Wall clock time and date at job start Wed Apr 1 2020 04:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99987 * 2 1 4 4 H 1.48507 * 109.47152 * 269.99559 * 3 2 1 5 5 H 1.48502 * 109.47304 * 29.99880 * 3 2 1 6 6 H 1.48500 * 109.47348 * 150.00143 * 3 2 1 7 7 C 1.38814 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99427 * 359.97438 * 7 2 1 9 9 N 1.36929 * 120.00426 * 180.02562 * 7 2 1 10 10 C 1.46507 * 120.00110 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49202 * 324.99433 * 10 9 7 12 12 C 1.53039 * 109.52041 * 204.91667 * 10 9 7 13 13 C 1.53044 * 109.53495 * 178.66422 * 12 10 9 14 14 C 1.53194 * 109.31364 * 61.36393 * 13 12 10 15 15 N 1.46925 * 108.77308 * 305.36672 * 14 13 12 16 16 C 1.34778 * 120.63198 * 233.58057 * 15 14 13 17 17 O 1.21774 * 120.00295 * 172.86150 * 16 15 14 18 18 C 1.46288 * 119.99658 * 352.86648 * 16 15 14 19 19 N 1.34881 * 126.50006 * 353.86017 * 18 16 15 20 20 C 1.30183 * 109.72977 * 179.97438 * 19 18 16 21 21 N 1.36246 * 109.82670 * 0.02562 * 20 19 18 22 22 C 1.36573 * 132.76871 * 180.02562 * 21 20 19 23 23 C 1.35126 * 120.57916 * 179.97438 * 22 21 20 24 24 Cl 1.73599 * 119.79500 * 179.97438 * 23 22 21 25 25 C 1.40475 * 120.41316 * 359.96842 * 23 22 21 26 26 C 1.36318 * 119.55469 * 0.03039 * 25 23 22 27 27 C 1.37248 * 107.18882 * 359.76495 * 21 20 19 28 28 C 1.46931 * 118.74024 * 53.61009 * 15 14 13 29 29 H 0.97004 * 119.99871 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00414 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.46210 * 298.67775 * 12 10 9 32 32 H 1.08997 * 109.46426 * 58.65049 * 12 10 9 33 33 H 1.09003 * 109.50154 * 301.41706 * 13 12 10 34 34 H 1.08996 * 109.52373 * 181.33204 * 13 12 10 35 35 H 1.08999 * 109.59015 * 185.57688 * 14 13 12 36 36 H 1.09007 * 109.58904 * 65.15037 * 14 13 12 37 37 H 1.07995 * 125.08849 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.71048 * 359.97438 * 22 21 20 39 39 H 1.08001 * 120.21813 * 180.02562 * 25 23 22 40 40 H 1.08000 * 120.38910 * 179.97438 * 26 25 23 41 41 H 1.09003 * 109.58231 * 186.60175 * 28 15 14 42 42 H 1.08998 * 109.70637 * 66.24705 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0000 11 1 3.5649 -3.2068 0.5891 12 6 5.5005 -2.2598 0.6083 13 6 6.2537 -3.5917 0.6390 14 6 6.4265 -4.1092 -0.7925 15 7 5.1062 -4.1772 -1.4334 16 6 4.6788 -5.3200 -2.0060 17 8 3.5360 -5.4043 -2.4181 18 6 5.5878 -6.4591 -2.1324 19 7 6.9023 -6.4740 -1.8303 20 6 7.3941 -7.6561 -2.0662 21 7 6.4155 -8.4779 -2.5388 22 6 6.4115 -9.7870 -2.9277 23 6 5.2743 -10.3704 -3.3662 24 17 5.2926 -12.0357 -3.8563 25 6 4.0773 -9.6378 -3.4279 26 6 4.0685 -8.3303 -3.0423 27 6 5.2569 -7.7436 -2.5858 28 6 4.2607 -2.9755 -1.4387 29 1 -0.4850 0.8401 -0.0004 30 1 3.8647 -0.3621 0.0004 31 1 6.0562 -1.5423 0.0046 32 1 5.3978 -1.8773 1.6238 33 1 5.6863 -4.3172 1.2220 34 1 7.2334 -3.4458 1.0938 35 1 6.8736 -5.1030 -0.7704 36 1 7.0695 -3.4294 -1.3517 37 1 8.4237 -7.9425 -1.9106 38 1 7.3253 -10.3610 -2.8845 39 1 3.1701 -10.1074 -3.7785 40 1 3.1559 -7.7544 -3.0846 41 1 3.2787 -3.2215 -1.8430 42 1 4.7247 -2.2023 -2.0511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999191778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:11 Heat of formation + Delta-G solvation = 80.006799 kcal Electronic energy + Delta-G solvation = -27733.521153 eV Core-core repulsion = 23741.760793 eV Total energy + Delta-G solvation = -3991.760360 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.31975 -39.70359 -38.31305 -37.20302 -36.86444 -34.50957 -33.85319 -32.22664 -31.23183 -31.18078 -29.32713 -28.30059 -25.52438 -24.54871 -23.87723 -23.06081 -22.79561 -21.55698 -20.36155 -19.31919 -18.18828 -17.48199 -17.38741 -16.73537 -16.55082 -16.39912 -15.71604 -15.04502 -14.87167 -14.79393 -14.44709 -14.16106 -13.86984 -13.54204 -13.46295 -13.27554 -12.99869 -12.62700 -12.59455 -12.44821 -12.35629 -11.84044 -11.70392 -11.57043 -11.17657 -11.10409 -10.93763 -10.84074 -10.59017 -10.23134 -10.07466 -9.80505 -9.72213 -9.56896 -9.47218 -9.03638 -8.32032 -7.94245 -7.22742 -5.72183 -3.08847 0.09458 0.48070 1.13844 2.07218 2.18885 2.69532 3.25164 3.41061 3.43527 3.48623 3.55978 3.82660 4.01737 4.07896 4.32426 4.37292 4.62697 4.74409 4.82095 5.08927 5.19054 5.27447 5.38880 5.41893 5.50672 5.59572 5.61192 5.70709 5.82025 5.93178 5.94505 6.05383 6.11771 6.20411 6.26661 6.38984 6.49890 6.58170 6.82406 6.85283 7.05162 7.22171 7.77555 8.04815 8.43726 8.47846 9.24409 9.96161 10.15384 11.45964 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.021211 B = 0.002336 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.724792 B =11983.184006 C =13052.046195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.005 3.995 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.277 1.277 7 C -0.245 4.245 8 H 0.092 0.908 9 N -0.743 5.743 10 C 0.174 3.826 11 H 0.059 0.941 12 C -0.130 4.130 13 C -0.128 4.128 14 C 0.081 3.919 15 N -0.589 5.589 16 C 0.596 3.404 17 O -0.542 6.542 18 C -0.033 4.033 19 N -0.413 5.413 20 C 0.153 3.847 21 N -0.362 5.362 22 C 0.059 3.941 23 C -0.045 4.045 24 Cl -0.036 7.036 25 C -0.117 4.117 26 C -0.042 4.042 27 C 0.066 3.934 28 C 0.093 3.907 29 H 0.259 0.741 30 H 0.362 0.638 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.132 0.868 36 H 0.060 0.940 37 H 0.221 0.779 38 H 0.178 0.822 39 H 0.153 0.847 40 H 0.172 0.828 41 H 0.095 0.905 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.605 -24.393 -6.100 31.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.191 4.191 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.218 1.218 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.110 0.890 9 N -0.385 5.385 10 C 0.063 3.937 11 H 0.077 0.923 12 C -0.168 4.168 13 C -0.167 4.167 14 C -0.042 4.042 15 N -0.321 5.321 16 C 0.383 3.617 17 O -0.419 6.419 18 C -0.168 4.168 19 N -0.128 5.128 20 C -0.122 4.122 21 N -0.033 5.033 22 C -0.063 4.063 23 C -0.075 4.075 24 Cl -0.007 7.007 25 C -0.139 4.139 26 C -0.062 4.062 27 C -0.046 4.046 28 C -0.031 4.031 29 H 0.069 0.931 30 H 0.195 0.805 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.149 0.851 36 H 0.078 0.922 37 H 0.237 0.763 38 H 0.195 0.805 39 H 0.170 0.830 40 H 0.189 0.811 41 H 0.113 0.887 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 19.317 -23.915 -6.004 31.323 hybrid contribution 0.377 0.444 -0.345 0.677 sum 19.693 -23.472 -6.350 31.290 Atomic orbital electron populations 1.69708 1.05101 1.25763 1.57394 1.24679 0.95229 0.97166 1.01977 0.86559 0.79209 0.85040 0.77772 1.21071 1.21773 1.20303 1.19116 0.80431 0.94854 1.43046 0.89022 1.42738 1.04112 1.01781 1.89887 1.20454 0.91006 0.89354 0.92873 0.92285 1.21879 0.96708 0.96763 1.01489 1.21876 1.00359 0.97639 0.96831 1.22567 0.83739 1.05584 0.92261 1.47965 1.18506 1.10907 1.54698 1.16550 0.85452 0.81121 0.78551 1.90835 1.18037 1.82179 1.50876 1.20707 0.91231 0.93280 1.11534 1.69955 1.08214 1.18415 1.16250 1.25320 0.95603 0.85261 1.06028 1.42882 1.10546 1.08603 1.41313 1.21294 1.00107 0.83366 1.01563 1.20240 0.94641 0.88231 1.04368 1.98412 1.98704 1.13885 1.89744 1.21116 0.97425 0.93762 1.01560 1.20859 0.97022 0.94033 0.94278 1.19320 0.87329 0.92426 1.05508 1.22694 0.95644 0.84215 1.00572 0.93077 0.80510 0.92273 0.91612 0.91845 0.91188 0.85138 0.92201 0.76286 0.80508 0.82973 0.81100 0.88650 0.92107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.80 13.97 55.49 0.78 -29.03 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.88 22.36 27.74 -169.99 -4.71 17.65 16 4 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 5 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 6 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 7 C -0.24 -7.05 10.41 -15.06 -0.16 -7.21 16 8 H 0.09 2.87 8.06 -52.49 -0.42 2.45 16 9 N -0.74 -17.90 4.93 -53.31 -0.26 -18.17 16 10 C 0.17 3.49 2.92 -67.81 -0.20 3.30 16 11 H 0.06 1.29 8.08 -51.93 -0.42 0.88 16 12 C -0.13 -2.08 5.36 -26.69 -0.14 -2.22 16 13 C -0.13 -1.69 6.08 -26.61 -0.16 -1.85 16 14 C 0.08 1.10 6.10 -3.71 -0.02 1.08 16 15 N -0.59 -9.91 2.97 -174.44 -0.52 -10.43 16 16 C 0.60 10.37 7.64 -13.02 -0.10 10.27 16 17 O -0.54 -10.94 15.20 5.12 0.08 -10.87 16 18 C -0.03 -0.47 6.75 -82.57 -0.56 -1.02 16 19 N -0.41 -4.75 7.65 -10.53 -0.08 -4.83 16 20 C 0.15 1.22 12.73 -89.53 -1.14 0.08 16 21 N -0.36 -3.13 2.94 -62.15 -0.18 -3.31 16 22 C 0.06 0.36 10.70 -16.55 -0.18 0.19 16 23 C -0.04 -0.30 6.28 -39.85 -0.25 -0.55 16 24 Cl -0.04 -0.21 28.93 -51.86 -1.50 -1.71 16 25 C -0.12 -0.92 9.87 -39.43 -0.39 -1.31 16 26 C -0.04 -0.44 9.74 -39.55 -0.39 -0.83 16 27 C 0.07 0.78 6.72 -83.99 -0.56 0.21 16 28 C 0.09 1.81 6.03 -3.71 -0.02 1.79 16 29 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 30 H 0.36 8.48 5.66 -40.82 -0.23 8.25 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.13 1.65 4.11 -62.43 -0.26 1.40 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.22 0.68 8.06 -52.49 -0.42 0.25 16 38 H 0.18 0.45 8.06 -52.48 -0.42 0.03 16 39 H 0.15 0.88 8.06 -52.49 -0.42 0.45 16 40 H 0.17 1.94 7.19 -52.49 -0.38 1.56 16 41 H 0.10 2.16 7.00 -51.93 -0.36 1.80 16 42 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 359.32 15.07 5.41 5.41 Total: -1.00 -35.32 359.32 -10.40 -45.72 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.04 Total: 7.58 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: -4.36 Total: 1.99 kcal Atomic # 7 Polarization: -65.50 SS G_CDS: -0.27 Total: -65.77 kcal Atomic # 8 Polarization: -10.94 SS G_CDS: 0.08 Total: -10.87 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.65 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.50 Total: -1.71 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.32 -10.40 -45.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999191778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.727 kcal (2) G-P(sol) polarization free energy of solvation -35.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds