Wall clock time and date at job start Wed Apr 1 2020 04:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 119.99987 * 2 1 4 4 H 1.48507 * 109.47152 * 269.99559 * 3 2 1 5 5 H 1.48502 * 109.47304 * 29.99880 * 3 2 1 6 6 H 1.48500 * 109.47348 * 150.00143 * 3 2 1 7 7 C 1.38814 * 120.00408 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99427 * 359.97438 * 7 2 1 9 9 N 1.36929 * 120.00426 * 180.02562 * 7 2 1 10 10 C 1.46507 * 120.00110 * 179.97438 * 9 7 2 11 11 H 1.08998 * 109.49202 * 324.99433 * 10 9 7 12 12 C 1.53039 * 109.52041 * 204.91667 * 10 9 7 13 13 C 1.53044 * 109.53495 * 178.66422 * 12 10 9 14 14 C 1.53194 * 109.31364 * 61.36393 * 13 12 10 15 15 N 1.46925 * 108.77308 * 305.36672 * 14 13 12 16 16 C 1.34778 * 120.63198 * 233.58057 * 15 14 13 17 17 O 1.21774 * 120.00295 * 172.86150 * 16 15 14 18 18 C 1.46288 * 119.99658 * 352.86648 * 16 15 14 19 19 N 1.34881 * 126.50006 * 353.86017 * 18 16 15 20 20 C 1.30183 * 109.72977 * 179.97438 * 19 18 16 21 21 N 1.36246 * 109.82670 * 0.02562 * 20 19 18 22 22 C 1.36573 * 132.76871 * 180.02562 * 21 20 19 23 23 C 1.35126 * 120.57916 * 179.97438 * 22 21 20 24 24 Cl 1.73599 * 119.79500 * 179.97438 * 23 22 21 25 25 C 1.40475 * 120.41316 * 359.96842 * 23 22 21 26 26 C 1.36318 * 119.55469 * 0.03039 * 25 23 22 27 27 C 1.37248 * 107.18882 * 359.76495 * 21 20 19 28 28 C 1.46931 * 118.74024 * 53.61009 * 15 14 13 29 29 H 0.97004 * 119.99871 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00414 * 359.97438 * 9 7 2 31 31 H 1.08998 * 109.46210 * 298.67775 * 12 10 9 32 32 H 1.08997 * 109.46426 * 58.65049 * 12 10 9 33 33 H 1.09003 * 109.50154 * 301.41706 * 13 12 10 34 34 H 1.08996 * 109.52373 * 181.33204 * 13 12 10 35 35 H 1.08999 * 109.59015 * 185.57688 * 14 13 12 36 36 H 1.09007 * 109.58904 * 65.15037 * 14 13 12 37 37 H 1.07995 * 125.08849 * 180.02562 * 20 19 18 38 38 H 1.08003 * 119.71048 * 359.97438 * 22 21 20 39 39 H 1.08001 * 120.21813 * 180.02562 * 25 23 22 40 40 H 1.08000 * 120.38910 * 179.97438 * 26 25 23 41 41 H 1.09003 * 109.58231 * 186.60175 * 28 15 14 42 42 H 1.08998 * 109.70637 * 66.24705 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1122 -2.4709 0.0000 11 1 3.5649 -3.2068 0.5891 12 6 5.5005 -2.2598 0.6083 13 6 6.2537 -3.5917 0.6390 14 6 6.4265 -4.1092 -0.7925 15 7 5.1062 -4.1772 -1.4334 16 6 4.6788 -5.3200 -2.0060 17 8 3.5360 -5.4043 -2.4181 18 6 5.5878 -6.4591 -2.1324 19 7 6.9023 -6.4740 -1.8303 20 6 7.3941 -7.6561 -2.0662 21 7 6.4155 -8.4779 -2.5388 22 6 6.4115 -9.7870 -2.9277 23 6 5.2743 -10.3704 -3.3662 24 17 5.2926 -12.0357 -3.8563 25 6 4.0773 -9.6378 -3.4279 26 6 4.0685 -8.3303 -3.0423 27 6 5.2569 -7.7436 -2.5858 28 6 4.2607 -2.9755 -1.4387 29 1 -0.4850 0.8401 -0.0004 30 1 3.8647 -0.3621 0.0004 31 1 6.0562 -1.5423 0.0046 32 1 5.3978 -1.8773 1.6238 33 1 5.6863 -4.3172 1.2220 34 1 7.2334 -3.4458 1.0938 35 1 6.8736 -5.1030 -0.7704 36 1 7.0695 -3.4294 -1.3517 37 1 8.4237 -7.9425 -1.9106 38 1 7.3253 -10.3610 -2.8845 39 1 3.1701 -10.1074 -3.7785 40 1 3.1559 -7.7544 -3.0846 41 1 3.2787 -3.2215 -1.8430 42 1 4.7247 -2.2023 -2.0511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999191778.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:10 Heat of formation + Delta-G solvation = 57.964110 kcal Electronic energy + Delta-G solvation = -27734.476996 eV Core-core repulsion = 23741.760793 eV Total energy + Delta-G solvation = -3992.716203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.06180 -41.00122 -39.00045 -38.65260 -37.43947 -36.26465 -34.66150 -33.93250 -32.90371 -31.91528 -30.74725 -29.45706 -26.74948 -25.69221 -25.17869 -24.21103 -23.56150 -23.03455 -21.80587 -20.47682 -19.56935 -19.10432 -18.12568 -17.61700 -17.36127 -17.33040 -16.82749 -16.60972 -16.22154 -15.83747 -15.62427 -15.37654 -15.30805 -15.00457 -14.68617 -14.29572 -14.10871 -14.00766 -13.89706 -13.79916 -13.28759 -13.19288 -12.96520 -12.59215 -12.45771 -12.28801 -12.09856 -12.06353 -11.90739 -11.89556 -11.83168 -11.38385 -11.35522 -11.12159 -10.64308 -10.31788 -9.82437 -9.27749 -8.70755 -8.04359 -5.40584 -0.59869 -0.23769 0.58864 1.17615 1.36534 1.41993 1.49043 1.51593 2.00256 2.05353 2.43897 2.47247 3.19332 3.23995 3.25947 3.52175 3.53789 3.62914 3.67867 3.90037 4.04268 4.08722 4.13950 4.24224 4.35594 4.37643 4.57820 4.66855 4.73191 4.76757 4.86953 4.88200 4.95884 5.05359 5.11999 5.20124 5.24641 5.35717 5.44920 5.60916 5.74952 5.99562 6.19273 6.36884 6.58674 7.03895 7.16276 7.76524 7.99969 9.17455 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.021211 B = 0.002336 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.724792 B =11983.184006 C =13052.046195 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.065 4.065 3 Si 0.963 3.037 4 H -0.277 1.277 5 H -0.293 1.293 6 H -0.245 1.245 7 C -0.237 4.237 8 H 0.044 0.956 9 N -0.743 5.743 10 C 0.172 3.828 11 H 0.028 0.972 12 C -0.121 4.121 13 C -0.120 4.120 14 C 0.080 3.920 15 N -0.593 5.593 16 C 0.586 3.414 17 O -0.592 6.592 18 C -0.085 4.085 19 N -0.431 5.431 20 C 0.182 3.818 21 N -0.364 5.364 22 C 0.088 3.912 23 C -0.064 4.064 24 Cl -0.020 7.020 25 C -0.084 4.084 26 C -0.090 4.090 27 C 0.068 3.932 28 C 0.106 3.894 29 H 0.259 0.741 30 H 0.371 0.629 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.111 0.889 35 H 0.148 0.852 36 H 0.074 0.926 37 H 0.277 0.723 38 H 0.226 0.774 39 H 0.169 0.831 40 H 0.145 0.855 41 H 0.047 0.953 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.064 -26.194 -6.027 36.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.256 4.256 3 Si 0.789 3.211 4 H -0.204 1.204 5 H -0.220 1.220 6 H -0.169 1.169 7 C -0.368 4.368 8 H 0.062 0.938 9 N -0.386 5.386 10 C 0.062 3.938 11 H 0.046 0.954 12 C -0.159 4.159 13 C -0.158 4.158 14 C -0.041 4.041 15 N -0.324 5.324 16 C 0.377 3.623 17 O -0.473 6.473 18 C -0.216 4.216 19 N -0.145 5.145 20 C -0.095 4.095 21 N -0.034 5.034 22 C -0.034 4.034 23 C -0.094 4.094 24 Cl 0.009 6.991 25 C -0.105 4.105 26 C -0.110 4.110 27 C -0.045 4.045 28 C -0.020 4.020 29 H 0.068 0.932 30 H 0.205 0.795 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.129 0.871 35 H 0.164 0.836 36 H 0.092 0.908 37 H 0.292 0.708 38 H 0.243 0.757 39 H 0.187 0.813 40 H 0.163 0.837 41 H 0.065 0.935 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 24.848 -25.730 -5.914 36.255 hybrid contribution -1.309 0.616 -0.456 1.517 sum 23.538 -25.114 -6.370 35.005 Atomic orbital electron populations 1.69916 1.07384 1.26871 1.59287 1.25619 0.96232 1.01654 1.02139 0.85297 0.78796 0.78769 0.78217 1.20353 1.22007 1.16877 1.18961 0.82661 0.93198 1.41998 0.93772 1.42639 1.02377 1.03616 1.89992 1.20593 0.93079 0.87024 0.93072 0.95399 1.21808 0.93745 0.99006 1.01330 1.21874 1.01754 0.95469 0.96716 1.22849 0.81956 1.07076 0.92213 1.48025 1.19336 1.09860 1.55204 1.17146 0.85531 0.82085 0.77582 1.90788 1.20405 1.83197 1.52960 1.20026 0.92185 0.92985 1.16369 1.69716 1.06846 1.20601 1.17362 1.26409 0.96883 0.83677 1.02514 1.43075 1.09537 1.09419 1.41417 1.22074 1.01494 0.82045 0.97833 1.20279 0.94468 0.89148 1.05512 1.98426 1.98653 1.12376 1.89630 1.21370 0.98831 0.92461 0.97859 1.20664 0.96460 0.95410 0.98478 1.19313 0.88693 0.92226 1.04291 1.22202 0.94218 0.85793 0.99748 0.93215 0.79534 0.90528 0.91282 0.92932 0.87077 0.83585 0.90816 0.70759 0.75743 0.81314 0.83692 0.93458 0.91373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -66.07 13.97 21.65 0.30 -65.77 16 2 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 3 Si 0.96 46.80 27.74 68.60 1.90 48.70 16 4 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 5 H -0.29 -14.33 7.11 99.48 0.71 -13.62 16 6 H -0.24 -10.50 6.52 99.48 0.65 -9.85 16 7 C -0.24 -14.49 10.41 84.04 0.88 -13.61 16 8 H 0.04 3.05 8.06 -2.91 -0.02 3.02 16 9 N -0.74 -36.78 4.93 -322.57 -1.59 -38.37 16 10 C 0.17 7.22 2.92 45.07 0.13 7.35 16 11 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 12 C -0.12 -3.68 5.36 30.62 0.16 -3.52 16 13 C -0.12 -2.90 6.08 30.67 0.19 -2.72 16 14 C 0.08 2.07 6.10 86.36 0.53 2.60 16 15 N -0.59 -21.02 2.97 -823.98 -2.45 -23.47 16 16 C 0.59 22.22 7.64 86.34 0.66 22.88 16 17 O -0.59 -27.09 15.20 -4.58 -0.07 -27.16 16 18 C -0.08 -2.45 6.75 41.24 0.28 -2.17 16 19 N -0.43 -9.04 7.65 -187.23 -1.43 -10.48 16 20 C 0.18 2.12 12.73 179.97 2.29 4.41 16 21 N -0.36 -5.14 2.94 -350.54 -1.03 -6.17 16 22 C 0.09 0.69 10.70 83.24 0.89 1.58 16 23 C -0.06 -0.68 6.28 22.10 0.14 -0.54 16 24 Cl -0.02 -0.16 28.93 -2.72 -0.08 -0.24 16 25 C -0.08 -1.24 9.87 22.37 0.22 -1.01 16 26 C -0.09 -2.03 9.74 22.29 0.22 -1.81 16 27 C 0.07 1.63 6.72 39.24 0.26 1.89 16 28 C 0.11 4.42 6.03 86.36 0.52 4.94 16 29 H 0.26 16.41 8.31 -92.71 -0.77 15.64 16 30 H 0.37 17.00 5.66 -92.71 -0.52 16.48 16 31 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 32 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.15 3.43 4.11 -23.11 -0.09 3.34 16 36 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 37 H 0.28 -0.25 8.06 -2.91 -0.02 -0.28 16 38 H 0.23 -0.41 8.06 -2.91 -0.02 -0.43 16 39 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 40 H 0.15 3.93 7.19 -2.91 -0.02 3.91 16 41 H 0.05 2.40 7.00 -2.39 -0.02 2.38 16 42 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 Total: -1.00 -87.03 359.32 3.79 -83.24 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: 0.40 Total: 23.01 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: 7.83 Total: 16.70 kcal Atomic # 7 Polarization: -138.06 SS G_CDS: -6.20 Total: -144.26 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.07 Total: -27.16 kcal Atomic # 14 Polarization: 46.80 SS G_CDS: 1.90 Total: 48.70 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal Total: -87.03 3.79 -83.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999191778.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.208 kcal (2) G-P(sol) polarization free energy of solvation -87.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds