Wall clock time and date at job start Wed Apr 1 2020 04:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86807 * 120.00008 * 2 1 4 4 H 1.48503 * 109.46729 * 269.99568 * 3 2 1 5 5 H 1.48505 * 109.47010 * 29.99604 * 3 2 1 6 6 H 1.48500 * 109.47100 * 149.99929 * 3 2 1 7 7 C 1.38651 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99536 * 0.02562 * 7 2 1 9 9 O 1.34827 * 119.99996 * 180.02562 * 7 2 1 10 10 C 1.35765 * 116.99516 * 185.07499 * 9 7 2 11 11 C 1.38905 * 120.05708 * 354.39297 * 10 9 7 12 12 C 1.38061 * 119.94062 * 179.70570 * 11 10 9 13 13 C 1.38433 * 120.06091 * 0.27788 * 12 11 10 14 14 Cl 1.73603 * 119.94732 * 179.97438 * 13 12 11 15 15 C 1.38389 * 120.10685 * 359.97438 * 13 12 11 16 16 C 1.38107 * 120.06058 * 359.97438 * 15 13 12 17 17 C 1.50697 * 120.03146 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.47227 * 264.99933 * 17 16 15 19 19 C 1.35312 * 125.86628 * 124.99913 * 18 17 16 20 20 C 1.35352 * 106.17510 * 180.02562 * 19 18 17 21 21 C 1.50702 * 126.75152 * 180.02562 * 20 19 18 22 22 N 1.46892 * 109.47326 * 94.99769 * 21 20 19 23 23 C 1.46902 * 111.00051 * 179.97438 * 22 21 20 24 24 C 1.52998 * 117.50024 * 223.62415 * 23 22 21 25 25 C 1.52999 * 117.50076 * 154.99762 * 23 22 21 26 26 N 1.33769 * 106.49405 * 359.97438 * 20 19 18 27 27 N 1.28637 * 108.88675 * 359.74167 * 26 20 19 28 28 H 0.97002 * 119.99890 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.02446 * 359.97438 * 11 10 9 30 30 H 1.07997 * 119.97314 * 180.30588 * 12 11 10 31 31 H 1.08007 * 119.96893 * 179.97438 * 15 13 12 32 32 H 1.09005 * 109.47000 * 24.99823 * 17 16 15 33 33 H 1.09000 * 109.47269 * 144.99324 * 17 16 15 34 34 H 1.08004 * 126.91758 * 0.02616 * 19 18 17 35 35 H 1.08998 * 109.46668 * 214.99787 * 21 20 19 36 36 H 1.08997 * 109.46993 * 334.99402 * 21 20 19 37 37 H 1.00902 * 111.00443 * 56.04751 * 22 21 20 38 38 H 1.08998 * 115.54968 * 9.33036 * 23 22 21 39 39 H 1.09007 * 117.49927 * 359.97438 * 24 23 22 40 40 H 1.09000 * 117.49885 * 145.02106 * 24 23 22 41 41 H 1.08997 * 117.50296 * 214.97715 * 25 23 22 42 42 H 1.09001 * 117.49644 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4470 2.6528 0.7000 6 1 3.5472 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3572 -1.2007 0.0011 10 6 3.9735 -2.4056 -0.1054 11 6 3.2232 -3.5745 -0.0913 12 6 3.8519 -4.7983 -0.2059 13 6 5.2293 -4.8615 -0.3290 14 17 6.0169 -6.4019 -0.4722 15 6 5.9795 -3.6986 -0.3380 16 6 5.3554 -2.4718 -0.2248 17 6 6.1729 -1.2059 -0.2353 18 7 6.4565 -0.7963 1.1424 19 6 7.6833 -0.5637 1.6637 20 6 7.4837 -0.2125 2.9555 21 6 8.5422 0.1473 3.9661 22 7 8.7080 1.6063 4.0033 23 6 9.7340 1.9948 4.9802 24 6 9.4270 3.1847 5.8917 25 6 10.4481 3.3301 4.7615 26 7 6.1619 -0.2464 3.1584 27 7 5.5812 -0.5902 2.0632 28 1 -0.4850 0.8401 -0.0004 29 1 2.1486 -3.5258 0.0048 30 1 3.2687 -5.7072 -0.2000 31 1 7.0541 -3.7505 -0.4338 32 1 7.1106 -1.3833 -0.7620 33 1 5.6155 -0.4176 -0.7414 34 1 8.6312 -0.6424 1.1520 35 1 8.2404 -0.2094 4.9508 36 1 9.4865 -0.3187 3.6846 37 1 7.8309 2.0651 4.1988 38 1 10.3168 1.1754 5.4009 39 1 8.4639 3.6795 5.7662 40 1 9.8079 3.1482 6.9124 41 1 11.5006 3.3894 5.0387 42 1 10.1569 3.9202 3.8925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881303296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:54 Heat of formation + Delta-G solvation = 122.889486 kcal Electronic energy + Delta-G solvation = -27303.773112 eV Core-core repulsion = 23313.872285 eV Total energy + Delta-G solvation = -3989.900827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.90731 -39.63622 -38.08094 -37.15568 -35.91727 -34.92933 -33.73995 -32.57150 -31.12524 -30.43072 -29.26743 -26.77484 -25.53309 -25.37984 -22.58578 -22.42527 -21.84575 -21.42610 -21.22661 -20.40960 -18.15594 -17.65174 -16.99850 -16.38620 -16.00563 -15.82402 -15.50775 -15.25007 -14.82998 -14.37887 -14.14234 -14.09325 -13.92977 -13.37912 -13.26503 -12.91659 -12.76559 -12.61449 -12.57613 -12.42198 -12.31876 -11.73042 -11.57295 -11.21219 -11.16060 -11.09373 -11.06990 -10.64671 -10.61180 -10.55474 -10.47838 -10.28529 -9.83512 -9.54206 -9.00272 -8.97189 -8.65966 -8.40376 -7.56599 -6.59453 -4.24693 1.50527 1.82338 1.96488 2.59783 2.75162 2.84409 3.14089 3.18744 3.38063 3.60841 4.00003 4.11172 4.13940 4.44509 4.55331 4.68563 4.72896 4.75702 4.89342 4.92488 4.94407 4.98248 5.15997 5.28530 5.32830 5.43423 5.45024 5.51843 5.52795 5.68849 5.73643 5.85766 5.93286 6.07353 6.12938 6.31409 6.35131 6.54911 6.66201 6.83398 6.88422 6.89935 7.13498 7.19573 7.54134 7.80884 8.74137 8.92489 9.29388 10.46502 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.007733 B = 0.003616 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3619.932846 B = 7741.846650 C =10844.195703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.073 3.927 3 Si 0.897 3.103 4 H -0.274 1.274 5 H -0.280 1.280 6 H -0.249 1.249 7 C -0.389 4.389 8 H 0.110 0.890 9 O -0.184 6.184 10 C 0.192 3.808 11 C -0.212 4.212 12 C -0.046 4.046 13 C -0.128 4.128 14 Cl -0.100 7.100 15 C -0.038 4.038 16 C -0.197 4.197 17 C 0.174 3.826 18 N -0.278 5.278 19 C -0.042 4.042 20 C -0.036 4.036 21 C 0.155 3.845 22 N -0.656 5.656 23 C 0.024 3.976 24 C -0.208 4.208 25 C -0.172 4.172 26 N -0.280 5.280 27 N -0.042 5.042 28 H 0.283 0.717 29 H 0.145 0.855 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.108 0.892 33 H 0.108 0.892 34 H 0.185 0.815 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.350 0.650 38 H 0.110 0.890 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.488 -0.727 3.027 18.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.133 4.133 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.173 1.173 7 C -0.463 4.463 8 H 0.127 0.873 9 O -0.085 6.085 10 C 0.135 3.865 11 C -0.232 4.232 12 C -0.065 4.065 13 C -0.155 4.155 14 Cl -0.071 7.071 15 C -0.057 4.057 16 C -0.200 4.200 17 C 0.055 3.945 18 N -0.072 5.072 19 C -0.194 4.194 20 C -0.175 4.175 21 C 0.024 3.976 22 N -0.287 5.287 23 C -0.087 4.087 24 C -0.247 4.247 25 C -0.211 4.211 26 N -0.147 5.147 27 N -0.022 5.022 28 H 0.093 0.907 29 H 0.163 0.837 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.202 0.798 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.170 0.830 38 H 0.128 0.872 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.112 0.888 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 17.293 -0.461 2.809 17.525 hybrid contribution 0.756 0.299 0.351 0.886 sum 18.049 -0.162 3.160 18.324 Atomic orbital electron populations 1.69631 1.05708 1.29004 1.45739 1.24450 0.94965 0.98968 0.94892 0.86277 0.81350 0.81304 0.78859 1.19940 1.20528 1.17251 1.20797 0.76464 0.96821 1.52247 0.87294 1.83597 1.22941 1.25164 1.76783 1.18805 0.90657 0.85889 0.91122 1.21243 1.01627 0.90926 1.09372 1.20772 0.92070 0.97895 0.95781 1.20239 0.92697 0.85239 1.17310 1.98293 1.81101 1.30536 1.97210 1.20351 0.98695 0.89709 0.96964 1.18439 0.91131 0.93088 1.17354 1.20669 1.00916 0.96330 0.76591 1.47778 1.04658 1.42529 1.12211 1.23286 0.91329 1.09099 0.95669 1.21649 0.93249 1.08111 0.94477 1.19997 0.94810 0.87730 0.95040 1.60268 1.11874 1.07284 1.49297 1.22390 0.98498 0.91958 0.95835 1.23435 1.01269 1.03870 0.96107 1.23113 0.97320 1.00490 1.00135 1.75116 1.05245 1.16893 1.17456 1.78638 1.16708 1.15177 0.91670 0.90658 0.83706 0.85876 0.85822 0.87417 0.87401 0.79839 0.93226 0.89434 0.83021 0.87205 0.88644 0.88801 0.88827 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.99 13.96 55.48 0.77 -23.21 16 2 C 0.07 1.96 5.49 -17.52 -0.10 1.86 16 3 Si 0.90 21.07 28.62 -169.99 -4.86 16.21 16 4 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.25 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.39 -10.21 9.95 30.88 0.31 -9.90 16 8 H 0.11 2.92 5.44 -52.49 -0.29 2.63 16 9 O -0.18 -4.39 7.72 0.01 0.00 -4.39 16 10 C 0.19 3.98 6.62 -39.11 -0.26 3.73 16 11 C -0.21 -4.20 9.17 -39.40 -0.36 -4.56 16 12 C -0.05 -0.78 9.82 -39.57 -0.39 -1.17 16 13 C -0.13 -2.05 6.32 -39.45 -0.25 -2.30 16 14 Cl -0.10 -1.40 28.95 -51.86 -1.50 -2.90 16 15 C -0.04 -0.58 9.46 -39.57 -0.37 -0.95 16 16 C -0.20 -3.40 5.27 -104.44 -0.55 -3.95 16 17 C 0.17 2.58 6.31 -5.20 -0.03 2.55 16 18 N -0.28 -4.65 3.43 -62.44 -0.21 -4.86 16 19 C -0.04 -0.57 11.50 -17.05 -0.20 -0.77 16 20 C -0.04 -0.54 6.76 -82.78 -0.56 -1.10 16 21 C 0.15 1.73 6.10 -4.98 -0.03 1.70 16 22 N -0.66 -7.27 6.77 -108.00 -0.73 -8.00 16 23 C 0.02 0.21 6.31 -67.71 -0.43 -0.21 16 24 C -0.21 -1.71 10.23 -26.73 -0.27 -1.99 16 25 C -0.17 -1.42 10.46 -26.73 -0.28 -1.69 16 26 N -0.28 -5.41 12.41 33.29 0.41 -4.99 16 27 N -0.04 -0.88 12.93 60.35 0.78 -0.10 16 28 H 0.28 7.28 8.31 -40.82 -0.34 6.94 16 29 H 0.15 2.99 5.64 -52.49 -0.30 2.70 16 30 H 0.12 1.83 8.06 -52.49 -0.42 1.41 16 31 H 0.12 1.54 8.06 -52.48 -0.42 1.12 16 32 H 0.11 1.08 7.98 -51.93 -0.41 0.66 16 33 H 0.11 1.70 7.69 -51.93 -0.40 1.30 16 34 H 0.18 1.68 8.06 -52.48 -0.42 1.25 16 35 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.35 4.26 8.51 -39.29 -0.33 3.93 16 38 H 0.11 0.84 7.90 -51.93 -0.41 0.43 16 39 H 0.10 0.83 8.09 -51.92 -0.42 0.41 16 40 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 380.30 15.07 5.73 5.73 Total: -1.00 -30.14 380.30 -8.46 -38.60 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.08 Total: 6.67 kcal Atomic # 6 Polarization: -14.98 SS G_CDS: -3.77 Total: -18.76 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 1.02 Total: -41.16 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: 0.00 Total: -4.39 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.86 Total: 16.21 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -1.50 Total: -2.90 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -30.14 -8.46 -38.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881303296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.488 kcal (2) G-P(sol) polarization free energy of solvation -30.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.599 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds