Wall clock time and date at job start Wed Apr 1 2020 05:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86800 * 120.00575 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72205 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72053 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72089 * 3 2 1 7 7 C 1.38817 * 119.99464 * 179.72036 * 2 1 3 8 8 H 1.08001 * 120.00353 * 0.28242 * 7 2 1 9 9 N 1.36936 * 119.99709 * 180.27733 * 7 2 1 10 10 C 1.46507 * 119.99957 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.49772 * 324.93909 * 10 9 7 12 12 C 1.53193 * 109.49755 * 84.99802 * 10 9 7 13 13 N 1.46923 * 108.77512 * 174.58888 * 12 10 9 14 14 C 1.34774 * 120.63308 * 126.41659 * 13 12 10 15 15 O 1.21283 * 119.99964 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00353 * 179.97438 * 14 13 12 17 17 C 1.52999 * 109.47148 * 179.97438 * 16 14 13 18 18 F 1.39900 * 109.47070 * 60.00153 * 17 16 14 19 19 F 1.39898 * 109.46748 * 180.02562 * 17 16 14 20 20 F 1.39901 * 109.46965 * 299.99902 * 17 16 14 21 21 C 1.46925 * 118.73965 * 306.38884 * 13 12 10 22 22 C 1.53204 * 108.77203 * 53.60863 * 21 13 12 23 23 C 1.53033 * 109.31515 * 305.36678 * 22 21 13 24 24 H 1.09006 * 109.45664 * 301.34434 * 23 22 21 25 25 C 1.52995 * 109.46150 * 181.38441 * 23 22 21 26 26 F 1.39901 * 109.47210 * 299.93343 * 25 23 22 27 27 F 1.39902 * 109.47160 * 59.93008 * 25 23 22 28 28 F 1.39894 * 109.47421 * 179.97438 * 25 23 22 29 29 H 0.97004 * 119.99499 * 0.02562 * 1 2 3 30 30 H 0.97000 * 120.00448 * 359.97438 * 9 7 2 31 31 H 1.08999 * 109.58835 * 294.38049 * 12 10 9 32 32 H 1.09009 * 109.58543 * 54.65760 * 12 10 9 33 33 H 1.09002 * 109.47180 * 300.00465 * 16 14 13 34 34 H 1.09004 * 109.46676 * 59.99668 * 16 14 13 35 35 H 1.08998 * 109.59158 * 173.39529 * 21 13 12 36 36 H 1.09001 * 109.59022 * 293.82587 * 21 13 12 37 37 H 1.08997 * 109.49021 * 65.31806 * 22 21 13 38 38 H 1.08999 * 109.49729 * 185.41065 * 22 21 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.5037 2.0428 -1.4001 5 1 1.4449 2.6543 0.6941 6 1 3.5449 1.4418 0.7059 7 6 2.0101 -1.2022 0.0059 8 1 1.4701 -2.1376 0.0058 9 7 3.3795 -1.2023 0.0116 10 6 4.1120 -2.4711 0.0172 11 1 3.5630 -3.2055 0.6067 12 6 4.2646 -2.9798 -1.4197 13 7 5.1105 -4.1809 -1.4088 14 6 4.6854 -5.3256 -1.9793 15 8 3.5947 -5.3709 -2.5080 16 6 5.5650 -6.5490 -1.9604 17 6 4.8507 -7.7017 -2.6690 18 9 4.5829 -7.3403 -3.9937 19 9 5.6671 -8.8376 -2.6509 20 9 3.6488 -7.9812 -2.0097 21 6 6.4292 -4.1105 -0.7646 22 6 6.2523 -3.5891 0.6651 23 6 5.4986 -2.2577 0.6286 24 1 6.0556 -1.5416 0.0244 25 6 5.3503 -1.7168 2.0521 26 9 4.6348 -2.6353 2.8278 27 9 6.6178 -1.5217 2.6112 28 9 4.6618 -0.4995 2.0190 29 1 -0.4849 0.8401 -0.0004 30 1 3.8646 -0.3623 0.0112 31 1 3.2838 -3.2272 -1.8259 32 1 4.7299 -2.2080 -2.0330 33 1 6.5016 -6.3311 -2.4735 34 1 5.7733 -6.8308 -0.9282 35 1 6.8767 -5.1040 -0.7384 36 1 7.0733 -3.4320 -1.3239 37 1 5.6837 -4.3132 1.2485 38 1 7.2307 -3.4409 1.1219 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998235382.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:09 Heat of formation + Delta-G solvation = -344.228060 kcal Electronic energy + Delta-G solvation = -32919.238564 eV Core-core repulsion = 27352.366604 eV Total energy + Delta-G solvation = -5566.871961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 348.101 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -51.04187 -50.99711 -48.56060 -48.52085 -48.48597 -48.46135 -41.35615 -39.07247 -36.42411 -34.50955 -33.32196 -32.85915 -30.54194 -28.34552 -26.10675 -25.00791 -24.28178 -23.26887 -22.13767 -20.58002 -19.85079 -19.64682 -19.51686 -19.17628 -19.16647 -18.48980 -18.33476 -17.62545 -16.93357 -16.61124 -16.44241 -16.00720 -15.46266 -15.43126 -15.40545 -15.28374 -14.99757 -14.93123 -14.85238 -14.82421 -14.70028 -14.65403 -14.64108 -14.55338 -14.41998 -14.27792 -14.13887 -13.71757 -13.43932 -13.33911 -13.02352 -12.88465 -12.70101 -12.28767 -12.13531 -11.99965 -11.82549 -11.63521 -11.22584 -11.02196 -9.92758 -9.33223 -8.04671 -5.41643 1.36624 1.39712 1.43996 1.48031 1.52444 1.87667 1.99534 2.47005 2.74643 2.85228 2.99513 3.03958 3.06991 3.09838 3.27890 3.49101 3.62929 3.84072 3.96241 4.04271 4.15095 4.18374 4.22630 4.24180 4.41954 4.58319 4.65407 4.84656 4.90117 5.05809 5.20740 5.37692 5.72417 6.16646 6.27363 6.99669 7.03702 7.72879 7.92604 9.16635 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.012886 B = 0.003840 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2172.323809 B = 7289.839927 C = 8747.828734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.983 5.983 2 C -0.056 4.056 3 Si 0.947 3.053 4 H -0.274 1.274 5 H -0.300 1.300 6 H -0.241 1.241 7 C -0.231 4.231 8 H 0.049 0.951 9 N -0.741 5.741 10 C 0.174 3.826 11 H 0.045 0.955 12 C 0.110 3.890 13 N -0.601 5.601 14 C 0.506 3.494 15 O -0.579 6.579 16 C -0.179 4.179 17 C 0.462 3.538 18 F -0.192 7.192 19 F -0.176 7.176 20 F -0.195 7.195 21 C 0.103 3.897 22 C -0.128 4.128 23 C -0.136 4.136 24 H 0.140 0.860 25 C 0.452 3.548 26 F -0.194 7.194 27 F -0.181 7.181 28 F -0.190 7.190 29 H 0.258 0.742 30 H 0.373 0.627 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.186 0.814 34 H 0.179 0.821 35 H 0.139 0.861 36 H 0.109 0.891 37 H 0.077 0.923 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.380 -12.383 -0.758 28.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.633 5.633 2 C -0.248 4.248 3 Si 0.774 3.226 4 H -0.200 1.200 5 H -0.227 1.227 6 H -0.166 1.166 7 C -0.362 4.362 8 H 0.067 0.933 9 N -0.385 5.385 10 C 0.065 3.935 11 H 0.064 0.936 12 C -0.016 4.016 13 N -0.334 5.334 14 C 0.294 3.706 15 O -0.458 6.458 16 C -0.219 4.219 17 C 0.408 3.592 18 F -0.173 7.173 19 F -0.157 7.157 20 F -0.176 7.176 21 C -0.018 4.018 22 C -0.167 4.167 23 C -0.156 4.156 24 H 0.157 0.843 25 C 0.398 3.602 26 F -0.175 7.175 27 F -0.162 7.162 28 F -0.172 7.172 29 H 0.067 0.933 30 H 0.209 0.791 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.203 0.797 34 H 0.196 0.804 35 H 0.156 0.844 36 H 0.127 0.873 37 H 0.096 0.904 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 24.578 -12.483 -0.993 27.584 hybrid contribution -1.079 1.221 0.218 1.643 sum 23.499 -11.262 -0.775 26.070 Atomic orbital electron populations 1.69901 1.07396 1.26734 1.59223 1.25474 0.95945 1.01282 1.02059 0.85543 0.79264 0.79527 0.78291 1.20007 1.22731 1.16553 1.18847 0.82360 0.93117 1.41882 0.93268 1.42720 1.02644 1.03350 1.89835 1.20564 0.89938 0.88263 0.94783 0.93645 1.22136 0.95371 0.86244 0.97816 1.48197 1.19433 1.09857 1.55913 1.20607 0.86665 0.85067 0.78226 1.90854 1.24061 1.84463 1.46410 1.23143 1.01504 0.88819 1.08418 1.20275 0.77399 0.84111 0.77436 1.93192 1.94349 1.91666 1.38114 1.93207 1.72135 1.53997 1.96388 1.93201 1.49124 1.94519 1.80785 1.22276 0.82137 1.06199 0.91156 1.22109 1.02434 0.92702 0.99423 1.22916 0.99682 1.03306 0.89681 0.84252 1.20814 0.73166 0.75710 0.90552 1.93138 1.79235 1.66816 1.78330 1.93154 1.40145 1.95226 1.87708 1.93209 1.80330 1.46890 1.96727 0.93340 0.79124 0.92654 0.89807 0.79655 0.80354 0.84368 0.87268 0.90397 0.85362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -64.08 13.97 21.65 0.30 -63.78 16 2 C -0.06 -3.30 5.50 84.86 0.47 -2.83 16 3 Si 0.95 45.05 27.74 68.60 1.90 46.95 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 6 H -0.24 -10.25 6.21 99.48 0.62 -9.63 16 7 C -0.23 -13.07 10.41 84.03 0.88 -12.20 16 8 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 9 N -0.74 -32.28 3.66 -322.56 -1.18 -33.46 16 10 C 0.17 5.79 2.24 45.07 0.10 5.89 16 11 H 0.05 1.77 7.78 -2.39 -0.02 1.75 16 12 C 0.11 3.35 6.01 86.36 0.52 3.87 16 13 N -0.60 -12.11 2.97 -818.88 -2.43 -14.55 16 14 C 0.51 11.84 7.47 87.66 0.65 12.50 16 15 O -0.58 -21.28 14.25 -3.04 -0.04 -21.32 16 16 C -0.18 -1.97 4.10 29.85 0.12 -1.84 16 17 C 0.46 9.05 2.89 71.98 0.21 9.26 16 18 F -0.19 -4.86 16.40 44.97 0.74 -4.12 16 19 F -0.18 -2.85 17.32 44.97 0.78 -2.07 16 20 F -0.19 -5.25 16.40 44.97 0.74 -4.51 16 21 C 0.10 0.76 6.34 86.37 0.55 1.31 16 22 C -0.13 -1.49 5.11 30.67 0.16 -1.33 16 23 C -0.14 -2.97 1.82 -10.77 -0.02 -2.99 16 24 H 0.14 2.36 8.14 -2.38 -0.02 2.34 16 25 C 0.45 12.57 2.68 71.98 0.19 12.76 16 26 F -0.19 -6.13 16.34 44.97 0.73 -5.40 16 27 F -0.18 -4.15 16.77 44.97 0.75 -3.39 16 28 F -0.19 -6.89 14.36 44.97 0.65 -6.25 16 29 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 30 H 0.37 15.44 4.40 -92.71 -0.41 15.04 16 31 H 0.05 2.28 7.01 -2.39 -0.02 2.27 16 32 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 33 H 0.19 0.25 7.94 -2.39 -0.02 0.23 16 34 H 0.18 0.54 7.69 -2.39 -0.02 0.52 16 35 H 0.14 -0.21 5.93 -2.39 -0.01 -0.22 16 36 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 37 H 0.08 1.08 7.85 -2.39 -0.02 1.06 16 38 H 0.13 0.69 7.76 -2.39 -0.02 0.67 16 Total: -1.00 -85.73 332.33 7.41 -78.32 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: 0.65 Total: 9.18 kcal Atomic # 6 Polarization: 20.58 SS G_CDS: 3.83 Total: 24.40 kcal Atomic # 7 Polarization: -108.48 SS G_CDS: -3.31 Total: -111.79 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.04 Total: -21.32 kcal Atomic # 9 Polarization: -30.13 SS G_CDS: 4.39 Total: -25.74 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 1.90 Total: 46.95 kcal Total: -85.73 7.41 -78.32 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998235382.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -265.911 kcal (2) G-P(sol) polarization free energy of solvation -85.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -351.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -344.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds