Wall clock time and date at job start Wed Apr 1 2020 05:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99842 * 2 1 4 4 H 1.48499 * 109.47059 * 274.98800 * 3 2 1 5 5 H 1.48501 * 109.47162 * 34.98670 * 3 2 1 6 6 H 1.48497 * 109.47246 * 154.98666 * 3 2 1 7 7 C 1.38809 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99843 * 186.83279 * 7 2 1 9 9 N 1.36932 * 120.00429 * 6.82358 * 7 2 1 10 10 C 1.47030 * 125.64558 * 353.95045 * 9 7 2 11 11 C 1.54323 * 107.27045 * 181.02171 * 10 9 7 12 12 H 1.09003 * 110.87241 * 263.75442 * 11 10 9 13 13 O 1.42894 * 110.72058 * 140.55407 * 11 10 9 14 14 C 1.55159 * 102.94390 * 22.19107 * 11 10 9 15 15 H 1.09000 * 111.00279 * 82.57240 * 14 11 10 16 16 C 1.53001 * 111.00484 * 206.42735 * 14 11 10 17 17 N 1.46496 * 109.47214 * 184.99782 * 16 14 11 18 18 C 1.34779 * 120.00280 * 179.97438 * 17 16 14 19 19 O 1.21545 * 119.99593 * 0.02562 * 18 17 16 20 20 C 1.47854 * 120.00119 * 180.02562 * 18 17 16 21 21 N 1.28998 * 124.85504 * 0.02562 * 20 18 17 22 22 C 1.33158 * 118.21225 * 179.97438 * 21 20 18 23 23 C 1.41369 * 129.83057 * 180.02562 * 22 21 20 24 24 N 1.31017 * 120.66530 * 179.97438 * 23 22 21 25 25 C 1.32360 * 122.68190 * 359.97438 * 24 23 22 26 26 C 1.36524 * 121.01696 * 0.04124 * 25 24 23 27 27 C 1.39653 * 119.14214 * 359.97164 * 26 25 24 28 28 S 1.75906 * 132.43423 * 180.37712 * 27 26 25 29 29 C 1.47423 * 125.65349 * 173.90167 * 9 7 2 30 30 H 0.97000 * 120.00036 * 359.97438 * 1 2 3 31 31 H 1.08992 * 109.88201 * 61.60074 * 10 9 7 32 32 H 1.09001 * 109.88036 * 300.43794 * 10 9 7 33 33 H 0.96700 * 114.00077 * 66.47774 * 13 11 10 34 34 H 1.09003 * 109.46952 * 304.99570 * 16 14 11 35 35 H 1.08999 * 109.47161 * 64.99514 * 16 14 11 36 36 H 0.96999 * 120.00023 * 0.02562 * 17 16 14 37 37 H 1.07996 * 119.66501 * 359.97438 * 23 22 21 38 38 H 1.08000 * 119.48890 * 180.02562 * 25 24 23 39 39 H 1.08001 * 120.43319 * 179.97438 * 26 25 24 40 40 H 1.08999 * 110.36197 * 37.07202 * 29 9 7 41 41 H 1.08999 * 110.37017 * 274.75102 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4122 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0846 -1.2054 0.1107 9 7 1.3329 -2.3838 -0.1420 10 6 -0.1292 -2.5346 -0.1757 11 6 -0.4311 -4.0408 -0.3231 12 1 -0.6024 -4.3022 -1.3674 13 8 -1.5533 -4.4124 0.4796 14 6 0.8663 -4.7086 0.2043 15 1 0.8586 -4.7718 1.2924 16 6 1.0655 -6.0903 -0.4218 17 7 2.2304 -6.7384 0.1857 18 6 2.5991 -7.9722 -0.2122 19 8 1.9652 -8.5470 -1.0755 20 6 3.7745 -8.6265 0.4013 21 7 4.5118 -8.1044 1.3221 22 6 5.5410 -8.8133 1.7818 23 6 6.4946 -8.4869 2.7731 24 7 7.4452 -9.3311 3.0895 25 6 7.5691 -10.5166 2.5140 26 6 6.6971 -10.9228 1.5453 27 6 5.6607 -10.0690 1.1616 28 16 4.3626 -10.2316 -0.0143 29 6 1.9490 -3.7153 -0.2866 30 1 -0.4850 0.8400 0.0004 31 1 -0.5385 -1.9895 -1.0262 32 1 -0.5621 -2.1587 0.7513 33 1 -2.3896 -4.0213 0.1918 34 1 0.1786 -6.6996 -0.2472 35 1 1.2274 -5.9833 -1.4944 36 1 2.7361 -6.2798 0.8748 37 1 6.4390 -7.5320 3.2744 38 1 8.3725 -11.1724 2.8152 39 1 6.8072 -11.8920 1.0816 40 1 2.8416 -3.7897 0.3346 41 1 2.1952 -3.9081 -1.3307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958243574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:44 Heat of formation + Delta-G solvation = 19.759714 kcal Electronic energy + Delta-G solvation = -26875.601196 eV Core-core repulsion = 22883.272032 eV Total energy + Delta-G solvation = -3992.329164 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.34505 -39.97660 -38.37336 -37.91966 -35.27673 -34.77300 -32.68227 -32.32772 -31.12579 -29.71173 -27.71692 -26.70003 -25.46657 -24.66999 -23.48902 -22.81484 -20.89120 -20.30726 -19.98061 -19.13955 -18.09635 -17.56068 -16.97080 -16.82462 -16.31366 -16.04970 -15.83194 -15.28572 -15.10898 -14.90675 -14.69487 -14.32846 -14.04887 -13.71794 -13.48630 -13.14214 -12.98359 -12.69111 -12.49192 -12.08389 -12.06963 -11.56297 -11.26188 -11.11984 -11.06158 -10.90761 -10.84106 -10.64025 -10.28070 -10.14136 -10.07101 -9.89350 -9.82505 -9.59076 -9.27294 -9.16999 -8.85550 -8.66306 -6.92661 -5.79637 -3.13134 -0.54024 0.45348 0.50223 1.06376 1.42421 2.72185 2.74728 3.24861 3.36858 3.40038 3.42294 3.44176 3.84899 3.97268 4.29813 4.39908 4.42983 4.68218 4.76791 4.94079 5.09424 5.11534 5.20155 5.31130 5.37656 5.45128 5.61727 5.78031 5.84568 5.89569 5.98409 6.13035 6.19511 6.32739 6.49096 6.75667 6.77699 7.24939 7.36407 7.37200 7.46044 7.71980 7.82864 8.14725 8.16494 9.12864 9.73575 10.37905 11.32453 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.013458 B = 0.002372 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.027352 B =11802.263328 C =13402.786413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.006 4.006 3 Si 0.912 3.088 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.280 1.280 7 C -0.231 4.231 8 H 0.080 0.920 9 N -0.602 5.602 10 C 0.151 3.849 11 C 0.084 3.916 12 H 0.058 0.942 13 O -0.567 6.567 14 C -0.109 4.109 15 H 0.092 0.908 16 C 0.131 3.869 17 N -0.690 5.690 18 C 0.591 3.409 19 O -0.521 6.521 20 C 0.065 3.935 21 N -0.415 5.415 22 C 0.025 3.975 23 C 0.198 3.802 24 N -0.475 5.475 25 C 0.106 3.894 26 C -0.124 4.124 27 C -0.156 4.156 28 S 0.181 5.819 29 C 0.141 3.859 30 H 0.253 0.747 31 H 0.049 0.951 32 H 0.055 0.945 33 H 0.377 0.623 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.414 0.586 37 H 0.177 0.823 38 H 0.169 0.831 39 H 0.145 0.855 40 H 0.044 0.956 41 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.420 -22.613 2.209 24.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.203 4.203 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.205 1.205 7 C -0.359 4.359 8 H 0.098 0.902 9 N -0.329 5.329 10 C 0.026 3.974 11 C 0.024 3.976 12 H 0.076 0.924 13 O -0.372 6.372 14 C -0.129 4.129 15 H 0.110 0.890 16 C 0.008 3.992 17 N -0.341 5.341 18 C 0.371 3.629 19 O -0.397 6.397 20 C -0.220 4.220 21 N -0.132 5.132 22 C -0.102 4.102 23 C 0.026 3.974 24 N -0.184 5.184 25 C -0.044 4.044 26 C -0.149 4.149 27 C -0.282 4.282 28 S 0.437 5.563 29 C 0.014 3.986 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.224 0.776 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.251 0.749 37 H 0.194 0.806 38 H 0.186 0.814 39 H 0.163 0.837 40 H 0.062 0.938 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 9.446 -23.206 1.956 25.132 hybrid contribution 0.251 1.484 -0.025 1.505 sum 9.698 -21.722 1.931 23.867 Atomic orbital electron populations 1.69950 1.04978 1.25208 1.56644 1.24834 0.95738 0.97798 1.01923 0.86091 0.78711 0.83400 0.77525 1.21565 1.21723 1.20541 1.19071 0.91139 0.82342 1.43364 0.90216 1.44302 1.01258 1.01174 1.86182 1.21836 0.85324 0.88442 1.01795 1.23118 0.84856 0.97182 0.92489 0.92406 1.86417 1.18534 1.74116 1.58107 1.22632 0.96379 0.92327 1.01530 0.88978 1.21580 0.86916 0.92920 0.97786 1.45843 1.31263 1.15680 1.41319 1.16823 0.81758 0.82063 0.82261 1.90867 1.53436 1.64282 1.31100 1.27455 1.00342 0.96188 0.98000 1.65818 1.03831 1.34135 1.09416 1.20133 0.97182 0.90989 1.01888 1.22941 0.85947 0.98553 0.89936 1.67543 1.20726 1.03792 1.26379 1.22486 0.97461 0.92697 0.91742 1.21101 0.93956 1.00271 0.99542 1.24600 1.02031 0.99597 1.01994 1.85239 1.19792 1.15485 1.35749 1.21635 0.93998 0.85458 0.97492 0.93659 0.93278 0.92720 0.77633 0.90436 0.90584 0.74932 0.80558 0.81358 0.83698 0.93775 0.95803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.45 10.36 55.49 0.58 -25.88 16 2 C -0.01 -0.18 5.48 -17.43 -0.10 -0.27 16 3 Si 0.91 21.76 29.56 -169.99 -5.02 16.73 16 4 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -6.29 10.26 -15.06 -0.15 -6.45 16 8 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 9 N -0.60 -14.85 3.39 -170.07 -0.58 -15.42 16 10 C 0.15 3.52 5.15 -3.06 -0.02 3.50 16 11 C 0.08 1.50 3.80 -24.90 -0.09 1.40 16 12 H 0.06 0.95 8.04 -51.93 -0.42 0.54 16 13 O -0.57 -9.46 13.39 -35.23 -0.47 -9.93 16 14 C -0.11 -1.81 2.77 -88.47 -0.25 -2.05 16 15 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 16 C 0.13 1.86 5.13 -4.04 -0.02 1.84 16 17 N -0.69 -9.06 5.50 -61.25 -0.34 -9.40 16 18 C 0.59 8.09 7.83 -12.32 -0.10 7.99 16 19 O -0.52 -8.30 16.91 5.33 0.09 -8.21 16 20 C 0.07 0.79 7.41 -14.81 -0.11 0.68 16 21 N -0.41 -4.92 10.08 -8.53 -0.09 -5.00 16 22 C 0.02 0.26 6.99 -85.23 -0.60 -0.33 16 23 C 0.20 1.83 11.30 -16.71 -0.19 1.64 16 24 N -0.48 -4.27 10.28 -12.93 -0.13 -4.40 16 25 C 0.11 0.72 11.12 -17.94 -0.20 0.52 16 26 C -0.12 -0.85 10.09 -39.67 -0.40 -1.25 16 27 C -0.16 -1.47 6.62 -38.18 -0.25 -1.73 16 28 S 0.18 1.79 23.17 -107.50 -2.49 -0.70 16 29 C 0.14 2.73 6.65 -2.53 -0.02 2.71 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.05 1.25 7.37 -51.93 -0.38 0.87 16 32 H 0.05 1.44 7.46 -51.93 -0.39 1.05 16 33 H 0.38 4.84 9.12 45.56 0.42 5.26 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.08 7.96 -51.93 -0.41 0.67 16 36 H 0.41 5.09 8.10 -40.82 -0.33 4.76 16 37 H 0.18 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.17 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.15 0.58 8.06 -52.49 -0.42 0.16 16 40 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.02 0.46 7.91 -51.93 -0.41 0.05 16 LS Contribution 365.27 15.07 5.50 5.50 Total: -1.00 -33.22 365.27 -9.45 -42.66 By element: Atomic # 1 Polarization: 9.87 SS G_CDS: -4.01 Total: 5.86 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -2.49 Total: 8.19 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.56 Total: -60.11 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -0.38 Total: -18.14 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.49 Total: -0.70 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.22 -9.45 -42.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958243574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.424 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds