Wall clock time and date at job start Wed Apr 1 2020 05:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31277 * 1 3 3 Si 1.86804 * 119.99862 * 2 1 4 4 H 1.48494 * 109.47479 * 269.99934 * 3 2 1 5 5 H 1.48497 * 109.47170 * 30.00290 * 3 2 1 6 6 H 1.48508 * 109.46898 * 150.00077 * 3 2 1 7 7 C 1.39005 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00323 * 180.02562 * 7 2 1 9 9 N 1.37298 * 119.99629 * 0.02562 * 7 2 1 10 10 C 1.36446 * 126.05200 * 179.97438 * 9 7 2 11 11 C 1.35780 * 107.49559 * 179.97438 * 10 9 7 12 12 N 1.40299 * 126.10027 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00287 * 179.97438 * 12 11 10 14 14 O 1.21413 * 120.00008 * 0.02562 * 13 12 11 15 15 C 1.49310 * 120.00416 * 179.72624 * 13 12 11 16 16 O 1.21363 * 119.99484 * 0.28183 * 15 13 12 17 17 N 1.34769 * 120.00238 * 180.27495 * 15 13 12 18 18 C 1.46507 * 120.00057 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47159 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.47271 * 180.02562 * 19 18 17 21 21 C 1.50696 * 109.47207 * 180.02562 * 20 19 18 22 22 C 1.33385 * 125.20748 * 90.00100 * 21 20 19 23 23 C 1.38417 * 114.92199 * 179.97438 * 22 21 20 24 24 C 1.33383 * 114.92535 * 359.97438 * 23 22 21 25 25 S 1.75887 * 125.19811 * 269.68971 * 21 20 19 26 26 C 1.40723 * 107.80390 * 0.26654 * 11 10 9 27 27 N 1.30879 * 108.37347 * 359.54991 * 26 11 10 28 28 H 0.97001 * 120.00185 * 359.97438 * 1 2 3 29 29 H 1.07995 * 126.25144 * 0.02562 * 10 9 7 30 30 H 0.97001 * 119.99599 * 0.02562 * 12 11 10 31 31 H 0.97000 * 120.00347 * 0.02562 * 17 15 13 32 32 H 1.08994 * 109.46849 * 300.00316 * 18 17 15 33 33 H 1.08998 * 109.46926 * 60.00124 * 18 17 15 34 34 H 1.09000 * 109.47439 * 300.00100 * 19 18 17 35 35 H 1.08998 * 109.47408 * 60.00042 * 19 18 17 36 36 H 1.09008 * 109.46645 * 299.99994 * 20 19 18 37 37 H 1.08998 * 109.47049 * 59.99604 * 20 19 18 38 38 H 1.08004 * 122.53730 * 359.95058 * 22 21 20 39 39 H 1.08012 * 122.53858 * 180.02562 * 23 22 21 40 40 H 1.08003 * 125.20940 * 180.02562 * 24 23 22 41 41 H 1.08003 * 125.81497 * 179.74168 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 2.4943 2.0465 -1.4000 5 1 1.4442 2.6527 0.7001 6 1 3.5444 1.4402 0.7001 7 6 2.0078 -1.2038 0.0005 8 1 3.0878 -1.2038 0.0010 9 7 1.3213 -2.3928 0.0005 10 6 1.8751 -3.6398 0.0005 11 6 0.8572 -4.5385 0.0011 12 7 0.9878 -5.9354 0.0008 13 6 -0.1115 -6.7150 0.0020 14 8 -1.2149 -6.2085 0.0028 15 6 0.0275 -8.2016 -0.0045 16 8 1.1304 -8.7079 -0.0057 17 7 -1.0719 -8.9812 -0.0089 18 6 -0.9355 -10.4399 -0.0148 19 6 -2.3242 -11.0819 -0.0196 20 6 -2.1818 -12.6053 -0.0250 21 6 -3.5497 -13.2377 -0.0304 22 6 -4.2453 -13.5563 -1.1230 23 6 -5.4818 -14.1292 -0.8807 24 6 -5.7902 -14.2764 0.4086 25 16 -4.4698 -13.6756 1.4032 26 6 -0.3521 -3.8189 -0.0048 27 7 -0.0715 -2.5406 0.0011 28 1 -0.4850 0.8400 0.0004 29 1 2.9302 -3.8700 0.0009 30 1 1.8694 -6.3400 0.0005 31 1 -1.9534 -8.5766 -0.0083 32 1 -0.3891 -10.7501 -0.9053 33 1 -0.3911 -10.7574 0.8745 34 1 -2.8711 -10.7717 0.8708 35 1 -2.8683 -10.7644 -0.9091 36 1 -1.6348 -12.9158 -0.9153 37 1 -1.6379 -12.9225 0.8647 38 1 -3.8721 -13.3802 -2.1211 39 1 -6.1463 -14.4348 -1.6756 40 1 -6.7085 -14.7030 0.7844 41 1 -1.3430 -4.2484 -0.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000770038761.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:01 Heat of formation + Delta-G solvation = 42.674872 kcal Electronic energy + Delta-G solvation = -25632.418241 eV Core-core repulsion = 21641.082754 eV Total energy + Delta-G solvation = -3991.335488 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.49966 -39.51853 -38.46979 -37.94809 -36.18488 -34.47899 -33.52628 -33.09651 -30.33862 -29.83794 -28.08531 -26.67772 -25.26186 -24.11907 -23.01600 -21.99403 -21.04525 -20.27572 -19.62759 -19.47114 -18.17416 -17.53886 -17.44078 -16.37359 -16.20348 -15.83262 -15.54295 -15.19503 -15.14447 -15.04821 -14.13705 -13.98628 -13.90114 -13.60405 -13.37065 -13.20951 -12.99519 -12.96363 -12.83757 -12.38669 -12.16762 -11.80723 -11.74381 -11.58113 -11.31552 -11.29525 -11.24514 -11.02952 -10.87483 -10.56032 -10.30045 -9.33269 -9.23546 -9.17682 -9.01581 -8.88265 -8.85231 -8.13634 -6.78855 -6.61039 -4.28463 0.60461 1.24978 1.62443 1.64130 2.34918 2.59361 2.92893 3.03528 3.08424 3.31898 3.70882 3.74659 3.95588 4.18657 4.36283 4.50261 4.58285 4.68550 4.75803 4.80294 4.97605 4.99516 5.02375 5.13941 5.22269 5.26661 5.39821 5.61288 5.74738 5.78351 5.90915 6.10397 6.14672 6.19509 6.35228 6.74576 6.88118 6.90537 7.15536 7.19227 7.74867 7.84204 8.08921 8.17681 8.47710 8.68702 9.30501 9.59136 10.34757 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.031689 B = 0.001446 C = 0.001406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.382979 B =19363.287778 C =19911.897113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.047 3.953 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.138 5.138 10 C -0.077 4.077 11 C -0.070 4.070 12 N -0.583 5.583 13 C 0.483 3.517 14 O -0.523 6.523 15 C 0.515 3.485 16 O -0.529 6.529 17 N -0.706 5.706 18 C 0.118 3.882 19 C -0.129 4.129 20 C -0.046 4.046 21 C -0.171 4.171 22 C -0.141 4.141 23 C -0.133 4.133 24 C -0.217 4.217 25 S 0.097 5.903 26 C -0.026 4.026 27 N -0.261 5.261 28 H 0.276 0.724 29 H 0.149 0.851 30 H 0.409 0.591 31 H 0.414 0.586 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.075 0.925 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.140 0.860 39 H 0.139 0.861 40 H 0.163 0.837 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.571 -25.693 -0.141 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.455 4.455 8 H 0.136 0.864 9 N 0.095 4.905 10 C -0.229 4.229 11 C -0.176 4.176 12 N -0.225 5.225 13 C 0.264 3.736 14 O -0.401 6.401 15 C 0.297 3.703 16 O -0.405 6.405 17 N -0.360 5.360 18 C -0.005 4.005 19 C -0.167 4.167 20 C -0.086 4.086 21 C -0.288 4.288 22 C -0.171 4.171 23 C -0.164 4.164 24 C -0.353 4.353 25 S 0.360 5.640 26 C -0.202 4.202 27 N -0.091 5.091 28 H 0.087 0.913 29 H 0.167 0.833 30 H 0.244 0.756 31 H 0.251 0.749 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.096 0.904 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.158 0.842 39 H 0.157 0.843 40 H 0.180 0.820 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -7.002 -24.265 1.429 25.296 hybrid contribution 0.420 -0.406 -1.523 1.631 sum -6.583 -24.671 -0.094 25.534 Atomic orbital electron populations 1.70204 1.06181 1.28153 1.34835 1.25664 0.95726 1.00356 0.95362 0.85804 0.79418 0.79781 0.79031 1.19526 1.20034 1.18731 1.19932 0.91782 0.80477 1.53264 0.86418 1.44566 1.04092 1.03362 1.38462 1.21305 0.96981 0.85203 1.19378 1.17261 0.94647 0.80630 1.25086 1.42145 1.08622 1.04595 1.67187 1.19643 0.85317 0.86875 0.81781 1.90659 1.25426 1.74292 1.49707 1.20289 0.84662 0.88326 0.77071 1.90733 1.25592 1.75761 1.48377 1.45696 1.09818 1.06604 1.73836 1.21424 0.97262 0.78829 1.02989 1.21835 0.96636 0.94248 1.03994 1.20047 0.90806 0.93684 1.04013 1.24480 1.01376 1.07253 0.95708 1.20162 0.95036 1.02465 0.99421 1.20193 0.97514 1.02195 0.96485 1.25630 1.03522 1.09239 0.96870 1.84399 1.10380 1.59477 1.09762 1.24147 0.97938 0.90754 1.07354 1.78263 0.90096 1.14978 1.25800 0.91344 0.83332 0.75583 0.74934 0.90848 0.90900 0.90624 0.90412 0.89383 0.90203 0.84227 0.84333 0.81991 0.80557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.13 11.81 55.50 0.66 -20.47 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 18.65 29.55 -169.99 -5.02 13.62 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 6 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 7 C -0.32 -8.42 10.25 -14.82 -0.15 -8.57 16 8 H 0.12 2.74 7.83 -52.49 -0.41 2.33 16 9 N -0.14 -3.75 3.73 -11.40 -0.04 -3.79 16 10 C -0.08 -1.81 11.50 -16.38 -0.19 -2.00 16 11 C -0.07 -1.63 6.90 -83.92 -0.58 -2.21 16 12 N -0.58 -10.99 5.45 -10.45 -0.06 -11.05 16 13 C 0.48 8.69 7.85 -11.65 -0.09 8.60 16 14 O -0.52 -10.51 13.62 5.44 0.07 -10.44 16 15 C 0.52 7.68 7.88 -11.65 -0.09 7.59 16 16 O -0.53 -8.62 16.47 5.49 0.09 -8.53 16 17 N -0.71 -8.00 5.55 -60.78 -0.34 -8.34 16 18 C 0.12 1.00 5.67 -4.04 -0.02 0.98 16 19 C -0.13 -0.83 5.31 -26.73 -0.14 -0.97 16 20 C -0.05 -0.26 5.71 -27.88 -0.16 -0.42 16 21 C -0.17 -1.19 5.76 -36.01 -0.21 -1.40 16 22 C -0.14 -0.96 10.05 -41.21 -0.41 -1.38 16 23 C -0.13 -0.88 10.18 -41.21 -0.42 -1.30 16 24 C -0.22 -1.42 11.23 29.04 0.33 -1.10 16 25 S 0.10 0.68 23.33 -107.50 -2.51 -1.83 16 26 C -0.03 -0.68 10.85 -17.02 -0.18 -0.86 16 27 N -0.26 -7.47 10.39 30.81 0.32 -7.15 16 28 H 0.28 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.15 2.92 8.06 -52.49 -0.42 2.50 16 30 H 0.41 6.64 8.29 -40.82 -0.34 6.30 16 31 H 0.41 4.36 7.94 -40.82 -0.32 4.04 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 0.42 8.14 -51.92 -0.42 0.00 16 37 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 39 H 0.14 0.67 8.06 -52.48 -0.42 0.24 16 40 H 0.16 0.74 8.06 -52.48 -0.42 0.32 16 41 H 0.18 4.43 5.92 -52.48 -0.31 4.12 16 LS Contribution 375.24 15.07 5.65 5.65 Total: -1.00 -33.15 375.24 -8.34 -41.49 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -4.75 Total: 12.78 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: -2.42 Total: -1.95 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.54 Total: -50.80 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: 0.16 Total: -18.96 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.02 Total: 13.62 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.51 Total: -1.83 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.15 -8.34 -41.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770038761.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.166 kcal (2) G-P(sol) polarization free energy of solvation -33.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds