Wall clock time and date at job start Wed Apr 1 2020 05:26:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86803 * 119.99749 * 2 1 4 4 H 1.48492 * 109.47483 * 274.83149 * 3 2 1 5 5 H 1.48504 * 109.47061 * 34.83862 * 3 2 1 6 6 H 1.48503 * 109.46502 * 154.82974 * 3 2 1 7 7 C 1.37871 * 120.00211 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99868 * 4.95547 * 7 2 1 9 9 C 1.50699 * 120.00239 * 184.95367 * 7 2 1 10 10 H 1.08998 * 109.46992 * 325.05134 * 9 7 2 11 11 N 1.46498 * 109.46971 * 85.05263 * 9 7 2 12 12 C 1.34780 * 120.00188 * 205.00454 * 11 9 7 13 13 O 1.21584 * 119.99526 * 5.02853 * 12 11 9 14 14 N 1.34771 * 120.00181 * 185.03725 * 12 11 9 15 15 C 1.47229 * 121.02974 * 4.42239 * 14 12 11 16 16 C 1.53297 * 108.40211 * 230.56476 * 15 14 12 17 17 O 1.42962 * 109.22666 * 307.69216 * 16 15 14 18 18 C 1.42969 * 114.16100 * 62.58030 * 17 16 15 19 19 C 1.47150 * 120.98311 * 184.47352 * 14 12 11 20 20 H 1.08992 * 109.68530 * 249.16986 * 19 14 12 21 21 C 1.50698 * 109.67973 * 9.68988 * 19 14 12 22 22 C 1.34517 * 125.78873 * 231.78414 * 21 19 14 23 23 C 1.41387 * 106.83936 * 180.02562 * 22 21 19 24 24 C 1.34511 * 106.84218 * 0.02562 * 23 22 21 25 25 O 1.34301 * 108.42140 * 359.74092 * 24 23 22 26 26 C 1.53002 * 109.47536 * 205.05240 * 9 7 2 27 27 F 1.39901 * 109.46824 * 304.72830 * 26 9 7 28 28 F 1.39903 * 109.46892 * 64.72023 * 26 9 7 29 29 F 1.39892 * 109.47292 * 184.72700 * 26 9 7 30 30 H 0.96997 * 119.99803 * 359.97438 * 1 2 3 31 31 H 0.97003 * 119.99960 * 24.99805 * 11 9 7 32 32 H 1.09001 * 109.67422 * 110.83969 * 15 14 12 33 33 H 1.08993 * 109.70167 * 350.31160 * 15 14 12 34 34 H 1.09005 * 109.50763 * 187.77369 * 16 15 14 35 35 H 1.08991 * 109.51583 * 67.62426 * 16 15 14 36 36 H 1.09002 * 109.50794 * 177.49730 * 18 17 16 37 37 H 1.09004 * 109.51115 * 57.34861 * 18 17 16 38 38 H 1.07999 * 126.57770 * 0.04075 * 22 21 19 39 39 H 1.08001 * 126.57442 * 180.02562 * 23 22 21 40 40 H 1.07997 * 125.79160 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3945 2.1055 -1.3950 5 1 1.5014 2.6210 0.7998 6 1 3.5940 1.4128 0.5955 7 6 2.0046 -1.1940 -0.0005 8 1 1.4676 -2.1275 -0.0817 9 6 3.5074 -1.1965 0.1122 10 1 3.9123 -0.3299 -0.4104 11 7 3.8912 -1.1383 1.5248 12 6 5.0910 -0.6353 1.8770 13 8 5.8167 -0.1464 1.0328 14 7 5.4864 -0.6745 3.1648 15 6 4.6701 -1.3467 4.1892 16 6 4.4809 -0.3830 5.3663 17 8 5.7582 0.1001 5.7892 18 6 6.4566 0.8548 4.7958 19 6 6.7470 -0.0455 3.5896 20 1 7.4651 -0.8157 3.8709 21 6 7.3065 0.7823 2.4615 22 6 8.5589 0.7067 1.9763 23 6 8.6515 1.6554 0.9320 24 6 7.4504 2.2543 0.8419 25 8 6.6382 1.7177 1.7671 26 6 4.0638 -2.4762 -0.5152 27 9 3.4626 -3.5886 0.0834 28 9 3.7901 -2.4801 -1.8872 29 9 5.4474 -2.5301 -0.3155 30 1 -0.4850 0.8400 0.0004 31 1 3.2818 -1.4617 2.2067 32 1 5.1791 -2.2480 4.5309 33 1 3.6988 -1.6100 3.7706 34 1 3.9983 -0.9067 6.1915 35 1 3.8595 0.4561 5.0536 36 1 7.3954 1.2217 5.2107 37 1 5.8424 1.6985 4.4810 38 1 9.3430 0.0477 2.3186 39 1 9.5200 1.8599 0.3235 40 1 7.1831 3.0312 0.1411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932907939.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:26:03 Heat of formation + Delta-G solvation = -202.968731 kcal Electronic energy + Delta-G solvation = -33712.678008 eV Core-core repulsion = 28693.788252 eV Total energy + Delta-G solvation = -5018.889756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.113 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.90211 -48.41551 -48.38824 -43.38559 -41.41659 -39.56117 -36.77027 -35.84103 -34.66264 -33.86739 -33.19035 -30.91979 -29.70036 -28.22622 -26.92951 -25.27978 -23.82979 -22.95439 -22.42195 -21.72862 -20.94423 -20.11457 -19.36566 -19.22462 -18.59373 -18.41098 -18.05227 -17.49545 -17.14946 -16.86225 -16.61846 -16.26153 -16.08414 -15.88596 -15.55023 -15.31826 -15.15952 -14.99845 -14.85297 -14.76163 -14.60129 -14.53987 -14.45113 -14.20898 -13.68934 -13.52842 -13.46318 -13.17475 -13.04872 -12.98184 -12.55878 -12.41810 -11.97266 -11.96136 -11.84195 -11.32206 -11.22590 -11.01089 -10.64508 -10.12376 -9.59872 -9.00573 -8.57665 -6.75607 0.90443 1.21539 1.30643 1.45485 1.50697 1.88053 1.91301 2.16117 2.27042 2.34709 2.61744 2.77274 3.02395 3.28713 3.34753 3.52571 3.58266 3.76535 3.88505 3.99964 4.15804 4.19804 4.31576 4.34857 4.42074 4.52075 4.62312 4.79385 4.85253 4.93162 4.99954 5.08903 5.25843 5.39080 5.51069 5.74014 5.80531 5.94181 5.98186 6.42016 6.45247 6.97433 6.99376 7.58211 8.54006 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.010346 B = 0.005452 C = 0.005190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.817812 B = 5134.600728 C = 5394.208126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.069 3.931 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.250 1.250 7 C -0.537 4.537 8 H 0.068 0.932 9 C 0.234 3.766 10 H 0.075 0.925 11 N -0.726 5.726 12 C 0.694 3.306 13 O -0.585 6.585 14 N -0.639 5.639 15 C 0.072 3.928 16 C 0.047 3.953 17 O -0.377 6.377 18 C 0.062 3.938 19 C 0.207 3.793 20 H 0.124 0.876 21 C 0.011 3.989 22 C -0.222 4.222 23 C -0.221 4.221 24 C -0.052 4.052 25 O -0.177 6.177 26 C 0.441 3.559 27 F -0.186 7.186 28 F -0.188 7.188 29 F -0.193 7.193 30 H 0.279 0.721 31 H 0.403 0.597 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.142 0.858 35 H 0.049 0.951 36 H 0.136 0.864 37 H 0.045 0.955 38 H 0.159 0.841 39 H 0.161 0.839 40 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.668 1.467 11.039 16.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.743 3.257 4 H -0.197 1.197 5 H -0.202 1.202 6 H -0.173 1.173 7 C -0.574 4.574 8 H 0.086 0.914 9 C 0.128 3.872 10 H 0.093 0.907 11 N -0.384 5.384 12 C 0.396 3.604 13 O -0.464 6.464 14 N -0.380 5.380 15 C -0.050 4.050 16 C -0.030 4.030 17 O -0.295 6.295 18 C -0.015 4.015 19 C 0.103 3.897 20 H 0.141 0.859 21 C -0.040 4.040 22 C -0.242 4.242 23 C -0.240 4.240 24 C -0.120 4.120 25 O -0.073 6.073 26 C 0.385 3.615 27 F -0.168 7.168 28 F -0.170 7.170 29 F -0.175 7.175 30 H 0.089 0.911 31 H 0.242 0.758 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.159 0.841 35 H 0.067 0.933 36 H 0.153 0.847 37 H 0.064 0.936 38 H 0.177 0.823 39 H 0.178 0.822 40 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 12.780 1.910 10.650 16.745 hybrid contribution -0.248 0.265 -0.807 0.885 sum 12.533 2.175 9.842 16.083 Atomic orbital electron populations 1.69933 1.07566 1.29250 1.46256 1.25446 0.95133 1.01560 0.91692 0.86115 0.80392 0.79987 0.79221 1.19674 1.20218 1.17321 1.20715 0.87511 0.95340 1.53882 0.91432 1.19557 0.96016 0.89921 0.81678 0.90721 1.46463 1.16472 1.66703 1.08774 1.16313 0.82262 0.79006 0.82850 1.90867 1.54626 1.51327 1.49543 1.47613 1.23830 1.60116 1.06391 1.22643 0.96624 0.96980 0.88782 1.23169 0.85038 0.96962 0.97880 1.87970 1.31973 1.71517 1.37991 1.23041 0.99099 0.92042 0.87367 1.20470 0.85552 0.93623 0.90024 0.85885 1.21783 0.91094 0.94380 0.96713 1.21579 0.97421 1.04401 1.00780 1.21887 0.99341 1.00434 1.02297 1.24258 0.89972 1.02353 0.95458 1.84047 1.40408 1.43585 1.39229 1.21561 0.74901 0.88399 0.76603 1.93079 1.83517 1.56654 1.83538 1.93091 1.93651 1.96922 1.33346 1.93139 1.32530 1.96987 1.94809 0.91082 0.75793 0.88227 0.88693 0.84055 0.93298 0.84671 0.93645 0.82327 0.82159 0.77578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.07 13.96 21.45 0.30 -48.77 16 2 C 0.07 3.56 5.47 84.65 0.46 4.02 16 3 Si 0.92 41.87 27.19 68.60 1.87 43.73 16 4 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.25 -11.76 6.24 99.48 0.62 -11.14 16 7 C -0.54 -27.37 8.68 25.60 0.22 -27.15 16 8 H 0.07 3.77 7.67 -2.91 -0.02 3.75 16 9 C 0.23 10.71 1.40 44.25 0.06 10.77 16 10 H 0.08 3.70 5.09 -2.39 -0.01 3.68 16 11 N -0.73 -28.93 4.77 -461.42 -2.20 -31.13 16 12 C 0.69 26.91 7.13 179.06 1.28 28.19 16 13 O -0.59 -26.01 10.49 19.87 0.21 -25.80 16 14 N -0.64 -19.10 3.02 -815.39 -2.46 -21.57 16 15 C 0.07 1.56 6.65 86.34 0.57 2.13 16 16 C 0.05 0.87 6.98 72.08 0.50 1.37 16 17 O -0.38 -7.80 10.74 -148.98 -1.60 -9.40 16 18 C 0.06 1.34 6.27 72.08 0.45 1.79 16 19 C 0.21 5.38 3.55 44.22 0.16 5.54 16 20 H 0.12 2.69 8.11 -2.39 -0.02 2.67 16 21 C 0.01 0.35 3.87 24.83 0.10 0.45 16 22 C -0.22 -6.40 10.79 22.19 0.24 -6.16 16 23 C -0.22 -6.31 10.91 22.19 0.24 -6.07 16 24 C -0.05 -1.65 11.84 66.97 0.79 -0.86 16 25 O -0.18 -6.49 8.27 21.33 0.18 -6.31 16 26 C 0.44 19.58 2.83 71.98 0.20 19.78 16 27 F -0.19 -7.98 16.63 44.97 0.75 -7.23 16 28 F -0.19 -8.53 17.14 44.97 0.77 -7.76 16 29 F -0.19 -8.49 15.75 44.97 0.71 -7.78 16 30 H 0.28 14.28 8.31 -92.71 -0.77 13.51 16 31 H 0.40 14.43 6.13 -92.71 -0.57 13.86 16 32 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.09 2.07 5.66 -2.39 -0.01 2.06 16 34 H 0.14 1.71 8.14 -2.38 -0.02 1.69 16 35 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.14 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.05 1.13 8.13 -2.39 -0.02 1.11 16 38 H 0.16 3.69 8.06 -2.91 -0.02 3.66 16 39 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 40 H 0.21 5.26 8.06 -2.91 -0.02 5.24 16 Total: -1.00 -66.98 340.61 4.25 -62.73 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.46 Total: 25.48 kcal Atomic # 6 Polarization: 28.53 SS G_CDS: 5.28 Total: 33.81 kcal Atomic # 7 Polarization: -97.10 SS G_CDS: -4.37 Total: -101.47 kcal Atomic # 8 Polarization: -40.30 SS G_CDS: -1.22 Total: -41.51 kcal Atomic # 9 Polarization: -24.99 SS G_CDS: 2.23 Total: -22.77 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 1.87 Total: 43.73 kcal Total: -66.98 4.25 -62.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932907939.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.240 kcal (2) G-P(sol) polarization free energy of solvation -66.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -207.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds