.31 kcal Total: -87.34 3.59 -83.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760624886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.533 kcal (2) G-P(sol) polarization free energy of solvation -87.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds