Wall clock time and date at job start Wed Apr 1 2020 05:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31277 * 1 3 3 Si 1.86804 * 119.99862 * 2 1 4 4 H 1.48494 * 109.47479 * 269.99934 * 3 2 1 5 5 H 1.48497 * 109.47170 * 30.00290 * 3 2 1 6 6 H 1.48508 * 109.46898 * 150.00077 * 3 2 1 7 7 C 1.39005 * 120.00165 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00323 * 180.02562 * 7 2 1 9 9 N 1.37298 * 119.99629 * 0.02562 * 7 2 1 10 10 C 1.36446 * 126.05200 * 179.97438 * 9 7 2 11 11 C 1.35780 * 107.49559 * 179.97438 * 10 9 7 12 12 N 1.40299 * 126.10027 * 179.97438 * 11 10 9 13 13 C 1.34773 * 120.00287 * 179.97438 * 12 11 10 14 14 O 1.21413 * 120.00008 * 0.02562 * 13 12 11 15 15 C 1.49310 * 120.00416 * 179.72624 * 13 12 11 16 16 O 1.21363 * 119.99484 * 0.28183 * 15 13 12 17 17 N 1.34769 * 120.00238 * 180.27495 * 15 13 12 18 18 C 1.46507 * 120.00057 * 180.02562 * 17 15 13 19 19 C 1.52996 * 109.47159 * 180.02562 * 18 17 15 20 20 C 1.53000 * 109.47271 * 180.02562 * 19 18 17 21 21 C 1.50696 * 109.47207 * 180.02562 * 20 19 18 22 22 C 1.33385 * 125.20748 * 90.00100 * 21 20 19 23 23 C 1.38417 * 114.92199 * 179.97438 * 22 21 20 24 24 C 1.33383 * 114.92535 * 359.97438 * 23 22 21 25 25 S 1.75887 * 125.19811 * 269.68971 * 21 20 19 26 26 C 1.40723 * 107.80390 * 0.26654 * 11 10 9 27 27 N 1.30879 * 108.37347 * 359.54991 * 26 11 10 28 28 H 0.97001 * 120.00185 * 359.97438 * 1 2 3 29 29 H 1.07995 * 126.25144 * 0.02562 * 10 9 7 30 30 H 0.97001 * 119.99599 * 0.02562 * 12 11 10 31 31 H 0.97000 * 120.00347 * 0.02562 * 17 15 13 32 32 H 1.08994 * 109.46849 * 300.00316 * 18 17 15 33 33 H 1.08998 * 109.46926 * 60.00124 * 18 17 15 34 34 H 1.09000 * 109.47439 * 300.00100 * 19 18 17 35 35 H 1.08998 * 109.47408 * 60.00042 * 19 18 17 36 36 H 1.09008 * 109.46645 * 299.99994 * 20 19 18 37 37 H 1.08998 * 109.47049 * 59.99604 * 20 19 18 38 38 H 1.08004 * 122.53730 * 359.95058 * 22 21 20 39 39 H 1.08012 * 122.53858 * 180.02562 * 23 22 21 40 40 H 1.08003 * 125.20940 * 180.02562 * 24 23 22 41 41 H 1.08003 * 125.81497 * 179.74168 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3128 0.0000 0.0000 3 14 2.2468 1.6178 0.0000 4 1 2.4943 2.0465 -1.4000 5 1 1.4442 2.6527 0.7001 6 1 3.5444 1.4402 0.7001 7 6 2.0078 -1.2038 0.0005 8 1 3.0878 -1.2038 0.0010 9 7 1.3213 -2.3928 0.0005 10 6 1.8751 -3.6398 0.0005 11 6 0.8572 -4.5385 0.0011 12 7 0.9878 -5.9354 0.0008 13 6 -0.1115 -6.7150 0.0020 14 8 -1.2149 -6.2085 0.0028 15 6 0.0275 -8.2016 -0.0045 16 8 1.1304 -8.7079 -0.0057 17 7 -1.0719 -8.9812 -0.0089 18 6 -0.9355 -10.4399 -0.0148 19 6 -2.3242 -11.0819 -0.0196 20 6 -2.1818 -12.6053 -0.0250 21 6 -3.5497 -13.2377 -0.0304 22 6 -4.2453 -13.5563 -1.1230 23 6 -5.4818 -14.1292 -0.8807 24 6 -5.7902 -14.2764 0.4086 25 16 -4.4698 -13.6756 1.4032 26 6 -0.3521 -3.8189 -0.0048 27 7 -0.0715 -2.5406 0.0011 28 1 -0.4850 0.8400 0.0004 29 1 2.9302 -3.8700 0.0009 30 1 1.8694 -6.3400 0.0005 31 1 -1.9534 -8.5766 -0.0083 32 1 -0.3891 -10.7501 -0.9053 33 1 -0.3911 -10.7574 0.8745 34 1 -2.8711 -10.7717 0.8708 35 1 -2.8683 -10.7644 -0.9091 36 1 -1.6348 -12.9158 -0.9153 37 1 -1.6379 -12.9225 0.8647 38 1 -3.8721 -13.3802 -2.1211 39 1 -6.1463 -14.4348 -1.6756 40 1 -6.7085 -14.7030 0.7844 41 1 -1.3430 -4.2484 -0.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000770038761.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:00 Heat of formation + Delta-G solvation = 20.358013 kcal Electronic energy + Delta-G solvation = -25633.385973 eV Core-core repulsion = 21641.082754 eV Total energy + Delta-G solvation = -3992.303219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.01623 -41.15737 -39.47972 -38.89732 -37.06813 -36.03835 -35.03917 -34.22290 -32.29576 -30.54124 -29.84540 -27.62305 -26.82019 -25.24950 -23.84387 -22.89865 -22.60777 -21.69456 -21.20073 -20.10886 -19.63110 -19.11894 -18.12436 -17.54995 -17.44670 -17.17147 -16.74427 -16.53821 -16.25716 -16.06436 -15.67407 -15.39432 -15.01321 -14.83562 -14.74782 -14.45615 -13.91453 -13.72524 -13.51173 -13.38166 -13.36994 -12.99500 -12.91648 -12.89396 -12.75307 -12.46540 -12.37916 -12.08329 -11.96685 -11.82520 -11.52424 -11.06630 -10.87289 -10.59263 -10.29811 -10.14010 -9.53272 -9.37620 -8.62287 -8.48693 -6.26595 0.10705 0.29192 0.75708 1.13178 1.29842 1.31765 1.42852 1.59131 1.72924 1.87918 2.04739 2.12509 2.53840 2.59625 2.94794 3.07908 3.54088 3.63204 3.99152 4.19838 4.24615 4.29163 4.39918 4.47141 4.52579 4.63105 4.70665 4.75634 4.89424 4.96000 4.98417 5.07279 5.12359 5.21828 5.26821 5.30171 5.31124 5.43064 5.63835 5.90391 6.00783 6.25141 6.48860 6.67639 6.80666 7.07809 7.41361 7.62940 8.50526 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.031689 B = 0.001446 C = 0.001406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.382979 B =19363.287778 C =19911.897113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C -0.004 4.004 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.276 1.276 6 H -0.245 1.245 7 C -0.354 4.354 8 H 0.142 0.858 9 N -0.163 5.163 10 C -0.075 4.075 11 C -0.058 4.058 12 N -0.582 5.582 13 C 0.485 3.515 14 O -0.544 6.544 15 C 0.525 3.475 16 O -0.541 6.541 17 N -0.689 5.689 18 C 0.117 3.883 19 C -0.118 4.118 20 C -0.043 4.043 21 C -0.178 4.178 22 C -0.149 4.149 23 C -0.143 4.143 24 C -0.223 4.223 25 S 0.073 5.927 26 C -0.048 4.048 27 N -0.308 5.308 28 H 0.278 0.722 29 H 0.188 0.812 30 H 0.424 0.576 31 H 0.419 0.581 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.101 0.899 37 H 0.084 0.916 38 H 0.153 0.847 39 H 0.155 0.845 40 H 0.178 0.822 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.303 -27.039 -0.476 27.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.217 4.217 3 Si 0.838 3.162 4 H -0.189 1.189 5 H -0.201 1.201 6 H -0.168 1.168 7 C -0.485 4.485 8 H 0.159 0.841 9 N 0.069 4.931 10 C -0.225 4.225 11 C -0.164 4.164 12 N -0.227 5.227 13 C 0.267 3.733 14 O -0.423 6.423 15 C 0.304 3.696 16 O -0.418 6.418 17 N -0.342 5.342 18 C -0.005 4.005 19 C -0.157 4.157 20 C -0.082 4.082 21 C -0.295 4.295 22 C -0.179 4.179 23 C -0.173 4.173 24 C -0.358 4.358 25 S 0.336 5.664 26 C -0.223 4.223 27 N -0.140 5.140 28 H 0.088 0.912 29 H 0.205 0.795 30 H 0.261 0.739 31 H 0.256 0.744 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.119 0.881 37 H 0.103 0.897 38 H 0.170 0.830 39 H 0.172 0.828 40 H 0.196 0.804 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -5.740 -25.681 1.094 26.337 hybrid contribution -0.066 -0.229 -1.431 1.451 sum -5.806 -25.910 -0.337 26.555 Atomic orbital electron populations 1.70373 1.08396 1.29271 1.36824 1.26876 0.96484 1.04287 0.94002 0.84586 0.78308 0.74028 0.79264 1.18870 1.20122 1.16787 1.20671 0.93074 0.80823 1.53969 0.84064 1.44841 1.03724 1.04743 1.39791 1.22008 0.98851 0.84178 1.17510 1.17311 0.93476 0.82613 1.23043 1.42089 1.09867 1.02922 1.67848 1.20331 0.84593 0.88465 0.79950 1.90650 1.26347 1.75240 1.50015 1.19606 0.85375 0.86677 0.77894 1.90739 1.26106 1.75330 1.49658 1.45750 1.09028 1.07750 1.71666 1.21646 0.98697 0.76644 1.03519 1.21739 0.95242 0.94646 1.04038 1.20053 0.90428 0.92824 1.04931 1.24640 1.01843 1.07604 0.95458 1.20425 0.95188 1.02256 1.00039 1.20473 0.97816 1.02069 0.96989 1.25898 1.03868 1.09164 0.96847 1.84454 1.11240 1.60024 1.10633 1.24250 0.98930 0.90766 1.08377 1.78158 0.91859 1.16482 1.27481 0.91236 0.79471 0.73883 0.74366 0.90121 0.90493 0.90878 0.90132 0.88097 0.89706 0.82975 0.82751 0.80450 0.80739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -46.66 11.81 21.66 0.26 -46.40 16 2 C 0.00 -0.22 5.50 84.96 0.47 0.24 16 3 Si 1.02 38.00 29.55 68.60 2.03 40.03 16 4 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 5 H -0.28 -10.19 7.11 99.48 0.71 -9.49 16 6 H -0.24 -8.30 7.11 99.48 0.71 -7.59 16 7 C -0.35 -18.55 10.25 84.02 0.86 -17.69 16 8 H 0.14 6.40 7.83 -2.91 -0.02 6.38 16 9 N -0.16 -8.97 3.73 -189.98 -0.71 -9.67 16 10 C -0.07 -3.46 11.50 83.41 0.96 -2.50 16 11 C -0.06 -2.68 6.90 37.82 0.26 -2.41 16 12 N -0.58 -21.34 5.45 -305.32 -1.66 -23.01 16 13 C 0.48 17.00 7.85 87.23 0.69 17.69 16 14 O -0.54 -21.80 13.62 -3.44 -0.05 -21.85 16 15 C 0.52 14.73 7.88 87.23 0.69 15.42 16 16 O -0.54 -16.49 16.47 -3.29 -0.05 -16.54 16 17 N -0.69 -14.31 5.55 -464.56 -2.58 -16.89 16 18 C 0.12 1.70 5.67 86.38 0.49 2.19 16 19 C -0.12 -1.27 5.31 30.59 0.16 -1.11 16 20 C -0.04 -0.40 5.71 29.85 0.17 -0.23 16 21 C -0.18 -2.22 5.76 24.59 0.14 -2.08 16 22 C -0.15 -1.80 10.05 21.21 0.21 -1.58 16 23 C -0.14 -1.67 10.18 21.21 0.22 -1.46 16 24 C -0.22 -2.66 11.23 66.72 0.75 -1.91 16 25 S 0.07 0.98 23.33 -56.49 -1.32 -0.34 16 26 C -0.05 -2.54 10.85 85.44 0.93 -1.62 16 27 N -0.31 -18.27 10.39 -56.43 -0.59 -18.86 16 28 H 0.28 14.48 8.31 -92.71 -0.77 13.71 16 29 H 0.19 6.92 8.06 -2.91 -0.02 6.90 16 30 H 0.42 13.00 8.29 -92.71 -0.77 12.23 16 31 H 0.42 8.13 7.94 -92.71 -0.74 7.40 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.12 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 37 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 39 H 0.15 1.21 8.06 -2.90 -0.02 1.19 16 40 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 41 H 0.18 9.10 5.92 -2.91 -0.02 9.09 16 Total: -1.00 -73.47 375.24 1.91 -71.56 By element: Atomic # 1 Polarization: 39.42 SS G_CDS: -0.40 Total: 39.02 kcal Atomic # 6 Polarization: -4.03 SS G_CDS: 6.99 Total: 2.96 kcal Atomic # 7 Polarization: -109.55 SS G_CDS: -5.28 Total: -114.83 kcal Atomic # 8 Polarization: -38.29 SS G_CDS: -0.10 Total: -38.39 kcal Atomic # 14 Polarization: 38.00 SS G_CDS: 2.03 Total: 40.03 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -1.32 Total: -0.34 kcal Total: -73.47 1.91 -71.56 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000770038761.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.914 kcal (2) G-P(sol) polarization free energy of solvation -73.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds