Wall clock time and date at job start Wed Apr 1 2020 05:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30746 * 1 3 3 Si 1.86794 * 119.99854 * 2 1 4 4 H 1.48507 * 109.47082 * 269.99852 * 3 2 1 5 5 H 1.48496 * 109.47328 * 29.99825 * 3 2 1 6 6 H 1.48502 * 109.47218 * 149.99788 * 3 2 1 7 7 C 1.40029 * 119.99764 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99765 * 170.17964 * 7 2 1 9 9 C 1.41537 * 120.00396 * 350.18128 * 7 2 1 10 10 C 1.41181 * 120.99812 * 151.67674 * 9 7 2 11 11 C 1.37587 * 119.01442 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.11073 * 359.73893 * 11 10 9 13 13 C 1.32469 * 122.23192 * 0.53095 * 12 11 10 14 14 N 1.39468 * 119.57933 * 179.74506 * 13 12 11 15 15 C 1.34773 * 119.99874 * 5.10350 * 14 13 12 16 16 O 1.21273 * 120.00170 * 354.96566 * 15 14 13 17 17 C 1.50699 * 119.99618 * 174.70008 * 15 14 13 18 18 C 1.53005 * 109.47191 * 180.26760 * 17 15 14 19 19 N 1.46495 * 109.47231 * 179.97438 * 18 17 15 20 20 C 1.34559 * 119.50876 * 269.72671 * 19 18 17 21 21 O 1.21241 * 120.01555 * 4.44354 * 20 19 18 22 22 C 1.50772 * 119.99047 * 184.23181 * 20 19 18 23 23 C 1.53043 * 109.28726 * 326.19018 * 22 20 19 24 24 N 1.46410 * 109.51770 * 46.52080 * 23 22 20 25 25 C 1.34285 * 120.92764 * 324.14522 * 24 23 22 26 26 S 1.71208 * 119.20716 * 185.71120 * 25 24 23 27 27 C 1.38603 * 120.83843 * 359.47250 * 13 12 11 28 28 H 0.96996 * 120.00347 * 0.02562 * 1 2 3 29 29 H 1.07997 * 120.48880 * 359.97438 * 10 9 7 30 30 H 1.08001 * 119.44199 * 179.97438 * 11 10 9 31 31 H 0.96999 * 119.99412 * 185.09196 * 14 13 12 32 32 H 1.08993 * 109.47501 * 300.26779 * 17 15 14 33 33 H 1.08998 * 109.47365 * 60.27184 * 17 15 14 34 34 H 1.08993 * 109.46914 * 300.00379 * 18 17 15 35 35 H 1.08998 * 109.46620 * 59.99968 * 18 17 15 36 36 H 1.09000 * 109.61245 * 206.16056 * 22 20 19 37 37 H 1.08999 * 109.32434 * 86.04757 * 22 20 19 38 38 H 1.08998 * 109.46361 * 286.50268 * 23 22 20 39 39 H 1.09002 * 109.45269 * 166.52685 * 23 22 20 40 40 H 0.97002 * 119.53195 * 144.11896 * 24 23 22 41 41 H 1.07994 * 120.59804 * 180.27515 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0464 -1.4001 5 1 1.4389 2.6526 0.7000 6 1 3.5390 1.4402 0.7001 7 6 2.0076 -1.2127 0.0005 8 1 3.0758 -1.2196 -0.1590 9 6 1.3155 -2.4294 0.2101 10 6 1.7910 -3.6402 -0.3386 11 6 1.0856 -4.7991 -0.1096 12 7 -0.0186 -4.7941 0.6152 13 6 -0.5092 -3.6847 1.1476 14 7 -1.6826 -3.7423 1.8993 15 6 -2.2537 -4.9333 2.1668 16 8 -1.8001 -5.9466 1.6787 17 6 -3.4523 -5.0066 3.0772 18 6 -3.8974 -6.4637 3.2182 19 7 -5.0623 -6.5350 4.1038 20 6 -4.8800 -6.7002 5.4267 21 8 -3.7588 -6.7081 5.8881 22 6 -6.0705 -6.8706 6.3360 23 6 -7.2388 -6.0397 5.8004 24 7 -7.3769 -6.2616 4.3598 25 6 -6.2967 -6.4400 3.5823 26 16 -6.4974 -6.5486 1.8855 27 6 0.1318 -2.4684 0.9717 28 1 -0.4850 0.8400 -0.0004 29 1 2.6945 -3.6563 -0.9299 30 1 1.4429 -5.7292 -0.5264 31 1 -2.0874 -2.9250 2.2296 32 1 -3.1885 -4.6108 4.0579 33 1 -4.2662 -4.4174 2.6546 34 1 -4.1613 -6.8594 2.2376 35 1 -3.0836 -7.0528 3.6408 36 1 -5.8146 -6.5341 7.3407 37 1 -6.3547 -7.9225 6.3647 38 1 -7.0492 -4.9830 5.9887 39 1 -8.1580 -6.3392 6.3038 40 1 -8.2612 -6.2802 3.9615 41 1 -0.2692 -1.5671 1.4112 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000847584904.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:55 Heat of formation + Delta-G solvation = -28.285866 kcal Electronic energy + Delta-G solvation = -27195.425688 eV Core-core repulsion = 23201.013112 eV Total energy + Delta-G solvation = -3994.412576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.88762 -41.27330 -39.63831 -39.25442 -37.11384 -36.12315 -35.50106 -32.94489 -32.78048 -32.37828 -30.37935 -27.92486 -27.21909 -26.15739 -24.92458 -23.86104 -23.08930 -21.33889 -20.13340 -20.03994 -19.47019 -19.24772 -18.81727 -17.80104 -17.50979 -16.97094 -16.80082 -16.71469 -16.26937 -16.07570 -15.81157 -15.63534 -15.27981 -15.07541 -14.92466 -14.59687 -14.34000 -14.22629 -13.96375 -13.52123 -13.41108 -13.19012 -12.87256 -12.71137 -12.69444 -12.50946 -12.29332 -12.12547 -11.91303 -11.50698 -11.48044 -11.18601 -11.10189 -10.73004 -9.91999 -9.62867 -9.29763 -8.95525 -8.89626 -8.60004 -6.58371 -0.53132 0.49268 0.70902 0.99043 1.04807 1.17341 1.40993 1.51636 1.55923 1.78889 1.81919 2.13858 2.20872 2.82176 3.02182 3.39861 3.49057 3.64777 3.71901 3.76634 3.97577 4.13047 4.15552 4.27715 4.36238 4.51944 4.59015 4.70344 4.73486 4.80302 4.83922 4.90675 5.02473 5.07116 5.22728 5.46087 5.61878 5.64838 5.78788 5.90737 6.11633 6.28000 6.44453 6.56549 6.78046 6.83257 7.23459 7.80620 8.30102 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.016646 B = 0.002275 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.667101 B =12307.395202 C =12688.748381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.820 5.820 2 C 0.036 3.964 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.264 1.264 6 H -0.258 1.258 7 C -0.486 4.486 8 H 0.084 0.916 9 C 0.113 3.887 10 C -0.294 4.294 11 C 0.111 3.889 12 N -0.577 5.577 13 C 0.331 3.669 14 N -0.651 5.651 15 C 0.506 3.494 16 O -0.520 6.520 17 C -0.129 4.129 18 C 0.116 3.884 19 N -0.531 5.531 20 C 0.502 3.498 21 O -0.511 6.511 22 C -0.150 4.150 23 C 0.084 3.916 24 N -0.630 5.630 25 C 0.587 3.413 26 S -0.688 6.688 27 C -0.252 4.252 28 H 0.291 0.709 29 H 0.118 0.882 30 H 0.150 0.850 31 H 0.423 0.577 32 H 0.114 0.886 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.092 0.908 36 H 0.160 0.840 37 H 0.139 0.861 38 H 0.108 0.892 39 H 0.168 0.832 40 H 0.449 0.551 41 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.842 -5.382 19.099 28.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.446 5.446 2 C -0.180 4.180 3 Si 0.811 3.189 4 H -0.189 1.189 5 H -0.188 1.188 6 H -0.182 1.182 7 C -0.516 4.516 8 H 0.102 0.898 9 C 0.105 3.895 10 C -0.317 4.317 11 C -0.043 4.043 12 N -0.297 5.297 13 C 0.106 3.894 14 N -0.299 5.299 15 C 0.292 3.708 16 O -0.393 6.393 17 C -0.170 4.170 18 C -0.007 4.007 19 N -0.254 5.254 20 C 0.291 3.709 21 O -0.382 6.382 22 C -0.189 4.189 23 C -0.041 4.041 24 N -0.260 5.260 25 C 0.228 3.772 26 S -0.556 6.556 27 C -0.278 4.278 28 H 0.102 0.898 29 H 0.136 0.864 30 H 0.168 0.832 31 H 0.261 0.739 32 H 0.132 0.868 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.110 0.890 36 H 0.177 0.823 37 H 0.157 0.843 38 H 0.126 0.874 39 H 0.186 0.814 40 H 0.293 0.707 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -19.675 -6.859 18.458 27.836 hybrid contribution 0.740 1.777 0.003 1.925 sum -18.936 -5.081 18.461 26.929 Atomic orbital electron populations 1.69792 1.08933 1.30821 1.35075 1.26830 0.95702 1.04563 0.90898 0.85076 0.78971 0.75418 0.79473 1.18866 1.18792 1.18196 1.19845 0.96186 0.90862 1.44749 0.89801 1.18038 0.91049 0.93369 0.87047 1.22139 1.05284 0.94427 1.09876 1.22237 0.90333 0.97591 0.94116 1.67342 1.16337 1.28827 1.17148 1.18460 0.87768 0.90456 0.92765 1.43435 1.23841 1.10390 1.52211 1.20992 0.84981 0.83020 0.81816 1.90773 1.63066 1.34946 1.50477 1.21706 0.96041 0.98697 1.00533 1.21640 0.85538 0.96958 0.96599 1.45745 1.06047 1.63902 1.09752 1.22476 0.93411 0.73638 0.81409 1.90833 1.27652 1.45301 1.74430 1.22496 0.89725 1.06338 1.00380 1.22565 1.02078 1.02355 0.77083 1.45550 1.07384 1.63502 1.09531 1.21735 0.82365 0.79042 0.94076 1.94186 1.92534 1.73802 0.95105 1.21579 1.01962 0.95623 1.08609 0.89804 0.86437 0.83237 0.73936 0.86805 0.86857 0.86859 0.88968 0.82263 0.84319 0.87423 0.81446 0.70713 0.85618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.05 10.83 21.84 0.24 -40.81 16 2 C 0.04 1.75 5.30 85.29 0.45 2.20 16 3 Si 0.99 36.60 29.57 68.60 2.03 38.62 16 4 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 5 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 6 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 7 C -0.49 -25.63 9.13 23.52 0.21 -25.42 16 8 H 0.08 4.23 7.87 -2.91 -0.02 4.20 16 9 C 0.11 6.22 5.58 -21.11 -0.12 6.10 16 10 C -0.29 -15.05 9.90 22.84 0.23 -14.82 16 11 C 0.11 5.59 11.15 84.50 0.94 6.53 16 12 N -0.58 -31.07 7.85 -193.53 -1.52 -32.59 16 13 C 0.33 16.92 7.42 132.75 0.98 17.91 16 14 N -0.65 -26.75 5.39 -308.67 -1.66 -28.41 16 15 C 0.51 19.93 7.79 87.66 0.68 20.61 16 16 O -0.52 -25.14 14.24 -3.01 -0.04 -25.18 16 17 C -0.13 -3.52 6.03 29.85 0.18 -3.34 16 18 C 0.12 3.20 4.23 86.38 0.37 3.57 16 19 N -0.53 -10.07 2.54 -644.25 -1.64 -11.71 16 20 C 0.50 7.42 7.48 87.71 0.66 8.08 16 21 O -0.51 -11.98 16.66 -2.91 -0.05 -12.03 16 22 C -0.15 -0.08 6.27 29.89 0.19 0.11 16 23 C 0.08 -0.33 7.25 86.41 0.63 0.29 16 24 N -0.63 -3.15 5.57 -351.04 -1.96 -5.10 16 25 C 0.59 10.06 7.52 179.34 1.35 11.41 16 26 S -0.69 -20.48 28.47 -56.49 -1.61 -22.09 16 27 C -0.25 -13.38 8.59 22.99 0.20 -13.19 16 28 H 0.29 13.03 8.29 -92.71 -0.77 12.26 16 29 H 0.12 5.48 8.06 -2.91 -0.02 5.45 16 30 H 0.15 6.51 8.06 -2.91 -0.02 6.49 16 31 H 0.42 14.14 8.70 -92.71 -0.81 13.33 16 32 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.11 3.78 6.19 -2.57 -0.02 3.77 16 35 H 0.09 2.84 7.40 -2.39 -0.02 2.82 16 36 H 0.16 -0.57 8.14 -2.39 -0.02 -0.59 16 37 H 0.14 -0.34 8.14 -2.39 -0.02 -0.36 16 38 H 0.11 -0.54 8.14 -2.39 -0.02 -0.56 16 39 H 0.17 -2.10 8.14 -2.39 -0.02 -2.11 16 40 H 0.45 1.02 8.75 -92.71 -0.81 0.21 16 41 H 0.13 6.59 6.27 -2.91 -0.02 6.58 16 Total: -1.00 -88.53 364.51 0.23 -88.30 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: -0.50 Total: 30.98 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: 6.95 Total: 20.03 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -6.54 Total: -118.63 kcal Atomic # 8 Polarization: -37.12 SS G_CDS: -0.09 Total: -37.22 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.62 kcal Atomic # 16 Polarization: -20.48 SS G_CDS: -1.61 Total: -22.09 kcal Total: -88.53 0.23 -88.30 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000847584904.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.011 kcal (2) G-P(sol) polarization free energy of solvation -88.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds