Wall clock time and date at job start Wed Apr 1 2020 05:35:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72205 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72053 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72089 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.08001 * 120.00353 * 0.28242 * 7 2 1 9 9 N 1.36936 * 119.99709 * 180.27733 * 7 2 1 10 10 C 1.46507 * 119.99957 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.49772 * 324.93909 * 10 9 7 12 12 C 1.53193 * 109.49755 * 84.99802 * 10 9 7 13 13 N 1.46923 * 108.77512 * 174.58888 * 12 10 9 14 14 C 1.34774 * 120.63308 * 126.41659 * 13 12 10 15 15 O 1.21283 * 119.99964 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00353 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47148 * 179.97438 * 16 14 13 18 18 F 1.39900 * 109.47070 * 60.00153 * 17 16 14 19 19 F 1.39898 * 109.46748 * 180.02562 * 17 16 14 20 20 F 1.39901 * 109.46965 * 299.99902 * 17 16 14 21 21 C 1.46925 * 118.73965 * 306.38884 * 13 12 10 22 22 C 1.53204 * 108.77203 * 53.60863 * 21 13 12 23 23 C 1.53033 * 109.31515 * 305.36678 * 22 21 13 24 24 H 1.09006 * 109.45664 * 301.34434 * 23 22 21 25 25 C 1.52995 * 109.46150 * 181.38441 * 23 22 21 26 26 F 1.39901 * 109.47210 * 299.93343 * 25 23 22 27 27 F 1.39902 * 109.47160 * 59.93008 * 25 23 22 28 28 F 1.39894 * 109.47421 * 179.97438 * 25 23 22 29 29 H 0.97004 * 119.99499 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00448 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.58835 * 294.38049 * 12 10 9 32 32 H 1.09009 * 109.58543 * 54.65760 * 12 10 9 33 33 H 1.09002 * 109.47180 * 300.00465 * 16 14 13 34 34 H 1.09004 * 109.46676 * 59.99668 * 16 14 13 35 35 H 1.08998 * 109.59158 * 173.39529 * 21 13 12 36 36 H 1.09001 * 109.59022 * 293.82587 * 21 13 12 37 37 H 1.08997 * 109.49021 * 65.31806 * 22 21 13 38 38 H 1.08999 * 109.49729 * 185.41065 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5037 2.0428 -1.4001 5 1 1.4449 2.6543 0.6941 6 1 3.5449 1.4418 0.7059 7 6 2.0101 -1.2022 0.0059 8 1 1.4701 -2.1376 0.0058 9 7 3.3795 -1.2023 0.0116 10 6 4.1120 -2.4711 0.0172 11 1 3.5630 -3.2055 0.6067 12 6 4.2646 -2.9798 -1.4197 13 7 5.1105 -4.1809 -1.4088 14 6 4.6854 -5.3256 -1.9793 15 8 3.5947 -5.3709 -2.5080 16 6 5.5650 -6.5490 -1.9604 17 6 4.8507 -7.7017 -2.6690 18 9 4.5829 -7.3403 -3.9937 19 9 5.6671 -8.8376 -2.6509 20 9 3.6488 -7.9812 -2.0097 21 6 6.4292 -4.1105 -0.7646 22 6 6.2523 -3.5891 0.6651 23 6 5.4986 -2.2577 0.6286 24 1 6.0556 -1.5416 0.0244 25 6 5.3503 -1.7168 2.0521 26 9 4.6348 -2.6353 2.8278 27 9 6.6178 -1.5217 2.6112 28 9 4.6618 -0.4995 2.0190 29 1 -0.4849 0.8401 -0.0004 30 1 3.8646 -0.3623 0.0112 31 1 3.2838 -3.2272 -1.8259 32 1 4.7299 -2.2080 -2.0330 33 1 6.5016 -6.3311 -2.4735 34 1 5.7733 -6.8308 -0.9282 35 1 6.8767 -5.1040 -0.7384 36 1 7.0733 -3.4320 -1.3239 37 1 5.6837 -4.3132 1.2485 38 1 7.2307 -3.4409 1.1219 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998235382.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:10 Heat of formation + Delta-G solvation = -319.939233 kcal Electronic energy + Delta-G solvation = -32918.185322 eV Core-core repulsion = 27352.366604 eV Total energy + Delta-G solvation = -5565.818718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.101 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.19204 -49.77890 -47.74460 -47.58792 -47.32080 -47.14208 -40.36450 -37.92830 -34.96761 -33.16007 -32.22913 -31.45136 -29.19505 -27.26184 -24.67329 -23.90825 -23.27582 -21.93888 -20.88225 -19.62461 -18.79412 -18.65885 -18.16898 -17.98824 -17.82437 -17.51801 -17.23109 -16.62558 -15.81622 -15.61639 -14.90611 -14.66049 -14.56246 -14.48481 -14.12479 -14.05194 -13.99757 -13.85007 -13.78232 -13.75640 -13.65218 -13.52531 -13.39521 -13.34824 -13.29064 -13.08854 -12.89150 -12.61003 -12.43551 -12.20242 -11.80490 -11.48251 -11.33929 -11.00649 -10.92505 -10.53436 -10.15931 -10.07761 -9.65143 -9.28129 -8.72781 -7.44841 -5.83949 -3.24485 2.31983 2.35783 2.83265 3.01544 3.34001 3.38001 3.42359 3.51157 3.75263 3.84176 3.98548 4.06572 4.20914 4.36788 4.53302 4.57892 4.72234 4.73482 4.78471 4.91623 5.01956 5.12009 5.20350 5.37498 5.44413 5.49719 5.57558 5.75699 5.82293 6.24416 6.32672 6.51685 7.17625 7.85162 7.92906 8.31896 9.07224 9.79012 9.93003 11.33157 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.003840 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.323809 B = 7289.839927 C = 8747.828734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.017 3.983 3 Si 0.876 3.124 4 H -0.284 1.284 5 H -0.290 1.290 6 H -0.269 1.269 7 C -0.255 4.255 8 H 0.093 0.907 9 N -0.738 5.738 10 C 0.177 3.823 11 H 0.075 0.925 12 C 0.097 3.903 13 N -0.605 5.605 14 C 0.516 3.484 15 O -0.512 6.512 16 C -0.197 4.197 17 C 0.472 3.528 18 F -0.173 7.173 19 F -0.185 7.185 20 F -0.171 7.171 21 C 0.109 3.891 22 C -0.132 4.132 23 C -0.146 4.146 24 H 0.112 0.888 25 C 0.458 3.542 26 F -0.181 7.181 27 F -0.196 7.196 28 F -0.163 7.163 29 H 0.261 0.739 30 H 0.368 0.632 31 H 0.107 0.893 32 H 0.069 0.931 33 H 0.136 0.864 34 H 0.138 0.862 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.984 -12.003 -0.962 23.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.180 4.180 3 Si 0.706 3.294 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.195 1.195 7 C -0.384 4.384 8 H 0.111 0.889 9 N -0.381 5.381 10 C 0.065 3.935 11 H 0.093 0.907 12 C -0.027 4.027 13 N -0.340 5.340 14 C 0.301 3.699 15 O -0.387 6.387 16 C -0.238 4.238 17 C 0.417 3.583 18 F -0.154 7.154 19 F -0.167 7.167 20 F -0.152 7.152 21 C -0.014 4.014 22 C -0.171 4.171 23 C -0.167 4.167 24 H 0.130 0.870 25 C 0.404 3.596 26 F -0.163 7.163 27 F -0.178 7.178 28 F -0.144 7.144 29 H 0.071 0.929 30 H 0.203 0.797 31 H 0.126 0.874 32 H 0.087 0.913 33 H 0.154 0.846 34 H 0.156 0.844 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 19.061 -12.054 -1.215 22.585 hybrid contribution 0.584 1.267 0.238 1.415 sum 19.645 -10.786 -0.977 22.433 Atomic orbital electron populations 1.69701 1.05175 1.26047 1.56207 1.24635 0.95123 0.97179 1.01070 0.86686 0.79861 0.85070 0.77819 1.21013 1.21595 1.19469 1.18989 0.79815 0.94984 1.44614 0.88873 1.42834 1.04587 1.01119 1.89583 1.20473 0.87960 0.91067 0.93995 0.90665 1.22759 0.96501 0.84038 0.99446 1.48182 1.18259 1.11553 1.55991 1.19723 0.86936 0.83740 0.79512 1.90868 1.20903 1.83340 1.43577 1.23046 1.01829 0.93147 1.05748 1.19737 0.77774 0.82784 0.78022 1.93229 1.94162 1.91465 1.36583 1.93190 1.72766 1.54255 1.96481 1.93245 1.47304 1.94240 1.80445 1.21751 0.84586 1.02470 0.92621 1.21978 1.01499 0.95708 0.97891 1.22886 1.02264 0.99888 0.91644 0.87008 1.20396 0.73137 0.76788 0.89323 1.93159 1.78743 1.66557 1.77803 1.93129 1.41524 1.95358 1.87778 1.93273 1.79504 1.45100 1.96558 0.92853 0.79743 0.87449 0.91255 0.84556 0.84445 0.89268 0.90276 0.89704 0.89140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.64 13.97 55.49 0.78 -27.86 16 2 C 0.02 0.48 5.50 -17.43 -0.10 0.39 16 3 Si 0.88 21.42 27.74 -169.99 -4.71 16.71 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.27 -6.16 6.21 56.52 0.35 -5.80 16 7 C -0.25 -6.86 10.41 -15.06 -0.16 -7.02 16 8 H 0.09 2.75 8.06 -52.49 -0.42 2.32 16 9 N -0.74 -15.95 3.66 -53.30 -0.19 -16.14 16 10 C 0.18 2.96 2.24 -67.81 -0.15 2.81 16 11 H 0.08 1.41 7.78 -51.93 -0.40 1.00 16 12 C 0.10 1.49 6.01 -3.71 -0.02 1.47 16 13 N -0.61 -6.95 2.97 -172.76 -0.51 -7.47 16 14 C 0.52 6.50 7.47 -10.99 -0.08 6.42 16 15 O -0.51 -9.09 14.25 5.55 0.08 -9.01 16 16 C -0.20 -1.51 4.10 -27.88 -0.11 -1.63 16 17 C 0.47 5.07 2.89 37.16 0.11 5.17 16 18 F -0.17 -2.24 16.40 2.25 0.04 -2.21 16 19 F -0.19 -1.76 17.32 2.25 0.04 -1.72 16 20 F -0.17 -2.31 16.40 2.25 0.04 -2.27 16 21 C 0.11 0.75 6.34 -3.71 -0.02 0.73 16 22 C -0.13 -1.12 5.11 -26.61 -0.14 -1.25 16 23 C -0.15 -1.84 1.82 -90.59 -0.16 -2.01 16 24 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 25 C 0.46 6.92 2.68 37.15 0.10 7.02 16 26 F -0.18 -2.96 16.34 2.25 0.04 -2.92 16 27 F -0.20 -2.63 16.77 2.25 0.04 -2.59 16 28 F -0.16 -3.09 14.36 2.25 0.03 -3.06 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.37 7.85 4.40 -40.82 -0.18 7.67 16 31 H 0.11 2.07 7.01 -51.93 -0.36 1.70 16 32 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 33 H 0.14 0.57 7.94 -51.93 -0.41 0.16 16 34 H 0.14 0.65 7.69 -51.93 -0.40 0.25 16 35 H 0.09 0.32 5.93 -51.93 -0.31 0.01 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.77 7.85 -51.93 -0.41 0.36 16 38 H 0.09 0.58 7.76 -51.93 -0.40 0.17 16 LS Contribution 332.33 15.07 5.01 5.01 Total: -1.00 -34.30 332.33 -3.84 -38.13 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -3.75 Total: 3.31 kcal Atomic # 6 Polarization: 12.83 SS G_CDS: -0.74 Total: 12.09 kcal Atomic # 7 Polarization: -51.54 SS G_CDS: 0.07 Total: -51.47 kcal Atomic # 8 Polarization: -9.09 SS G_CDS: 0.08 Total: -9.01 kcal Atomic # 9 Polarization: -14.98 SS G_CDS: 0.22 Total: -14.76 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.71 Total: 16.71 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.30 -3.84 -38.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998235382.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -281.808 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -316.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -319.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds