Wall clock time and date at job start Wed Apr 1 2020 04:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 299.99482 * 3 2 1 6 6 H 1.48499 * 109.47344 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 163.07870 * 7 2 1 9 9 N 1.36937 * 120.00219 * 343.07619 * 7 2 1 10 10 C 1.46930 * 120.63259 * 331.83653 * 9 7 2 11 11 C 1.53183 * 108.89468 * 233.51494 * 10 9 7 12 12 C 1.53076 * 109.29478 * 305.57480 * 11 10 9 13 13 N 1.46505 * 109.45150 * 181.24130 * 12 11 10 14 14 C 1.34778 * 119.99485 * 84.78885 * 13 12 11 15 15 O 1.21773 * 120.00223 * 0.02562 * 14 13 12 16 16 C 1.46278 * 119.99538 * 179.97438 * 14 13 12 17 17 N 1.34884 * 126.50293 * 0.03317 * 16 14 13 18 18 C 1.30189 * 109.73248 * 179.97438 * 17 16 14 19 19 N 1.36241 * 109.82256 * 359.97438 * 18 17 16 20 20 C 1.36584 * 132.76659 * 180.02562 * 19 18 17 21 21 C 1.35128 * 120.57931 * 179.97438 * 20 19 18 22 22 Cl 1.73596 * 119.78926 * 180.02562 * 21 20 19 23 23 C 1.40466 * 120.41298 * 0.02562 * 21 20 19 24 24 C 1.36316 * 119.55354 * 0.02562 * 23 21 20 25 25 C 1.37245 * 107.19317 * 359.75716 * 19 18 17 26 26 C 1.53033 * 109.65646 * 61.15632 * 12 11 10 27 27 C 1.46925 * 120.63413 * 151.81378 * 9 7 2 28 28 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.58138 * 353.37071 * 10 9 7 30 30 H 1.08998 * 109.58912 * 113.65314 * 10 9 7 31 31 H 1.09005 * 109.50135 * 65.38839 * 11 10 9 32 32 H 1.09004 * 109.49749 * 185.48051 * 11 10 9 33 33 H 1.08990 * 109.33376 * 301.13470 * 12 11 10 34 34 H 0.96997 * 120.00106 * 264.79224 * 13 12 11 35 35 H 1.08001 * 125.08629 * 180.02562 * 18 17 16 36 36 H 1.08003 * 119.70306 * 359.97257 * 20 19 18 37 37 H 1.08003 * 120.22255 * 180.02562 * 23 21 20 38 38 H 1.08004 * 120.38690 * 179.97438 * 24 23 21 39 39 H 1.09003 * 109.49897 * 178.74799 * 26 12 11 40 40 H 1.09004 * 109.50093 * 58.65268 * 26 12 11 41 41 H 1.09001 * 109.58688 * 246.20238 * 27 9 7 42 42 H 1.08996 * 109.58570 * 6.47946 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3400 1.2681 11 6 0.4942 -3.3197 2.4148 12 6 0.8122 -4.7007 1.8363 13 7 1.0399 -5.6476 2.9308 14 6 -0.0050 -6.2695 3.5121 15 8 -1.1382 -6.0449 3.1272 16 6 0.2224 -7.2153 4.6046 17 7 1.4150 -7.5605 5.1318 18 6 1.2388 -8.4262 6.0881 19 7 -0.0899 -8.6901 6.2333 20 6 -0.7861 -9.5082 7.0769 21 6 -2.1336 -9.5820 7.0061 22 17 -2.9979 -10.6281 8.0888 23 6 -2.8390 -8.8177 6.0621 24 6 -2.1552 -7.9984 5.2140 25 6 -0.7582 -7.9294 5.3069 26 6 2.0675 -4.6173 0.9650 27 6 1.8138 -3.6528 -0.1979 28 1 -0.4850 0.8400 -0.0004 29 1 0.0995 -1.3342 1.6688 30 1 -0.6774 -2.6380 0.7364 31 1 1.3429 -2.9691 3.0021 32 1 -0.3879 -3.3839 3.0520 33 1 -0.0281 -5.0406 1.2310 34 1 1.9426 -5.8267 3.2372 35 1 2.0278 -8.8682 6.6785 36 1 -0.2550 -10.1011 7.8067 37 1 -3.9160 -8.8789 6.0085 38 1 -2.6840 -7.4051 4.4827 39 1 2.3043 -5.6062 0.5724 40 1 2.9025 -4.2536 1.5638 41 1 1.0401 -4.0605 -0.8485 42 1 2.7331 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001002861170.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:33 Heat of formation + Delta-G solvation = 67.630844 kcal Electronic energy + Delta-G solvation = -27292.614270 eV Core-core repulsion = 23300.317248 eV Total energy + Delta-G solvation = -3992.297022 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 2.30 seconds Orbital eigenvalues (eV) -43.28638 -39.45883 -38.32628 -37.20573 -36.84648 -34.33279 -33.86688 -32.08384 -31.18606 -30.08675 -29.59779 -28.56785 -25.26983 -24.54202 -23.77293 -22.85732 -22.16927 -21.66796 -20.17170 -19.34655 -18.48377 -17.47885 -17.01040 -16.63471 -16.51475 -16.32214 -15.73520 -14.99636 -14.86731 -14.64266 -14.49858 -13.86801 -13.59372 -13.46068 -13.42819 -13.27182 -12.91919 -12.62146 -12.52920 -12.32471 -11.73157 -11.69271 -11.43369 -11.15501 -11.08857 -10.90913 -10.84303 -10.70140 -10.33182 -10.16953 -10.02640 -9.89609 -9.70197 -9.69781 -9.46345 -8.65308 -8.38404 -7.97728 -6.63277 -5.74115 -3.16962 0.08452 0.46841 1.12849 2.09734 2.18534 2.68611 3.38624 3.42027 3.48134 3.50355 3.57936 3.82111 4.04321 4.10231 4.31226 4.37732 4.53425 4.73321 4.98284 5.18683 5.37604 5.39509 5.46506 5.52793 5.58751 5.70271 5.88916 5.91654 5.93815 6.15735 6.31608 6.43349 6.50702 6.53062 6.68196 6.71991 6.84125 6.98636 7.00440 7.22462 7.43699 7.73410 7.84485 7.87008 8.46734 8.50132 9.25721 9.89123 10.46049 11.34422 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.026636 B = 0.001970 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.961704 B =14211.471787 C =14613.298383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.291 1.291 6 H -0.289 1.289 7 C -0.252 4.252 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.174 3.826 11 C -0.146 4.146 12 C 0.152 3.848 13 N -0.707 5.707 14 C 0.600 3.400 15 O -0.543 6.543 16 C -0.040 4.040 17 N -0.416 5.416 18 C 0.155 3.845 19 N -0.363 5.363 20 C 0.061 3.939 21 C -0.046 4.046 22 Cl -0.036 7.036 23 C -0.117 4.117 24 C -0.043 4.043 25 C 0.065 3.935 26 C -0.139 4.139 27 C 0.149 3.851 28 H 0.253 0.747 29 H 0.089 0.911 30 H 0.021 0.979 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.403 0.597 35 H 0.221 0.779 36 H 0.178 0.822 37 H 0.152 0.848 38 H 0.171 0.829 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.020 0.980 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.280 -23.846 17.366 29.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.203 1.203 5 H -0.218 1.218 6 H -0.216 1.216 7 C -0.381 4.381 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.047 3.953 11 C -0.187 4.187 12 C 0.048 3.952 13 N -0.355 5.355 14 C 0.385 3.615 15 O -0.421 6.421 16 C -0.175 4.175 17 N -0.131 5.131 18 C -0.121 4.121 19 N -0.035 5.035 20 C -0.062 4.062 21 C -0.076 4.076 22 Cl -0.007 7.007 23 C -0.138 4.138 24 C -0.063 4.063 25 C -0.047 4.047 26 C -0.179 4.179 27 C 0.022 3.978 28 H 0.063 0.937 29 H 0.107 0.893 30 H 0.039 0.961 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.237 0.763 35 H 0.237 0.763 36 H 0.195 0.805 37 H 0.170 0.830 38 H 0.189 0.811 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.038 0.962 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.343 -23.318 16.919 28.905 hybrid contribution 0.132 0.216 0.811 0.849 sum -2.211 -23.102 17.730 29.205 Atomic orbital electron populations 1.70046 1.05245 1.25379 1.53898 1.25065 0.95289 0.98439 1.00949 0.86238 0.79351 0.84035 0.77232 1.20271 1.21767 1.21602 1.19212 0.92541 0.84783 1.41590 0.91622 1.44108 1.35922 1.01538 1.49987 1.20752 0.88677 0.98051 0.87778 1.22573 1.00518 0.95103 1.00462 1.21083 0.98818 0.88582 0.86672 1.46092 1.09294 1.43629 1.36527 1.16469 0.85210 0.79274 0.80534 1.90822 1.22252 1.65081 1.63960 1.20747 0.87470 1.05897 1.03384 1.70121 1.25517 1.10269 1.07148 1.25160 0.82226 1.02484 1.02238 1.42916 1.08935 1.28004 1.23615 1.21303 0.91572 0.96792 0.96526 1.20229 0.91326 0.98808 0.97250 1.98411 1.75710 1.64362 1.62263 1.21111 1.01597 0.96455 0.94676 1.20844 0.89834 0.97093 0.98516 1.19353 0.93490 0.97605 0.94248 1.22330 0.96735 0.99763 0.99036 1.20839 0.97988 0.86698 0.92308 0.93674 0.89312 0.96105 0.92664 0.92782 0.89919 0.76286 0.76259 0.80500 0.82992 0.81135 0.92561 0.91772 0.96187 0.92330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 38. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.59 11.20 55.49 0.62 -25.97 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.90 29.59 -169.99 -5.03 16.87 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 7 C -0.25 -6.95 9.58 -15.06 -0.14 -7.10 16 8 H 0.07 1.77 7.89 -52.49 -0.41 1.36 16 9 N -0.59 -15.03 3.00 -172.33 -0.52 -15.55 16 10 C 0.17 4.30 5.30 -3.71 -0.02 4.28 16 11 C -0.15 -3.02 5.66 -26.60 -0.15 -3.17 16 12 C 0.15 2.77 2.41 -67.87 -0.16 2.60 16 13 N -0.71 -11.28 5.07 -55.17 -0.28 -11.56 16 14 C 0.60 9.93 7.74 -13.03 -0.10 9.83 16 15 O -0.54 -10.31 15.41 5.12 0.08 -10.23 16 16 C -0.04 -0.56 7.05 -82.57 -0.58 -1.14 16 17 N -0.42 -5.07 10.90 -10.53 -0.11 -5.19 16 18 C 0.16 1.34 12.73 -89.53 -1.14 0.20 16 19 N -0.36 -3.25 2.94 -62.14 -0.18 -3.43 16 20 C 0.06 0.38 10.70 -16.54 -0.18 0.21 16 21 C -0.05 -0.31 6.28 -39.85 -0.25 -0.56 16 22 Cl -0.04 -0.21 28.93 -51.86 -1.50 -1.71 16 23 C -0.12 -0.89 9.87 -39.43 -0.39 -1.28 16 24 C -0.04 -0.44 9.73 -39.55 -0.38 -0.83 16 25 C 0.06 0.77 6.72 -83.99 -0.56 0.20 16 26 C -0.14 -2.41 5.55 -26.62 -0.15 -2.56 16 27 C 0.15 3.13 6.52 -3.71 -0.02 3.10 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.09 2.45 6.06 -51.93 -0.31 2.13 16 30 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.65 7.57 -51.93 -0.39 1.26 16 34 H 0.40 5.74 8.30 -40.82 -0.34 5.40 16 35 H 0.22 0.84 8.06 -52.49 -0.42 0.42 16 36 H 0.18 0.49 8.06 -52.48 -0.42 0.07 16 37 H 0.15 0.83 8.06 -52.48 -0.42 0.41 16 38 H 0.17 1.84 7.17 -52.48 -0.38 1.46 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 LS Contribution 365.37 15.07 5.51 5.51 Total: -1.00 -33.33 365.37 -10.93 -44.26 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -5.19 Total: 3.27 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: -4.32 Total: 3.73 kcal Atomic # 7 Polarization: -61.22 SS G_CDS: -0.47 Total: -61.69 kcal Atomic # 8 Polarization: -10.31 SS G_CDS: 0.08 Total: -10.23 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.03 Total: 16.87 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.50 Total: -1.71 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.33 -10.93 -44.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002861170.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.892 kcal (2) G-P(sol) polarization free energy of solvation -33.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.30 seconds