Wall clock time and date at job start Wed Apr 1 2020 05:09:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48494 * 109.47230 * 240.00354 * 3 2 1 5 5 H 1.48506 * 109.47073 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47099 * 119.99967 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.92607 * 179.67507 * 11 10 9 13 13 C 1.38314 * 120.07342 * 0.61997 * 12 11 10 14 14 C 1.38284 * 120.13758 * 359.67251 * 13 12 11 15 15 C 1.50702 * 119.96617 * 180.02562 * 14 13 12 16 16 C 1.50702 * 109.47204 * 269.97892 * 15 14 13 17 17 O 1.20826 * 119.99723 * 359.97438 * 16 15 14 18 18 O 1.34223 * 119.99743 * 179.97438 * 16 15 14 19 19 C 1.45199 * 116.99656 * 179.97438 * 18 16 15 20 20 C 1.50701 * 109.47216 * 179.97438 * 19 18 16 21 21 O 1.21233 * 119.99596 * 0.02562 * 20 19 18 22 22 N 1.34774 * 120.00329 * 180.02562 * 20 19 18 23 23 C 1.47052 * 125.41472 * 179.72211 * 22 20 19 24 24 C 1.54097 * 103.86330 * 179.86980 * 23 22 20 25 25 N 1.47054 * 103.86488 * 0.37391 * 24 23 22 26 26 C 1.33946 * 109.17611 * 359.75498 * 25 24 23 27 27 O 1.21538 * 123.03850 * 180.02562 * 26 25 24 28 28 C 1.38123 * 120.06539 * 0.02562 * 14 13 12 29 29 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 30 30 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 31 31 H 1.08004 * 119.95736 * 180.31623 * 12 11 10 32 32 H 1.08001 * 119.93634 * 179.69935 * 13 12 11 33 33 H 1.08997 * 109.47004 * 29.98389 * 15 14 13 34 34 H 1.08999 * 109.46889 * 149.97913 * 15 14 13 35 35 H 1.09002 * 109.47370 * 300.00168 * 19 18 16 36 36 H 1.09004 * 109.47479 * 60.00306 * 19 18 16 37 37 H 1.08997 * 110.54704 * 298.59775 * 23 22 20 38 38 H 1.08999 * 110.54639 * 61.40252 * 23 22 20 39 39 H 1.09006 * 110.76080 * 241.67563 * 24 23 22 40 40 H 1.09003 * 110.46109 * 118.92924 * 24 23 22 41 41 H 0.96994 * 125.40749 * 179.75597 * 25 24 23 42 42 H 1.08006 * 120.03219 * 180.02562 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1033 1.6963 -1.2125 5 1 1.2847 2.7465 -0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1996 13 6 3.5684 -5.8207 0.3201 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 6 1.2648 -7.8050 -0.9052 17 8 1.6176 -7.1972 -1.8881 18 8 0.6629 -8.9978 -1.0337 19 6 0.4679 -9.4957 -2.3837 20 6 -0.2170 -10.8370 -2.3303 21 8 -0.5119 -11.3249 -1.2604 22 7 -0.5015 -11.4943 -3.4720 23 6 -1.1590 -12.8068 -3.5585 24 6 -1.2390 -13.0806 -5.0728 25 7 -0.6098 -11.8975 -5.6786 26 6 -0.2251 -11.0583 -4.7081 27 8 0.3246 -9.9971 -4.9291 28 6 1.4365 -4.7345 0.2253 29 1 -0.4849 0.8401 -0.0004 30 1 3.9527 -2.4857 -0.0140 31 1 5.2811 -4.5471 0.1902 32 1 4.1533 -6.7247 0.4045 33 1 2.1300 -7.9004 1.0433 34 1 0.5456 -7.0924 0.9734 35 1 -0.1499 -8.7939 -2.9441 36 1 1.4350 -9.6013 -2.8753 37 1 -0.5590 -13.5688 -3.0611 38 1 -2.1586 -12.7631 -3.1262 39 1 -2.2766 -13.1694 -5.3951 40 1 -0.6821 -13.9825 -5.3270 41 1 -0.4922 -11.7486 -6.6298 42 1 0.3579 -4.7883 0.2359 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000760638336.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:11 Heat of formation + Delta-G solvation = -148.992370 kcal Electronic energy + Delta-G solvation = -29055.061955 eV Core-core repulsion = 24580.369529 eV Total energy + Delta-G solvation = -4474.692425 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.125 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.10096 -41.77038 -40.73056 -40.08838 -38.48230 -37.90951 -37.40016 -35.12562 -34.36286 -33.66179 -31.12913 -30.80651 -29.80006 -28.48762 -27.26452 -25.25513 -24.08429 -23.43056 -23.09335 -21.81205 -20.87552 -19.53480 -19.22541 -18.84689 -18.68807 -18.54341 -18.28233 -17.66938 -17.25595 -16.76401 -16.44101 -16.22533 -16.08572 -15.85536 -15.77033 -15.48026 -15.18777 -15.11348 -15.03587 -14.52611 -14.26621 -14.11265 -13.92910 -13.60376 -13.34377 -13.32536 -12.97322 -12.94282 -12.50940 -12.44287 -12.25303 -12.14284 -12.05023 -11.80228 -11.76976 -11.55758 -11.22292 -11.07750 -10.80139 -10.14735 -9.71750 -9.01250 -8.46969 -6.15742 0.34663 0.50598 0.71063 0.79301 1.09366 1.34081 1.45257 1.50891 1.69035 1.86930 2.17828 2.54492 2.83278 3.08564 3.16185 3.38211 3.38971 3.65444 3.82698 3.84085 3.89519 4.05246 4.07356 4.10271 4.28459 4.36741 4.51264 4.53113 4.59188 4.70204 4.71963 4.83817 4.98916 5.10968 5.14576 5.26035 5.28817 5.60995 5.64018 5.68873 5.71602 5.88719 6.01805 6.19695 6.39791 6.61259 6.97142 7.07994 7.78125 8.76259 Molecular weight = 348.12amu Principal moments of inertia in cm(-1) A = 0.018761 B = 0.001882 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1492.089554 B =14876.489744 C =15505.105503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.021 2.979 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.255 1.255 7 C -0.415 4.415 8 H 0.102 0.898 9 O -0.233 6.233 10 C 0.111 3.889 11 C -0.240 4.240 12 C -0.073 4.073 13 C -0.175 4.175 14 C -0.039 4.039 15 C -0.058 4.058 16 C 0.468 3.532 17 O -0.526 6.526 18 O -0.343 6.343 19 C 0.059 3.941 20 C 0.561 3.439 21 O -0.498 6.498 22 N -0.580 5.580 23 C 0.072 3.928 24 C 0.096 3.904 25 N -0.709 5.709 26 C 0.687 3.313 27 O -0.594 6.594 28 C -0.189 4.189 29 H 0.273 0.727 30 H 0.121 0.879 31 H 0.149 0.851 32 H 0.152 0.848 33 H 0.159 0.841 34 H 0.135 0.865 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.447 0.553 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.482 -32.209 -8.202 33.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.223 4.223 3 Si 0.840 3.160 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.179 1.179 7 C -0.491 4.491 8 H 0.119 0.881 9 O -0.140 6.140 10 C 0.060 3.940 11 C -0.259 4.259 12 C -0.090 4.090 13 C -0.194 4.194 14 C -0.039 4.039 15 C -0.095 4.095 16 C 0.312 3.688 17 O -0.414 6.414 18 O -0.259 6.259 19 C -0.018 4.018 20 C 0.350 3.650 21 O -0.369 6.369 22 N -0.329 5.329 23 C -0.048 4.048 24 C -0.027 4.027 25 N -0.372 5.372 26 C 0.387 3.613 27 O -0.472 6.472 28 C -0.209 4.209 29 H 0.081 0.919 30 H 0.138 0.862 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.176 0.824 34 H 0.153 0.847 35 H 0.120 0.880 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.129 0.871 39 H 0.140 0.860 40 H 0.142 0.858 41 H 0.292 0.708 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.669 -31.556 -7.915 32.540 hybrid contribution 0.035 1.305 -0.805 1.533 sum -0.634 -30.251 -8.720 31.489 Atomic orbital electron populations 1.70192 1.08051 1.28841 1.48911 1.26642 0.96913 1.02826 0.95872 0.84624 0.77364 0.74112 0.79942 1.18319 1.19553 1.17919 1.21800 0.92546 0.81437 1.53305 0.88092 1.83939 1.35908 1.12550 1.81625 1.19858 0.91734 0.87894 0.94466 1.21352 0.93044 1.00422 1.11090 1.21154 1.00407 0.91301 0.96182 1.21023 0.93225 0.98405 1.06714 1.19099 0.93975 0.92191 0.98641 1.20403 1.05534 0.93366 0.90156 1.24250 0.73252 0.77952 0.93392 1.90759 1.48358 1.60469 1.41777 1.86484 1.72394 1.36033 1.31024 1.22734 1.03454 0.93255 0.82332 1.19803 0.77354 0.85500 0.82382 1.90766 1.50053 1.67837 1.28239 1.46037 1.57717 1.23431 1.05698 1.23151 1.00811 0.81882 0.98941 1.22857 1.02271 0.89101 0.88506 1.45210 1.62198 1.21014 1.08733 1.16278 0.79247 0.83917 0.81876 1.91081 1.48100 1.24111 1.83939 1.20242 0.99476 0.90469 1.10669 0.91851 0.86168 0.83326 0.83078 0.82383 0.84731 0.87954 0.87131 0.86729 0.87066 0.86007 0.85768 0.70807 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.45 13.67 21.61 0.30 -58.16 16 2 C -0.03 -1.49 5.49 84.83 0.47 -1.03 16 3 Si 1.02 44.32 29.55 68.60 2.03 46.35 16 4 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 5 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 6 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 7 C -0.41 -25.16 9.49 67.92 0.64 -24.52 16 8 H 0.10 5.61 5.21 -2.91 -0.02 5.59 16 9 O -0.23 -14.76 9.76 -22.74 -0.22 -14.99 16 10 C 0.11 5.86 6.65 22.58 0.15 6.01 16 11 C -0.24 -11.06 9.17 22.39 0.21 -10.86 16 12 C -0.07 -2.63 10.04 22.25 0.22 -2.41 16 13 C -0.18 -5.78 9.70 22.30 0.22 -5.57 16 14 C -0.04 -1.39 4.37 -19.88 -0.09 -1.47 16 15 C -0.06 -1.51 5.94 29.10 0.17 -1.34 16 16 C 0.47 14.67 7.95 71.24 0.57 15.23 16 17 O -0.53 -21.00 15.78 21.96 0.35 -20.66 16 18 O -0.34 -9.83 9.75 -44.99 -0.44 -10.27 16 19 C 0.06 1.59 4.22 71.24 0.30 1.89 16 20 C 0.56 12.83 7.87 87.66 0.69 13.52 16 21 O -0.50 -13.22 16.81 15.92 0.27 -12.95 16 22 N -0.58 -9.23 3.00 -771.20 -2.32 -11.54 16 23 C 0.07 0.35 7.21 86.65 0.62 0.98 16 24 C 0.10 -0.13 8.06 86.64 0.70 0.56 16 25 N -0.71 -4.73 6.37 -477.39 -3.04 -7.77 16 26 C 0.69 11.92 8.51 179.57 1.53 13.45 16 27 O -0.59 -16.13 15.01 -3.83 -0.06 -16.19 16 28 C -0.19 -8.66 9.65 22.39 0.22 -8.45 16 29 H 0.27 15.83 8.31 -92.71 -0.77 15.05 16 30 H 0.12 5.57 5.64 -2.91 -0.02 5.55 16 31 H 0.15 4.19 8.06 -2.91 -0.02 4.17 16 32 H 0.15 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.16 2.76 8.08 -2.39 -0.02 2.74 16 34 H 0.13 3.04 8.08 -2.39 -0.02 3.02 16 35 H 0.10 3.02 7.57 -2.39 -0.02 3.00 16 36 H 0.11 3.03 7.56 -2.38 -0.02 3.02 16 37 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.12 -0.72 8.14 -2.38 -0.02 -0.74 16 40 H 0.12 -0.81 8.14 -2.39 -0.02 -0.83 16 41 H 0.45 1.48 8.96 -92.71 -0.83 0.65 16 42 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 Total: -1.00 -93.52 371.51 3.74 -89.78 By element: Atomic # 1 Polarization: 20.10 SS G_CDS: 0.26 Total: 20.37 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: 6.62 Total: -3.97 kcal Atomic # 7 Polarization: -72.41 SS G_CDS: -5.06 Total: -77.47 kcal Atomic # 8 Polarization: -74.95 SS G_CDS: -0.10 Total: -75.05 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.35 kcal Total: -93.52 3.74 -89.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000760638336.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.211 kcal (2) G-P(sol) polarization free energy of solvation -93.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds