Wall clock time and date at job start Wed Apr 1 2020 04:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86807 * 119.99713 * 2 1 4 4 H 1.48494 * 109.47198 * 239.99860 * 3 2 1 5 5 H 1.48502 * 109.46920 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46966 * 119.99781 * 3 2 1 7 7 C 1.38809 * 120.00514 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00212 * 180.02562 * 7 2 1 9 9 N 1.36940 * 119.99852 * 0.02562 * 7 2 1 10 10 C 1.46500 * 119.99963 * 179.97438 * 9 7 2 11 11 H 1.08999 * 109.50136 * 325.00490 * 10 9 7 12 12 C 1.53043 * 109.52324 * 204.91962 * 10 9 7 13 13 C 1.53042 * 109.53512 * 178.67235 * 12 10 9 14 14 C 1.53191 * 109.31434 * 61.36571 * 13 12 10 15 15 N 1.46928 * 108.77640 * 305.36368 * 14 13 12 16 16 C 1.34773 * 120.63209 * 233.59003 * 15 14 13 17 17 O 1.21721 * 120.00248 * 174.18785 * 16 15 14 18 18 C 1.46579 * 119.99768 * 354.18440 * 16 15 14 19 19 C 1.40543 * 126.58072 * 306.73972 * 18 16 15 20 20 N 1.30743 * 108.73852 * 179.97438 * 19 18 16 21 21 N 1.40018 * 109.60496 * 359.97438 * 20 19 18 22 22 C 1.36268 * 132.00561 * 180.02562 * 21 20 19 23 23 C 1.35179 * 120.73046 * 179.97438 * 22 21 20 24 24 C 1.40147 * 120.32776 * 359.97379 * 23 22 21 25 25 C 1.36548 * 119.40049 * 0.02789 * 24 23 22 26 26 Cl 1.73604 * 120.38123 * 180.02562 * 25 24 23 27 27 C 1.36551 * 107.90560 * 359.76551 * 21 20 19 28 28 C 1.46921 * 118.73750 * 53.60673 * 15 14 13 29 29 H 0.96998 * 120.00657 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99750 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.45766 * 298.68742 * 12 10 9 32 32 H 1.08994 * 109.45564 * 58.65170 * 12 10 9 33 33 H 1.09004 * 109.49423 * 301.41371 * 13 12 10 34 34 H 1.08998 * 109.52119 * 181.33355 * 13 12 10 35 35 H 1.09004 * 109.58128 * 185.57872 * 14 13 12 36 36 H 1.08992 * 109.58718 * 65.15296 * 14 13 12 37 37 H 1.08004 * 125.62834 * 359.94621 * 19 18 16 38 38 H 1.08006 * 119.63667 * 0.02562 * 22 21 20 39 39 H 1.07998 * 119.83481 * 179.97438 * 23 22 21 40 40 H 1.08002 * 120.29913 * 180.02562 * 24 23 22 41 41 H 1.08998 * 109.58870 * 186.60497 * 28 15 14 42 42 H 1.09004 * 109.70432 * 66.25389 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2124 5 1 1.2850 2.7465 0.0006 6 1 3.1038 1.6965 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 1 2.9691 -3.5509 -0.5887 12 6 1.1811 -4.7538 -0.6072 13 6 1.9581 -6.0720 -0.6377 14 6 2.3201 -6.4800 0.7938 15 7 3.0394 -5.3703 1.4343 16 6 4.2429 -5.5714 2.0065 17 8 4.8763 -4.6266 2.4398 18 6 4.7890 -6.9279 2.1072 19 6 4.1505 -8.0486 2.6654 20 7 4.9514 -9.0779 2.5727 21 7 6.1458 -8.6895 1.9538 22 6 7.2743 -9.3828 1.6335 23 6 8.3135 -8.7682 1.0254 24 6 8.2446 -7.4035 0.7140 25 6 7.1182 -6.6996 1.0308 26 17 7.0054 -5.0083 0.6561 27 6 6.0517 -7.3600 1.6568 28 6 2.4214 -4.0374 1.4393 29 1 -0.4851 0.8400 -0.0004 30 1 0.3556 -2.3881 -0.0002 31 1 0.2821 -4.8761 -0.0032 32 1 0.9010 -4.4737 -1.6227 33 1 2.8699 -5.9434 -1.2210 34 1 1.3418 -6.8476 -1.0923 35 1 2.9574 -7.3640 0.7716 36 1 1.4102 -6.6968 1.3531 37 1 3.1617 -8.0579 3.0998 38 1 7.3389 -10.4353 1.8672 39 1 9.2011 -9.3316 0.7785 40 1 9.0750 -6.9130 0.2279 41 1 3.1254 -3.3098 1.8432 42 1 1.5200 -4.0525 2.0520 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999661310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:04 Heat of formation + Delta-G solvation = 64.347900 kcal Electronic energy + Delta-G solvation = -28369.466831 eV Core-core repulsion = 24377.027450 eV Total energy + Delta-G solvation = -3992.439381 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.31233 -40.88375 -38.65547 -38.44154 -37.44993 -36.15227 -34.06634 -33.58374 -32.71969 -31.98871 -30.56830 -29.42348 -26.59172 -25.87232 -24.96743 -24.21079 -23.38281 -23.14994 -21.58324 -20.22029 -19.14413 -18.86079 -17.97281 -17.72013 -17.29970 -16.98401 -16.72076 -16.51267 -16.12240 -15.94799 -15.54551 -15.41300 -15.09158 -14.85450 -14.33908 -14.02961 -13.90215 -13.79069 -13.73782 -13.62845 -13.23056 -13.10946 -12.89078 -12.62659 -12.49558 -12.26100 -12.23449 -11.99935 -11.94598 -11.81442 -11.64604 -11.34239 -11.13304 -11.07672 -10.81646 -10.59353 -9.67349 -8.99665 -8.73142 -7.98248 -5.27078 -0.56047 -0.16273 0.73411 1.15450 1.32449 1.42962 1.46088 1.52238 1.82593 2.07323 2.29694 2.53722 3.13154 3.24396 3.34551 3.68003 3.75998 3.76691 3.83385 4.02153 4.11354 4.14680 4.26096 4.31680 4.37175 4.41256 4.49157 4.61822 4.73033 4.76790 4.88900 4.90640 4.93511 5.05756 5.10888 5.12664 5.21508 5.39764 5.44027 5.47559 5.63340 5.65862 6.24615 6.26913 6.55176 7.29895 7.31193 8.03457 8.29791 9.24236 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.015682 B = 0.003209 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.080043 B = 8722.326049 C = 9810.810305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.066 4.066 3 Si 0.966 3.034 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.245 4.245 8 H 0.062 0.938 9 N -0.728 5.728 10 C 0.169 3.831 11 H 0.025 0.975 12 C -0.116 4.116 13 C -0.120 4.120 14 C 0.108 3.892 15 N -0.599 5.599 16 C 0.590 3.410 17 O -0.576 6.576 18 C -0.318 4.318 19 C 0.129 3.871 20 N -0.321 5.321 21 N -0.264 5.264 22 C 0.112 3.888 23 C -0.136 4.136 24 C -0.041 4.041 25 C -0.082 4.082 26 Cl -0.046 7.046 27 C 0.136 3.864 28 C 0.113 3.887 29 H 0.253 0.747 30 H 0.378 0.622 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.109 0.891 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.225 0.775 38 H 0.217 0.783 39 H 0.219 0.781 40 H 0.180 0.820 41 H 0.047 0.953 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.779 -28.282 0.541 32.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.613 5.613 2 C -0.259 4.259 3 Si 0.795 3.205 4 H -0.205 1.205 5 H -0.214 1.214 6 H -0.211 1.211 7 C -0.377 4.377 8 H 0.080 0.920 9 N -0.368 5.368 10 C 0.059 3.941 11 H 0.043 0.957 12 C -0.154 4.154 13 C -0.158 4.158 14 C -0.014 4.014 15 N -0.332 5.332 16 C 0.379 3.621 17 O -0.455 6.455 18 C -0.333 4.333 19 C -0.050 4.050 20 N -0.142 5.142 21 N -0.028 5.028 22 C -0.013 4.013 23 C -0.157 4.157 24 C -0.065 4.065 25 C -0.111 4.111 26 Cl -0.017 7.017 27 C 0.014 3.986 28 C -0.013 4.013 29 H 0.062 0.938 30 H 0.211 0.789 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.127 0.873 35 H 0.114 0.886 36 H 0.110 0.890 37 H 0.241 0.759 38 H 0.233 0.767 39 H 0.236 0.764 40 H 0.197 0.803 41 H 0.066 0.934 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 16.214 -28.796 1.045 33.063 hybrid contribution -0.317 2.797 -0.036 2.815 sum 15.897 -25.999 1.008 30.491 Atomic orbital electron populations 1.69771 1.06230 1.26228 1.59072 1.25444 0.96381 1.00645 1.03401 0.85335 0.77430 0.79756 0.78013 1.20451 1.21366 1.21063 1.19449 0.90910 0.85554 1.41746 0.92029 1.42476 1.05490 1.00506 1.88362 1.20612 0.94346 0.86048 0.93054 0.95711 1.21714 0.98509 0.94222 1.00942 1.21845 1.00395 0.97062 0.96527 1.22005 0.97562 0.88509 0.93331 1.48080 1.18947 1.10351 1.55825 1.17365 0.80322 0.87343 0.77050 1.90794 1.59619 1.44769 1.50336 1.19584 0.96569 0.95745 1.21407 1.24365 0.99788 0.87134 0.93743 1.77552 0.91485 1.22272 1.22848 1.46299 1.13277 1.05941 1.37323 1.22667 0.81787 1.00684 0.96176 1.21503 1.00387 0.93448 1.00328 1.21835 0.95484 0.94895 0.94258 1.20329 0.96067 0.87982 1.06742 1.98470 1.98186 1.12455 1.92587 1.18929 0.94774 0.86117 0.98764 1.22150 0.96592 0.82940 0.99606 0.93790 0.78924 0.91000 0.92151 0.92857 0.87283 0.88596 0.89008 0.75852 0.76683 0.76407 0.80309 0.93393 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.89 13.06 21.65 0.28 -59.60 16 2 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 3 Si 0.97 48.51 29.55 68.60 2.03 50.53 16 4 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 5 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 6 H -0.28 -14.13 7.11 99.48 0.71 -13.42 16 7 C -0.24 -14.44 9.93 84.03 0.83 -13.60 16 8 H 0.06 3.67 7.83 -2.91 -0.02 3.64 16 9 N -0.73 -38.27 5.13 -322.56 -1.65 -39.92 16 10 C 0.17 7.18 2.92 45.07 0.13 7.31 16 11 H 0.02 1.17 8.08 -2.39 -0.02 1.15 16 12 C -0.12 -3.69 5.36 30.62 0.16 -3.52 16 13 C -0.12 -2.85 6.08 30.67 0.19 -2.66 16 14 C 0.11 2.47 5.97 86.36 0.52 2.99 16 15 N -0.60 -19.72 2.97 -823.71 -2.45 -22.17 16 16 C 0.59 21.05 6.68 86.42 0.58 21.63 16 17 O -0.58 -25.65 14.54 -4.42 -0.06 -25.71 16 18 C -0.32 -8.99 4.76 -19.90 -0.09 -9.08 16 19 C 0.13 2.77 10.14 85.42 0.87 3.63 16 20 N -0.32 -6.68 12.57 -56.62 -0.71 -7.39 16 21 N -0.26 -5.06 3.86 -187.20 -0.72 -5.78 16 22 C 0.11 1.00 11.17 83.30 0.93 1.93 16 23 C -0.14 -0.70 9.98 22.03 0.22 -0.48 16 24 C -0.04 -0.50 9.87 22.34 0.22 -0.28 16 25 C -0.08 -1.91 6.33 22.35 0.14 -1.77 16 26 Cl -0.05 -1.41 26.07 -2.72 -0.07 -1.48 16 27 C 0.14 3.43 6.74 39.52 0.27 3.70 16 28 C 0.11 4.60 6.02 86.36 0.52 5.13 16 29 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 30 H 0.38 20.67 7.80 -92.71 -0.72 19.95 16 31 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.10 1.91 5.42 -2.39 -0.01 1.90 16 36 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.23 3.31 8.06 -2.91 -0.02 3.28 16 38 H 0.22 0.16 8.06 -2.91 -0.02 0.13 16 39 H 0.22 -1.12 8.06 -2.91 -0.02 -1.14 16 40 H 0.18 1.24 8.06 -2.91 -0.02 1.22 16 41 H 0.05 2.36 6.99 -2.39 -0.02 2.34 16 42 H 0.06 2.49 8.14 -2.38 -0.02 2.47 16 Total: -1.00 -84.32 362.05 2.93 -81.39 By element: Atomic # 1 Polarization: 18.35 SS G_CDS: 0.34 Total: 18.69 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: 5.95 Total: 11.44 kcal Atomic # 7 Polarization: -129.62 SS G_CDS: -5.25 Total: -134.87 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.06 Total: -25.71 kcal Atomic # 14 Polarization: 48.51 SS G_CDS: 2.03 Total: 50.53 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.07 Total: -1.48 kcal Total: -84.32 2.93 -81.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999661310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.739 kcal (2) G-P(sol) polarization free energy of solvation -84.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds