Wall clock time and date at job start Wed Apr 1 2020 04:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31558 * 1 3 3 Si 1.86807 * 120.00008 * 2 1 4 4 H 1.48503 * 109.46729 * 269.99568 * 3 2 1 5 5 H 1.48505 * 109.47010 * 29.99604 * 3 2 1 6 6 H 1.48500 * 109.47100 * 149.99929 * 3 2 1 7 7 C 1.38651 * 120.00252 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99536 * 0.02562 * 7 2 1 9 9 O 1.34827 * 119.99996 * 180.02562 * 7 2 1 10 10 C 1.35765 * 116.99516 * 185.07499 * 9 7 2 11 11 C 1.38905 * 120.05708 * 354.39297 * 10 9 7 12 12 C 1.38061 * 119.94062 * 179.70570 * 11 10 9 13 13 C 1.38433 * 120.06091 * 0.27788 * 12 11 10 14 14 Cl 1.73603 * 119.94732 * 179.97438 * 13 12 11 15 15 C 1.38389 * 120.10685 * 359.97438 * 13 12 11 16 16 C 1.38107 * 120.06058 * 359.97438 * 15 13 12 17 17 C 1.50697 * 120.03146 * 180.02562 * 16 15 13 18 18 N 1.46500 * 109.47227 * 264.99933 * 17 16 15 19 19 C 1.35312 * 125.86628 * 124.99913 * 18 17 16 20 20 C 1.35352 * 106.17510 * 180.02562 * 19 18 17 21 21 C 1.50702 * 126.75152 * 180.02562 * 20 19 18 22 22 N 1.46892 * 109.47326 * 94.99769 * 21 20 19 23 23 C 1.46902 * 111.00051 * 179.97438 * 22 21 20 24 24 C 1.52998 * 117.50024 * 223.62415 * 23 22 21 25 25 C 1.52999 * 117.50076 * 154.99762 * 23 22 21 26 26 N 1.33769 * 106.49405 * 359.97438 * 20 19 18 27 27 N 1.28637 * 108.88675 * 359.74167 * 26 20 19 28 28 H 0.97002 * 119.99890 * 0.02562 * 1 2 3 29 29 H 1.08001 * 120.02446 * 359.97438 * 11 10 9 30 30 H 1.07997 * 119.97314 * 180.30588 * 12 11 10 31 31 H 1.08007 * 119.96893 * 179.97438 * 15 13 12 32 32 H 1.09005 * 109.47000 * 24.99823 * 17 16 15 33 33 H 1.09000 * 109.47269 * 144.99324 * 17 16 15 34 34 H 1.08004 * 126.91758 * 0.02616 * 19 18 17 35 35 H 1.08998 * 109.46668 * 214.99787 * 21 20 19 36 36 H 1.08997 * 109.46993 * 334.99402 * 21 20 19 37 37 H 1.00902 * 111.00443 * 56.04751 * 22 21 20 38 38 H 1.08998 * 115.54968 * 9.33036 * 23 22 21 39 39 H 1.09007 * 117.49927 * 359.97438 * 24 23 22 40 40 H 1.09000 * 117.49885 * 145.02106 * 24 23 22 41 41 H 1.08997 * 117.50296 * 214.97715 * 25 23 22 42 42 H 1.09001 * 117.49644 * 359.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6178 0.0000 4 1 2.4972 2.0464 -1.4001 5 1 1.4470 2.6528 0.7000 6 1 3.5472 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 1.4689 -2.1360 0.0005 9 8 3.3572 -1.2007 0.0011 10 6 3.9735 -2.4056 -0.1054 11 6 3.2232 -3.5745 -0.0913 12 6 3.8519 -4.7983 -0.2059 13 6 5.2293 -4.8615 -0.3290 14 17 6.0169 -6.4019 -0.4722 15 6 5.9795 -3.6986 -0.3380 16 6 5.3554 -2.4718 -0.2248 17 6 6.1729 -1.2059 -0.2353 18 7 6.4565 -0.7963 1.1424 19 6 7.6833 -0.5637 1.6637 20 6 7.4837 -0.2125 2.9555 21 6 8.5422 0.1473 3.9661 22 7 8.7080 1.6063 4.0033 23 6 9.7340 1.9948 4.9802 24 6 9.4270 3.1847 5.8917 25 6 10.4481 3.3301 4.7615 26 7 6.1619 -0.2464 3.1584 27 7 5.5812 -0.5902 2.0632 28 1 -0.4850 0.8401 -0.0004 29 1 2.1486 -3.5258 0.0048 30 1 3.2687 -5.7072 -0.2000 31 1 7.0541 -3.7505 -0.4338 32 1 7.1106 -1.3833 -0.7620 33 1 5.6155 -0.4176 -0.7414 34 1 8.6312 -0.6424 1.1520 35 1 8.2404 -0.2094 4.9508 36 1 9.4865 -0.3187 3.6846 37 1 7.8309 2.0651 4.1988 38 1 10.3168 1.1754 5.4009 39 1 8.4639 3.6795 5.7662 40 1 9.8079 3.1482 6.9124 41 1 11.5006 3.3894 5.0387 42 1 10.1569 3.9202 3.8925 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881303296.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:53 Heat of formation + Delta-G solvation = 103.363117 kcal Electronic energy + Delta-G solvation = -27304.619839 eV Core-core repulsion = 23313.872285 eV Total energy + Delta-G solvation = -3990.747554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.11854 -41.16965 -38.79960 -38.66704 -37.21563 -36.08498 -34.72182 -34.48505 -32.48144 -31.49357 -30.73978 -28.11908 -27.23288 -26.42097 -23.82026 -23.27402 -23.18502 -22.54265 -22.06608 -21.65151 -19.94137 -19.20128 -18.16325 -17.58417 -16.99941 -16.96538 -16.67255 -16.59252 -16.01582 -15.86171 -15.70997 -15.53563 -14.89390 -14.56969 -14.43363 -14.26047 -14.20742 -14.00993 -13.92876 -13.65139 -13.17960 -13.01697 -12.89080 -12.69674 -12.36072 -12.26930 -12.10408 -12.01049 -11.93719 -11.88576 -11.58087 -11.46092 -11.24471 -10.95333 -10.91038 -10.13037 -10.04620 -9.19582 -9.09905 -8.55949 -6.25479 0.11727 0.37219 0.82004 1.25570 1.26522 1.29623 1.49623 1.56773 1.68247 2.22871 2.61604 2.92459 2.93064 3.00697 3.20131 3.48940 3.59827 3.73867 3.92255 4.01976 4.06677 4.12215 4.16115 4.18404 4.29853 4.32482 4.37562 4.55583 4.65526 4.69343 4.82569 4.83747 4.88973 4.99447 5.09625 5.17237 5.19676 5.27454 5.30932 5.39629 5.63075 5.64556 5.76991 5.99308 6.08311 6.23533 6.79352 7.48254 7.68913 8.55055 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.007733 B = 0.003616 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3619.932846 B = 7741.846650 C =10844.195703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.957 3.043 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.391 4.391 8 H 0.086 0.914 9 O -0.210 6.210 10 C 0.164 3.836 11 C -0.234 4.234 12 C -0.048 4.048 13 C -0.115 4.115 14 Cl -0.069 7.069 15 C -0.030 4.030 16 C -0.183 4.183 17 C 0.168 3.832 18 N -0.281 5.281 19 C -0.019 4.019 20 C -0.046 4.046 21 C 0.160 3.840 22 N -0.664 5.664 23 C 0.017 3.983 24 C -0.210 4.210 25 C -0.168 4.168 26 N -0.317 5.317 27 N -0.111 5.111 28 H 0.285 0.715 29 H 0.121 0.879 30 H 0.143 0.857 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.092 0.908 34 H 0.239 0.761 35 H 0.044 0.956 36 H 0.119 0.881 37 H 0.338 0.662 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.902 -1.951 2.447 24.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.780 3.220 4 H -0.184 1.184 5 H -0.203 1.203 6 H -0.190 1.190 7 C -0.467 4.467 8 H 0.104 0.896 9 O -0.114 6.114 10 C 0.111 3.889 11 C -0.253 4.253 12 C -0.067 4.067 13 C -0.142 4.142 14 Cl -0.041 7.041 15 C -0.049 4.049 16 C -0.186 4.186 17 C 0.049 3.951 18 N -0.074 5.074 19 C -0.171 4.171 20 C -0.185 4.185 21 C 0.030 3.970 22 N -0.293 5.293 23 C -0.093 4.093 24 C -0.249 4.249 25 C -0.206 4.206 26 N -0.183 5.183 27 N -0.090 5.090 28 H 0.094 0.906 29 H 0.139 0.861 30 H 0.161 0.839 31 H 0.187 0.813 32 H 0.188 0.812 33 H 0.110 0.890 34 H 0.255 0.745 35 H 0.062 0.938 36 H 0.137 0.863 37 H 0.156 0.844 38 H 0.145 0.855 39 H 0.102 0.898 40 H 0.125 0.875 41 H 0.130 0.870 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 22.733 -1.732 2.220 22.906 hybrid contribution -0.555 0.305 0.536 0.830 sum 22.177 -1.426 2.756 22.394 Atomic orbital electron populations 1.69708 1.06811 1.29548 1.49493 1.25070 0.95593 1.01565 0.95378 0.85399 0.79195 0.78241 0.79159 1.18415 1.20289 1.18987 1.20682 0.77996 0.96035 1.52020 0.89616 1.83581 1.21107 1.26476 1.80235 1.19435 0.92498 0.85349 0.91584 1.21241 1.00913 0.92297 1.10896 1.20965 0.93166 0.97429 0.95095 1.20506 0.92445 0.87040 1.14198 1.98318 1.80299 1.28538 1.96933 1.20825 1.00834 0.88246 0.94963 1.18852 0.89780 0.95350 1.14608 1.20991 1.03361 0.94401 0.76330 1.47842 1.05300 1.42161 1.12087 1.24111 0.91832 1.06091 0.95090 1.22323 0.92371 1.07678 0.96136 1.20116 0.94958 0.87998 0.93951 1.60316 1.11653 1.07085 1.50292 1.22534 0.98245 0.92732 0.95808 1.23467 1.01001 1.03523 0.96927 1.23151 0.98210 0.99650 0.99578 1.75044 1.07763 1.17619 1.17869 1.78642 1.18684 1.18590 0.93036 0.90569 0.86082 0.83911 0.81261 0.81183 0.88978 0.74517 0.93784 0.86299 0.84380 0.85478 0.89776 0.87454 0.87010 0.89571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.21 13.96 21.61 0.30 -53.90 16 2 C 0.02 1.36 5.49 84.83 0.47 1.82 16 3 Si 0.96 46.04 28.62 68.60 1.96 48.00 16 4 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 6 H -0.27 -13.33 7.11 99.48 0.71 -12.63 16 7 C -0.39 -22.11 9.95 67.92 0.68 -21.43 16 8 H 0.09 5.06 5.44 -2.91 -0.02 5.04 16 9 O -0.21 -10.54 7.72 -22.88 -0.18 -10.72 16 10 C 0.16 6.97 6.62 22.58 0.15 7.11 16 11 C -0.23 -9.60 9.17 22.39 0.21 -9.40 16 12 C -0.05 -1.57 9.82 22.27 0.22 -1.35 16 13 C -0.11 -3.29 6.32 22.35 0.14 -3.14 16 14 Cl -0.07 -1.65 28.95 -2.72 -0.08 -1.73 16 15 C -0.03 -0.78 9.46 22.27 0.21 -0.57 16 16 C -0.18 -5.93 5.27 -19.75 -0.10 -6.03 16 17 C 0.17 4.45 6.31 85.63 0.54 4.99 16 18 N -0.28 -8.72 3.43 -351.46 -1.20 -9.92 16 19 C -0.02 -0.44 11.50 83.49 0.96 0.52 16 20 C -0.05 -1.26 6.76 41.60 0.28 -0.98 16 21 C 0.16 3.16 6.10 85.56 0.52 3.68 16 22 N -0.66 -13.45 6.77 -495.60 -3.35 -16.81 16 23 C 0.02 0.26 6.31 44.91 0.28 0.55 16 24 C -0.21 -3.15 10.23 30.60 0.31 -2.84 16 25 C -0.17 -2.39 10.46 30.60 0.32 -2.07 16 26 N -0.32 -12.29 12.41 -48.60 -0.60 -12.89 16 27 N -0.11 -4.64 12.93 37.02 0.48 -4.16 16 28 H 0.28 15.60 8.31 -92.71 -0.77 14.83 16 29 H 0.12 5.50 5.64 -2.91 -0.02 5.48 16 30 H 0.14 4.05 8.06 -2.91 -0.02 4.03 16 31 H 0.17 2.99 8.06 -2.91 -0.02 2.97 16 32 H 0.17 2.29 7.98 -2.38 -0.02 2.27 16 33 H 0.09 2.79 7.69 -2.39 -0.02 2.77 16 34 H 0.24 2.62 8.06 -2.91 -0.02 2.60 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.34 8.13 8.51 -89.69 -0.76 7.37 16 38 H 0.13 1.52 7.90 -2.39 -0.02 1.50 16 39 H 0.08 1.45 8.09 -2.38 -0.02 1.43 16 40 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -73.31 380.30 2.82 -70.49 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.31 Total: 20.76 kcal Atomic # 6 Polarization: -34.30 SS G_CDS: 5.18 Total: -29.12 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -4.38 Total: -97.69 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: -0.18 Total: -10.72 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 1.96 Total: 48.00 kcal Atomic # 17 Polarization: -1.65 SS G_CDS: -0.08 Total: -1.73 kcal Total: -73.31 2.82 -70.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881303296.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.854 kcal (2) G-P(sol) polarization free energy of solvation -73.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds