Wall clock time and date at job start Wed Apr 1 2020 05:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86803 * 119.99842 * 2 1 4 4 H 1.48499 * 109.47059 * 274.98800 * 3 2 1 5 5 H 1.48501 * 109.47162 * 34.98670 * 3 2 1 6 6 H 1.48497 * 109.47246 * 154.98666 * 3 2 1 7 7 C 1.38809 * 120.00072 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99843 * 186.83279 * 7 2 1 9 9 N 1.36932 * 120.00429 * 6.82358 * 7 2 1 10 10 C 1.47030 * 125.64558 * 353.95045 * 9 7 2 11 11 C 1.54323 * 107.27045 * 181.02171 * 10 9 7 12 12 H 1.09003 * 110.87241 * 263.75442 * 11 10 9 13 13 O 1.42894 * 110.72058 * 140.55407 * 11 10 9 14 14 C 1.55159 * 102.94390 * 22.19107 * 11 10 9 15 15 H 1.09000 * 111.00279 * 82.57240 * 14 11 10 16 16 C 1.53001 * 111.00484 * 206.42735 * 14 11 10 17 17 N 1.46496 * 109.47214 * 184.99782 * 16 14 11 18 18 C 1.34779 * 120.00280 * 179.97438 * 17 16 14 19 19 O 1.21545 * 119.99593 * 0.02562 * 18 17 16 20 20 C 1.47854 * 120.00119 * 180.02562 * 18 17 16 21 21 N 1.28998 * 124.85504 * 0.02562 * 20 18 17 22 22 C 1.33158 * 118.21225 * 179.97438 * 21 20 18 23 23 C 1.41369 * 129.83057 * 180.02562 * 22 21 20 24 24 N 1.31017 * 120.66530 * 179.97438 * 23 22 21 25 25 C 1.32360 * 122.68190 * 359.97438 * 24 23 22 26 26 C 1.36524 * 121.01696 * 0.04124 * 25 24 23 27 27 C 1.39653 * 119.14214 * 359.97164 * 26 25 24 28 28 S 1.75906 * 132.43423 * 180.37712 * 27 26 25 29 29 C 1.47423 * 125.65349 * 173.90167 * 9 7 2 30 30 H 0.97000 * 120.00036 * 359.97438 * 1 2 3 31 31 H 1.08992 * 109.88201 * 61.60074 * 10 9 7 32 32 H 1.09001 * 109.88036 * 300.43794 * 10 9 7 33 33 H 0.96700 * 114.00077 * 66.47774 * 13 11 10 34 34 H 1.09003 * 109.46952 * 304.99570 * 16 14 11 35 35 H 1.08999 * 109.47161 * 64.99514 * 16 14 11 36 36 H 0.96999 * 120.00023 * 0.02562 * 17 16 14 37 37 H 1.07996 * 119.66501 * 359.97438 * 23 22 21 38 38 H 1.08000 * 119.48890 * 180.02562 * 25 24 23 39 39 H 1.08001 * 120.43319 * 179.97438 * 26 25 24 40 40 H 1.08999 * 110.36197 * 37.07202 * 29 9 7 41 41 H 1.08999 * 110.37017 * 274.75102 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.3922 2.1073 -1.3948 5 1 1.5042 2.6200 0.8028 6 1 3.5964 1.4122 0.5920 7 6 2.0102 -1.2021 -0.0005 8 1 3.0846 -1.2054 0.1107 9 7 1.3329 -2.3838 -0.1420 10 6 -0.1292 -2.5346 -0.1757 11 6 -0.4311 -4.0408 -0.3231 12 1 -0.6024 -4.3022 -1.3674 13 8 -1.5533 -4.4124 0.4796 14 6 0.8663 -4.7086 0.2043 15 1 0.8586 -4.7718 1.2924 16 6 1.0655 -6.0903 -0.4218 17 7 2.2304 -6.7384 0.1857 18 6 2.5991 -7.9722 -0.2122 19 8 1.9652 -8.5470 -1.0755 20 6 3.7745 -8.6265 0.4013 21 7 4.5118 -8.1044 1.3221 22 6 5.5410 -8.8133 1.7818 23 6 6.4946 -8.4869 2.7731 24 7 7.4452 -9.3311 3.0895 25 6 7.5691 -10.5166 2.5140 26 6 6.6971 -10.9228 1.5453 27 6 5.6607 -10.0690 1.1616 28 16 4.3626 -10.2316 -0.0143 29 6 1.9490 -3.7153 -0.2866 30 1 -0.4850 0.8400 0.0004 31 1 -0.5385 -1.9895 -1.0262 32 1 -0.5621 -2.1587 0.7513 33 1 -2.3896 -4.0213 0.1918 34 1 0.1786 -6.6996 -0.2472 35 1 1.2274 -5.9833 -1.4944 36 1 2.7361 -6.2798 0.8748 37 1 6.4390 -7.5320 3.2744 38 1 8.3725 -11.1724 2.8152 39 1 6.8072 -11.8920 1.0816 40 1 2.8416 -3.7897 0.3346 41 1 2.1952 -3.9081 -1.3307 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958243574.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:44 Heat of formation + Delta-G solvation = -6.769741 kcal Electronic energy + Delta-G solvation = -26876.751599 eV Core-core repulsion = 22883.272032 eV Total energy + Delta-G solvation = -3993.479567 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.05837 -41.03400 -39.82109 -38.74195 -36.65328 -36.23558 -34.09354 -33.27866 -32.10409 -31.14617 -29.35328 -27.81319 -26.89164 -25.61257 -24.74939 -23.66027 -22.31317 -21.73435 -21.25530 -19.93829 -19.13095 -18.73221 -18.39787 -18.05973 -17.29680 -17.02414 -16.89885 -16.77694 -16.10311 -15.89771 -15.72107 -15.62681 -15.28019 -14.94440 -14.78482 -14.39825 -14.06473 -13.93054 -13.71897 -13.62926 -13.25194 -13.10615 -12.78074 -12.75094 -12.47746 -12.29624 -12.00342 -11.89390 -11.80023 -11.79424 -11.44096 -11.10630 -10.82256 -10.77511 -10.71348 -10.43906 -10.18727 -9.50856 -8.93170 -7.88257 -5.23447 -1.30316 -0.25434 -0.18190 0.31322 0.64848 1.46321 1.47678 1.56561 1.76883 1.78743 2.47359 2.52727 2.59234 3.21149 3.23493 3.33653 3.37967 3.51856 3.53910 3.70384 3.80450 3.87975 4.14749 4.23497 4.39735 4.43628 4.51464 4.58754 4.62792 4.69188 4.72513 4.85805 4.92391 5.09648 5.29418 5.32085 5.43797 5.48074 5.70531 5.94826 6.16254 6.24350 6.74534 6.79333 6.90147 7.06826 7.73418 8.36990 9.22352 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.013458 B = 0.002372 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.027352 B =11802.263328 C =13402.786413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C -0.065 4.065 3 Si 0.977 3.023 4 H -0.287 1.287 5 H -0.296 1.296 6 H -0.267 1.267 7 C -0.243 4.243 8 H 0.085 0.915 9 N -0.625 5.625 10 C 0.160 3.840 11 C 0.099 3.901 12 H 0.080 0.920 13 O -0.569 6.569 14 C -0.091 4.091 15 H 0.086 0.914 16 C 0.144 3.856 17 N -0.687 5.687 18 C 0.595 3.405 19 O -0.548 6.548 20 C 0.036 3.964 21 N -0.419 5.419 22 C -0.003 4.003 23 C 0.194 3.806 24 N -0.491 5.491 25 C 0.114 3.886 26 C -0.120 4.120 27 C -0.161 4.161 28 S 0.200 5.800 29 C 0.138 3.862 30 H 0.247 0.753 31 H 0.017 0.983 32 H 0.015 0.985 33 H 0.394 0.606 34 H 0.083 0.917 35 H 0.080 0.920 36 H 0.418 0.582 37 H 0.188 0.812 38 H 0.207 0.793 39 H 0.178 0.822 40 H 0.052 0.948 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.445 -24.866 2.444 27.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.258 4.258 3 Si 0.805 3.195 4 H -0.214 1.214 5 H -0.222 1.222 6 H -0.191 1.191 7 C -0.372 4.372 8 H 0.103 0.897 9 N -0.352 5.352 10 C 0.034 3.966 11 C 0.038 3.962 12 H 0.098 0.902 13 O -0.377 6.377 14 C -0.111 4.111 15 H 0.105 0.895 16 C 0.021 3.979 17 N -0.338 5.338 18 C 0.376 3.624 19 O -0.425 6.425 20 C -0.248 4.248 21 N -0.137 5.137 22 C -0.129 4.129 23 C 0.023 3.977 24 N -0.200 5.200 25 C -0.036 4.036 26 C -0.145 4.145 27 C -0.287 4.287 28 S 0.457 5.543 29 C 0.013 3.987 30 H 0.057 0.943 31 H 0.036 0.964 32 H 0.033 0.967 33 H 0.243 0.757 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.255 0.745 37 H 0.204 0.796 38 H 0.223 0.777 39 H 0.196 0.804 40 H 0.070 0.930 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 11.476 -25.476 2.194 28.028 hybrid contribution -0.253 2.080 -0.019 2.095 sum 11.223 -23.396 2.175 26.040 Atomic orbital electron populations 1.70163 1.06302 1.25364 1.57978 1.25664 0.96624 1.01056 1.02467 0.85078 0.77924 0.79210 0.77251 1.21436 1.22246 1.19127 1.19467 0.91690 0.83658 1.42361 0.89716 1.44606 1.02132 1.02441 1.86029 1.21616 0.84653 0.91914 0.98413 1.22873 0.85922 0.93356 0.94002 0.90174 1.86387 1.19135 1.73887 1.58256 1.22421 0.94513 0.92946 1.01202 0.89531 1.21356 0.87617 0.91291 0.97669 1.45753 1.30990 1.15759 1.41333 1.16945 0.81892 0.81778 0.81749 1.90843 1.54494 1.64885 1.32293 1.27101 1.00709 0.97658 0.99316 1.65758 1.04022 1.34808 1.09147 1.20323 0.97671 0.91832 1.03118 1.23159 0.85712 0.99213 0.89651 1.67621 1.20653 1.04753 1.26945 1.23169 0.97755 0.92116 0.90595 1.21534 0.92643 1.01108 0.99198 1.24873 1.02481 0.99692 1.01652 1.85066 1.19743 1.13767 1.35721 1.21803 0.94962 0.83758 0.98160 0.94338 0.96434 0.96658 0.75658 0.89929 0.90206 0.74456 0.79560 0.77662 0.80423 0.92965 0.94904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -56.42 10.36 21.65 0.22 -56.19 16 2 C -0.06 -3.66 5.48 84.86 0.47 -3.19 16 3 Si 0.98 45.35 29.56 68.60 2.03 47.37 16 4 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 6 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 7 C -0.24 -13.40 10.26 84.03 0.86 -12.54 16 8 H 0.09 4.45 7.84 -2.91 -0.02 4.43 16 9 N -0.62 -31.28 3.39 -691.98 -2.35 -33.62 16 10 C 0.16 7.64 5.15 86.73 0.45 8.09 16 11 C 0.10 3.48 3.80 31.78 0.12 3.60 16 12 H 0.08 2.52 8.04 -2.39 -0.02 2.50 16 13 O -0.57 -18.46 13.39 -148.98 -1.99 -20.45 16 14 C -0.09 -2.94 2.77 -9.40 -0.03 -2.97 16 15 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 16 C 0.14 3.88 5.13 86.38 0.44 4.32 16 17 N -0.69 -17.48 5.50 -465.97 -2.56 -20.04 16 18 C 0.60 15.97 7.83 86.79 0.68 16.65 16 19 O -0.55 -17.12 16.91 -3.86 -0.07 -17.19 16 20 C 0.04 0.85 7.41 87.66 0.65 1.50 16 21 N -0.42 -9.74 10.08 -180.90 -1.82 -11.56 16 22 C 0.00 -0.07 6.99 40.28 0.28 0.21 16 23 C 0.19 3.34 11.30 85.59 0.97 4.31 16 24 N -0.49 -7.71 10.28 -194.81 -2.00 -9.72 16 25 C 0.11 1.15 11.12 84.21 0.94 2.08 16 26 C -0.12 -1.25 10.09 22.21 0.22 -1.03 16 27 C -0.16 -2.74 6.62 23.18 0.15 -2.59 16 28 S 0.20 3.73 23.17 -56.49 -1.31 2.42 16 29 C 0.14 5.29 6.65 86.86 0.58 5.87 16 30 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 31 H 0.02 0.93 7.37 -2.39 -0.02 0.91 16 32 H 0.02 0.84 7.46 -2.39 -0.02 0.82 16 33 H 0.39 9.78 9.12 -74.06 -0.68 9.10 16 34 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.08 2.14 7.96 -2.39 -0.02 2.12 16 36 H 0.42 10.01 8.10 -92.71 -0.75 9.25 16 37 H 0.19 2.57 8.06 -2.91 -0.02 2.55 16 38 H 0.21 0.43 8.06 -2.91 -0.02 0.41 16 39 H 0.18 0.64 8.06 -2.91 -0.02 0.62 16 40 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 41 H 0.03 1.23 7.91 -2.39 -0.02 1.21 16 Total: -1.00 -73.39 365.27 -3.39 -76.78 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -0.32 Total: 17.89 kcal Atomic # 6 Polarization: 17.53 SS G_CDS: 6.78 Total: 24.31 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -8.51 Total: -131.14 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -2.06 Total: -37.64 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 3.73 SS G_CDS: -1.31 Total: 2.42 kcal Total: -73.39 -3.39 -76.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958243574.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.008 kcal (2) G-P(sol) polarization free energy of solvation -73.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds