Wall clock time and date at job start Wed Apr 1 2020 04:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86807 * 119.99713 * 2 1 4 4 H 1.48494 * 109.47198 * 239.99860 * 3 2 1 5 5 H 1.48502 * 109.46920 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46966 * 119.99781 * 3 2 1 7 7 C 1.38809 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00212 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99852 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99963 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.50136 * 325.00490 * 10 9 7 12 12 C 1.53043 * 109.52324 * 204.91962 * 10 9 7 13 13 C 1.53042 * 109.53512 * 178.67235 * 12 10 9 14 14 C 1.53191 * 109.31434 * 61.36571 * 13 12 10 15 15 N 1.46928 * 108.77640 * 305.36368 * 14 13 12 16 16 C 1.34773 * 120.63209 * 233.59003 * 15 14 13 17 17 O 1.21721 * 120.00248 * 174.18785 * 16 15 14 18 18 C 1.46579 * 119.99768 * 354.18440 * 16 15 14 19 19 C 1.40543 * 126.58072 * 306.73972 * 18 16 15 20 20 N 1.30743 * 108.73852 * 179.97438 * 19 18 16 21 21 N 1.40018 * 109.60496 * 359.97438 * 20 19 18 22 22 C 1.36268 * 132.00561 * 180.02562 * 21 20 19 23 23 C 1.35179 * 120.73046 * 179.97438 * 22 21 20 24 24 C 1.40147 * 120.32776 * 359.97379 * 23 22 21 25 25 C 1.36548 * 119.40049 * 0.02789 * 24 23 22 26 26 Cl 1.73604 * 120.38123 * 180.02562 * 25 24 23 27 27 C 1.36551 * 107.90560 * 359.76551 * 21 20 19 28 28 C 1.46921 * 118.73750 * 53.60673 * 15 14 13 29 29 H 0.96998 * 120.00657 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99750 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.45766 * 298.68742 * 12 10 9 32 32 H 1.08994 * 109.45564 * 58.65170 * 12 10 9 33 33 H 1.09004 * 109.49423 * 301.41371 * 13 12 10 34 34 H 1.08998 * 109.52119 * 181.33355 * 13 12 10 35 35 H 1.09004 * 109.58128 * 185.57872 * 14 13 12 36 36 H 1.08992 * 109.58718 * 65.15296 * 14 13 12 37 37 H 1.08004 * 125.62834 * 359.94621 * 19 18 16 38 38 H 1.08006 * 119.63667 * 0.02562 * 22 21 20 39 39 H 1.07998 * 119.83481 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.29913 * 180.02562 * 24 23 22 41 41 H 1.08998 * 109.58870 * 186.60497 * 28 15 14 42 42 H 1.09004 * 109.70432 * 66.25389 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9691 -3.5509 -0.5887 12 6 1.1811 -4.7538 -0.6072 13 6 1.9581 -6.0720 -0.6377 14 6 2.3201 -6.4800 0.7938 15 7 3.0394 -5.3703 1.4343 16 6 4.2429 -5.5714 2.0065 17 8 4.8763 -4.6266 2.4398 18 6 4.7890 -6.9279 2.1072 19 6 4.1505 -8.0486 2.6654 20 7 4.9514 -9.0779 2.5727 21 7 6.1458 -8.6895 1.9538 22 6 7.2743 -9.3828 1.6335 23 6 8.3135 -8.7682 1.0254 24 6 8.2446 -7.4035 0.7140 25 6 7.1182 -6.6996 1.0308 26 17 7.0054 -5.0083 0.6561 27 6 6.0517 -7.3600 1.6568 28 6 2.4214 -4.0374 1.4393 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 0.2821 -4.8761 -0.0032 32 1 0.9010 -4.4737 -1.6227 33 1 2.8699 -5.9434 -1.2210 34 1 1.3418 -6.8476 -1.0923 35 1 2.9574 -7.3640 0.7716 36 1 1.4102 -6.6968 1.3531 37 1 3.1617 -8.0579 3.0998 38 1 7.3389 -10.4353 1.8672 39 1 9.2011 -9.3316 0.7785 40 1 9.0750 -6.9130 0.2279 41 1 3.1254 -3.3098 1.8432 42 1 1.5200 -4.0525 2.0520 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999661310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:05 Heat of formation + Delta-G solvation = 88.230650 kcal Electronic energy + Delta-G solvation = -28368.431197 eV Core-core repulsion = 24377.027450 eV Total energy + Delta-G solvation = -3991.403747 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.51602 -39.60382 -37.81665 -37.09755 -36.54940 -34.37938 -33.03230 -32.15464 -31.25662 -31.11159 -29.37180 -27.98789 -25.34413 -24.28995 -23.98343 -23.23322 -22.41987 -21.76935 -20.21070 -19.02569 -17.90557 -17.27938 -17.02592 -16.77627 -16.40154 -16.04255 -15.47517 -15.39472 -14.92527 -14.40905 -14.14184 -13.94122 -13.59403 -13.45513 -13.30768 -13.00418 -12.93918 -12.73261 -12.52131 -12.29757 -12.25885 -11.86041 -11.36314 -11.25649 -10.98334 -10.91537 -10.78367 -10.61377 -10.49087 -10.19639 -10.18586 -9.87184 -9.76482 -9.69386 -9.49774 -9.00446 -8.23056 -7.90526 -6.94535 -5.74215 -3.03552 0.13449 0.56285 1.50615 2.07641 2.09834 2.71776 3.05652 3.46454 3.49546 3.52516 3.54926 3.89495 3.98961 4.24473 4.33538 4.62615 4.77601 4.90532 4.99571 5.02946 5.09389 5.20510 5.29171 5.36852 5.52509 5.54690 5.61695 5.69329 5.72802 5.86053 5.95347 6.04855 6.12041 6.24159 6.28956 6.32989 6.42290 6.57668 6.85581 6.91000 7.06031 7.10862 7.76149 7.79885 8.43994 8.56833 9.55929 10.10540 10.45947 11.48116 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.003209 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.080043 B = 8722.326049 C = 9810.810305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.011 4.011 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.240 4.240 8 H 0.071 0.929 9 N -0.718 5.718 10 C 0.169 3.831 11 H 0.050 0.950 12 C -0.125 4.125 13 C -0.129 4.129 14 C 0.109 3.891 15 N -0.600 5.600 16 C 0.590 3.410 17 O -0.526 6.526 18 C -0.275 4.275 19 C 0.117 3.883 20 N -0.309 5.309 21 N -0.263 5.263 22 C 0.113 3.887 23 C -0.153 4.153 24 C -0.072 4.072 25 C -0.035 4.035 26 Cl -0.003 7.003 27 C 0.143 3.857 28 C 0.096 3.904 29 H 0.256 0.744 30 H 0.385 0.615 31 H 0.061 0.939 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.202 0.798 38 H 0.176 0.824 39 H 0.166 0.834 40 H 0.154 0.846 41 H 0.091 0.909 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.028 -24.244 0.991 28.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.207 4.207 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.371 4.371 8 H 0.089 0.911 9 N -0.359 5.359 10 C 0.058 3.942 11 H 0.068 0.932 12 C -0.163 4.163 13 C -0.168 4.168 14 C -0.014 4.014 15 N -0.334 5.334 16 C 0.376 3.624 17 O -0.402 6.402 18 C -0.290 4.290 19 C -0.062 4.062 20 N -0.131 5.131 21 N -0.029 5.029 22 C -0.013 4.013 23 C -0.175 4.175 24 C -0.096 4.096 25 C -0.064 4.064 26 Cl 0.026 6.974 27 C 0.022 3.978 28 C -0.029 4.029 29 H 0.065 0.935 30 H 0.219 0.781 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.218 0.782 38 H 0.194 0.806 39 H 0.183 0.817 40 H 0.172 0.828 41 H 0.109 0.891 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.448 -24.675 1.506 28.634 hybrid contribution -0.022 1.771 -0.142 1.776 sum 14.426 -22.905 1.364 27.104 Atomic orbital electron populations 1.69644 1.05093 1.25802 1.57620 1.24723 0.95489 0.97667 1.02795 0.86286 0.78569 0.83499 0.77989 1.21255 1.21711 1.21117 1.19228 0.91061 0.84005 1.42842 0.91137 1.42366 1.05767 0.99591 1.88170 1.20483 0.94824 0.86336 0.92566 0.93203 1.21816 0.98664 0.94140 1.01729 1.21866 1.00763 0.98129 0.95997 1.21724 0.96585 0.89373 0.93766 1.48089 1.18735 1.10943 1.55584 1.16912 0.80840 0.86406 0.78237 1.90836 1.58340 1.42759 1.48230 1.19904 0.94931 0.96785 1.17355 1.24071 0.99039 0.88299 0.94832 1.77604 0.91071 1.22350 1.22062 1.45996 1.12485 1.06559 1.37814 1.21650 0.83117 0.98930 0.97557 1.20833 0.99318 0.94773 1.02609 1.21272 0.96798 0.93870 0.97614 1.20148 0.94092 0.89415 1.02785 1.98492 1.97972 1.08938 1.91993 1.18811 0.94946 0.84980 0.99065 1.22737 0.97673 0.81548 1.00915 0.93466 0.78106 0.92033 0.91537 0.91772 0.91197 0.90560 0.91541 0.78151 0.80636 0.81687 0.82844 0.89077 0.92087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.29 13.06 55.49 0.72 -27.57 16 2 C -0.01 -0.31 5.50 -17.44 -0.10 -0.41 16 3 Si 0.91 22.95 29.55 -169.99 -5.02 17.93 16 4 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 5 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 6 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 7 C -0.24 -6.79 9.93 -15.06 -0.15 -6.94 16 8 H 0.07 1.99 7.83 -52.49 -0.41 1.57 16 9 N -0.72 -18.05 5.13 -53.31 -0.27 -18.32 16 10 C 0.17 3.42 2.92 -67.81 -0.20 3.22 16 11 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 12 C -0.13 -2.01 5.36 -26.69 -0.14 -2.15 16 13 C -0.13 -1.64 6.08 -26.61 -0.16 -1.80 16 14 C 0.11 1.34 5.97 -3.71 -0.02 1.32 16 15 N -0.60 -9.59 2.97 -174.34 -0.52 -10.11 16 16 C 0.59 10.02 6.68 -12.90 -0.09 9.93 16 17 O -0.53 -10.83 14.54 5.17 0.08 -10.75 16 18 C -0.27 -3.88 4.76 -104.68 -0.50 -4.37 16 19 C 0.12 1.34 10.14 -17.15 -0.17 1.16 16 20 N -0.31 -3.59 12.57 30.75 0.39 -3.21 16 21 N -0.26 -2.88 3.86 -10.52 -0.04 -2.92 16 22 C 0.11 0.77 11.17 -16.67 -0.19 0.59 16 23 C -0.15 -0.81 9.98 -39.95 -0.40 -1.21 16 24 C -0.07 -0.56 9.87 -39.48 -0.39 -0.95 16 25 C -0.04 -0.42 6.33 -39.46 -0.25 -0.67 16 26 Cl 0.00 -0.05 26.07 -51.86 -1.35 -1.40 16 27 C 0.14 1.86 6.74 -84.04 -0.57 1.29 16 28 C 0.10 1.84 6.02 -3.71 -0.02 1.82 16 29 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 30 H 0.39 10.14 7.80 -40.82 -0.32 9.82 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.08 0.84 5.42 -51.93 -0.28 0.56 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.20 1.68 8.06 -52.48 -0.42 1.26 16 38 H 0.18 0.61 8.06 -52.48 -0.42 0.19 16 39 H 0.17 0.22 8.06 -52.49 -0.42 -0.20 16 40 H 0.15 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.09 2.06 6.99 -51.93 -0.36 1.69 16 42 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 LS Contribution 362.05 15.07 5.46 5.46 Total: -1.00 -35.33 362.05 -9.06 -44.39 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.16 Total: 5.66 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -3.34 Total: 0.83 kcal Atomic # 7 Polarization: -62.39 SS G_CDS: 0.28 Total: -62.11 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.08 Total: -10.75 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.93 kcal Atomic # 17 Polarization: -0.05 SS G_CDS: -1.35 Total: -1.40 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.33 -9.06 -44.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999661310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.622 kcal (2) G-P(sol) polarization free energy of solvation -35.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds