Wall clock time and date at job start Wed Apr 1 2020 05:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99749 * 2 1 4 4 H 1.48492 * 109.47483 * 274.83149 * 3 2 1 5 5 H 1.48504 * 109.47061 * 34.83862 * 3 2 1 6 6 H 1.48503 * 109.46502 * 154.82974 * 3 2 1 7 7 C 1.37871 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99868 * 4.95547 * 7 2 1 9 9 C 1.50699 * 120.00239 * 184.95367 * 7 2 1 10 10 H 1.08998 * 109.46992 * 325.05134 * 9 7 2 11 11 N 1.46498 * 109.46971 * 85.05263 * 9 7 2 12 12 C 1.34780 * 120.00188 * 205.00454 * 11 9 7 13 13 O 1.21584 * 119.99526 * 5.02853 * 12 11 9 14 14 N 1.34771 * 120.00181 * 185.03725 * 12 11 9 15 15 C 1.47229 * 121.02974 * 4.42239 * 14 12 11 16 16 C 1.53297 * 108.40211 * 230.56476 * 15 14 12 17 17 O 1.42962 * 109.22666 * 307.69216 * 16 15 14 18 18 C 1.42969 * 114.16100 * 62.58030 * 17 16 15 19 19 C 1.47150 * 120.98311 * 184.47352 * 14 12 11 20 20 H 1.08992 * 109.68530 * 249.16986 * 19 14 12 21 21 C 1.50698 * 109.67973 * 9.68988 * 19 14 12 22 22 C 1.34517 * 125.78873 * 231.78414 * 21 19 14 23 23 C 1.41387 * 106.83936 * 180.02562 * 22 21 19 24 24 C 1.34511 * 106.84218 * 0.02562 * 23 22 21 25 25 O 1.34301 * 108.42140 * 359.74092 * 24 23 22 26 26 C 1.53002 * 109.47536 * 205.05240 * 9 7 2 27 27 F 1.39901 * 109.46824 * 304.72830 * 26 9 7 28 28 F 1.39903 * 109.46892 * 64.72023 * 26 9 7 29 29 F 1.39892 * 109.47292 * 184.72700 * 26 9 7 30 30 H 0.96997 * 119.99803 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99960 * 24.99805 * 11 9 7 32 32 H 1.09001 * 109.67422 * 110.83969 * 15 14 12 33 33 H 1.08993 * 109.70167 * 350.31160 * 15 14 12 34 34 H 1.09005 * 109.50763 * 187.77369 * 16 15 14 35 35 H 1.08991 * 109.51583 * 67.62426 * 16 15 14 36 36 H 1.09002 * 109.50794 * 177.49730 * 18 17 16 37 37 H 1.09004 * 109.51115 * 57.34861 * 18 17 16 38 38 H 1.07999 * 126.57770 * 0.04075 * 22 21 19 39 39 H 1.08001 * 126.57442 * 180.02562 * 23 22 21 40 40 H 1.07997 * 125.79160 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3945 2.1055 -1.3950 5 1 1.5014 2.6210 0.7998 6 1 3.5940 1.4128 0.5955 7 6 2.0046 -1.1940 -0.0005 8 1 1.4676 -2.1275 -0.0817 9 6 3.5074 -1.1965 0.1122 10 1 3.9123 -0.3299 -0.4104 11 7 3.8912 -1.1383 1.5248 12 6 5.0910 -0.6353 1.8770 13 8 5.8167 -0.1464 1.0328 14 7 5.4864 -0.6745 3.1648 15 6 4.6701 -1.3467 4.1892 16 6 4.4809 -0.3830 5.3663 17 8 5.7582 0.1001 5.7892 18 6 6.4566 0.8548 4.7958 19 6 6.7470 -0.0455 3.5896 20 1 7.4651 -0.8157 3.8709 21 6 7.3065 0.7823 2.4615 22 6 8.5589 0.7067 1.9763 23 6 8.6515 1.6554 0.9320 24 6 7.4504 2.2543 0.8419 25 8 6.6382 1.7177 1.7671 26 6 4.0638 -2.4762 -0.5152 27 9 3.4626 -3.5886 0.0834 28 9 3.7901 -2.4801 -1.8872 29 9 5.4474 -2.5301 -0.3155 30 1 -0.4850 0.8400 0.0004 31 1 3.2818 -1.4617 2.2067 32 1 5.1791 -2.2480 4.5309 33 1 3.6988 -1.6100 3.7706 34 1 3.9983 -0.9067 6.1915 35 1 3.8595 0.4561 5.0536 36 1 7.3954 1.2217 5.2107 37 1 5.8424 1.6985 4.4810 38 1 9.3430 0.0477 2.3186 39 1 9.5200 1.8599 0.3235 40 1 7.1831 3.0312 0.1411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932907939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:04 Heat of formation + Delta-G solvation = -182.704170 kcal Electronic energy + Delta-G solvation = -33711.799270 eV Core-core repulsion = 28693.788252 eV Total energy + Delta-G solvation = -5018.011019 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.113 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.08466 -46.59642 -46.57848 -42.18998 -40.13966 -38.33817 -35.15445 -34.52648 -33.06277 -32.48847 -31.95499 -29.38821 -28.44357 -27.09320 -25.00162 -24.25088 -22.51130 -21.51739 -21.13368 -20.43078 -19.47093 -18.59757 -17.67115 -17.55380 -16.90992 -16.86891 -16.50533 -16.34198 -15.80131 -15.65341 -15.38401 -15.13931 -14.76780 -14.55248 -13.95982 -13.75910 -13.51244 -13.45476 -13.19847 -13.04773 -12.94258 -12.77930 -12.69689 -12.58429 -12.44881 -12.38843 -12.14667 -11.90760 -11.82491 -11.46607 -11.17347 -10.94559 -10.69798 -10.28434 -10.11351 -9.85697 -9.75458 -9.44617 -9.01886 -8.57630 -8.28453 -7.79782 -6.56789 -4.72054 2.10959 2.74781 3.05778 3.12071 3.20015 3.35865 3.40774 3.56324 3.68115 3.94215 4.10356 4.17377 4.52004 4.79493 4.84696 4.89043 4.93526 5.05425 5.13343 5.17552 5.19447 5.33525 5.40378 5.43776 5.45927 5.57064 5.64360 5.76791 6.12025 6.20504 6.25717 6.40217 6.53273 6.84742 6.87357 6.92378 7.14753 7.26030 7.63139 7.85898 8.48817 8.50283 8.99265 9.09601 10.50819 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.005452 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.817812 B = 5134.600728 C = 5394.208126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.101 3.899 3 Si 0.862 3.138 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.240 1.240 7 C -0.537 4.537 8 H 0.094 0.906 9 C 0.222 3.778 10 H 0.091 0.909 11 N -0.727 5.727 12 C 0.698 3.302 13 O -0.557 6.557 14 N -0.641 5.641 15 C 0.078 3.922 16 C 0.044 3.956 17 O -0.376 6.376 18 C 0.054 3.946 19 C 0.212 3.788 20 H 0.103 0.897 21 C 0.029 3.971 22 C -0.215 4.215 23 C -0.218 4.218 24 C -0.028 4.028 25 O -0.148 6.148 26 C 0.439 3.561 27 F -0.191 7.191 28 F -0.185 7.185 29 F -0.195 7.195 30 H 0.275 0.725 31 H 0.393 0.607 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.162 1.460 9.443 14.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C -0.109 4.109 3 Si 0.687 3.313 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.162 1.162 7 C -0.575 4.575 8 H 0.112 0.888 9 C 0.118 3.882 10 H 0.108 0.892 11 N -0.384 5.384 12 C 0.400 3.600 13 O -0.433 6.433 14 N -0.382 5.382 15 C -0.046 4.046 16 C -0.033 4.033 17 O -0.294 6.294 18 C -0.024 4.024 19 C 0.107 3.893 20 H 0.121 0.879 21 C -0.023 4.023 22 C -0.235 4.235 23 C -0.237 4.237 24 C -0.097 4.097 25 O -0.043 6.043 26 C 0.383 3.617 27 F -0.173 7.173 28 F -0.167 7.167 29 F -0.177 7.177 30 H 0.085 0.915 31 H 0.231 0.769 32 H 0.096 0.904 33 H 0.114 0.886 34 H 0.127 0.873 35 H 0.078 0.922 36 H 0.127 0.873 37 H 0.080 0.920 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 11.266 1.912 8.999 14.545 hybrid contribution 0.140 0.336 -0.343 0.500 sum 11.406 2.248 8.656 14.494 Atomic orbital electron populations 1.69875 1.06482 1.28362 1.44419 1.24968 0.94753 0.99361 0.91849 0.86977 0.82099 0.82702 0.79565 1.19542 1.20798 1.16249 1.20796 0.86460 0.96412 1.53794 0.88814 1.19945 0.97628 0.90173 0.80454 0.89184 1.47023 1.15549 1.66055 1.09776 1.16296 0.82844 0.79284 0.81568 1.90881 1.54009 1.50388 1.48057 1.47596 1.22933 1.60503 1.07205 1.22349 0.96886 0.96028 0.89298 1.23053 0.85435 0.97435 0.97392 1.87957 1.31633 1.71669 1.38164 1.23064 0.98183 0.93110 0.88061 1.20112 0.86093 0.93086 0.89994 0.87907 1.21304 0.90591 0.94285 0.96091 1.21191 0.97096 1.04246 1.00986 1.21519 0.98930 1.00974 1.02323 1.23702 0.89541 1.01434 0.95055 1.84088 1.39083 1.42768 1.38333 1.21668 0.74840 0.88426 0.76770 1.93072 1.83577 1.56971 1.83641 1.93099 1.93619 1.96903 1.33081 1.93137 1.32728 1.96995 1.94828 0.91511 0.76907 0.90408 0.88599 0.87335 0.92203 0.87266 0.92022 0.84501 0.84431 0.79382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.33 13.96 55.43 0.77 -22.56 16 2 C 0.10 2.61 5.47 -17.82 -0.10 2.51 16 3 Si 0.86 20.00 27.19 -169.99 -4.62 15.38 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.24 -5.70 6.24 56.52 0.35 -5.35 16 7 C -0.54 -13.57 8.68 -34.44 -0.30 -13.86 16 8 H 0.09 2.57 7.67 -52.48 -0.40 2.17 16 9 C 0.22 5.08 1.40 -69.08 -0.10 4.99 16 10 H 0.09 2.22 5.09 -51.93 -0.26 1.96 16 11 N -0.73 -14.70 4.77 -59.82 -0.29 -14.98 16 12 C 0.70 13.86 7.13 -86.92 -0.62 13.24 16 13 O -0.56 -12.53 10.49 -19.65 -0.21 -12.74 16 14 N -0.64 -10.14 3.02 -171.70 -0.52 -10.66 16 15 C 0.08 0.94 6.65 -3.49 -0.02 0.92 16 16 C 0.04 0.47 6.98 37.31 0.26 0.73 16 17 O -0.38 -4.47 10.74 -35.23 -0.38 -4.84 16 18 C 0.05 0.64 6.27 37.31 0.23 0.87 16 19 C 0.21 2.98 3.55 -68.58 -0.24 2.74 16 20 H 0.10 1.28 8.11 -51.93 -0.42 0.86 16 21 C 0.03 0.47 3.87 -35.62 -0.14 0.33 16 22 C -0.22 -3.29 10.79 -39.70 -0.43 -3.72 16 23 C -0.22 -3.28 10.91 -39.70 -0.43 -3.72 16 24 C -0.03 -0.46 11.84 29.41 0.35 -0.11 16 25 O -0.15 -2.75 8.27 -19.25 -0.16 -2.91 16 26 C 0.44 9.81 2.83 37.16 0.11 9.92 16 27 F -0.19 -4.14 16.63 2.25 0.04 -4.10 16 28 F -0.19 -4.21 17.14 2.25 0.04 -4.17 16 29 F -0.20 -4.37 15.75 2.25 0.04 -4.34 16 30 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 31 H 0.39 7.18 6.13 -40.82 -0.25 6.93 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.10 1.14 5.66 -51.93 -0.29 0.84 16 34 H 0.11 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.06 0.81 8.13 -51.93 -0.42 0.38 16 38 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 39 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 40 H 0.19 2.45 8.06 -52.49 -0.42 2.03 16 LS Contribution 340.61 15.07 5.13 5.13 Total: -1.00 -31.35 340.61 -5.78 -37.13 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -4.20 Total: 8.83 kcal Atomic # 6 Polarization: 16.27 SS G_CDS: -1.43 Total: 14.84 kcal Atomic # 7 Polarization: -48.17 SS G_CDS: -0.03 Total: -48.20 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.74 Total: -20.49 kcal Atomic # 9 Polarization: -12.72 SS G_CDS: 0.11 Total: -12.61 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.62 Total: 15.38 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.35 -5.78 -37.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932907939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.577 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -182.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds