Wall clock time and date at job start Wed Apr 1 2020 04:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86800 * 119.99663 * 2 1 4 4 H 1.48506 * 109.46812 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47258 * 299.99482 * 3 2 1 6 6 H 1.48499 * 109.47344 * 60.00017 * 3 2 1 7 7 C 1.38806 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00020 * 163.07870 * 7 2 1 9 9 N 1.36937 * 120.00219 * 343.07619 * 7 2 1 10 10 C 1.46930 * 120.63259 * 331.83653 * 9 7 2 11 11 C 1.53183 * 108.89468 * 233.51494 * 10 9 7 12 12 C 1.53076 * 109.29478 * 305.57480 * 11 10 9 13 13 N 1.46505 * 109.45150 * 181.24130 * 12 11 10 14 14 C 1.34778 * 119.99485 * 84.78885 * 13 12 11 15 15 O 1.21773 * 120.00223 * 0.02562 * 14 13 12 16 16 C 1.46278 * 119.99538 * 179.97438 * 14 13 12 17 17 N 1.34884 * 126.50293 * 0.03317 * 16 14 13 18 18 C 1.30189 * 109.73248 * 179.97438 * 17 16 14 19 19 N 1.36241 * 109.82256 * 359.97438 * 18 17 16 20 20 C 1.36584 * 132.76659 * 180.02562 * 19 18 17 21 21 C 1.35128 * 120.57931 * 179.97438 * 20 19 18 22 22 Cl 1.73596 * 119.78926 * 180.02562 * 21 20 19 23 23 C 1.40466 * 120.41298 * 0.02562 * 21 20 19 24 24 C 1.36316 * 119.55354 * 0.02562 * 23 21 20 25 25 C 1.37245 * 107.19317 * 359.75716 * 19 18 17 26 26 C 1.53033 * 109.65646 * 61.15632 * 12 11 10 27 27 C 1.46925 * 120.63413 * 151.81378 * 9 7 2 28 28 H 0.96995 * 120.00379 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.58138 * 353.37071 * 10 9 7 30 30 H 1.08998 * 109.58912 * 113.65314 * 10 9 7 31 31 H 1.09005 * 109.50135 * 65.38839 * 11 10 9 32 32 H 1.09004 * 109.49749 * 185.48051 * 11 10 9 33 33 H 1.08990 * 109.33376 * 301.13470 * 12 11 10 34 34 H 0.96997 * 120.00106 * 264.79224 * 13 12 11 35 35 H 1.08001 * 125.08629 * 180.02562 * 18 17 16 36 36 H 1.08003 * 119.70306 * 359.97257 * 20 19 18 37 37 H 1.08003 * 120.22255 * 180.02562 * 23 21 20 38 38 H 1.08004 * 120.38690 * 179.97438 * 24 23 21 39 39 H 1.09003 * 109.49897 * 178.74799 * 26 12 11 40 40 H 1.09004 * 109.50093 * 58.65268 * 26 12 11 41 41 H 1.09001 * 109.58688 * 246.20238 * 27 9 7 42 42 H 1.08996 * 109.58570 * 6.47946 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8914 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0552 -1.2224 -0.2717 9 7 1.3702 -2.3622 0.3463 10 6 0.2263 -2.3400 1.2681 11 6 0.4942 -3.3197 2.4148 12 6 0.8122 -4.7007 1.8363 13 7 1.0399 -5.6476 2.9308 14 6 -0.0050 -6.2695 3.5121 15 8 -1.1382 -6.0449 3.1272 16 6 0.2224 -7.2153 4.6046 17 7 1.4150 -7.5605 5.1318 18 6 1.2388 -8.4262 6.0881 19 7 -0.0899 -8.6901 6.2333 20 6 -0.7861 -9.5082 7.0769 21 6 -2.1336 -9.5820 7.0061 22 17 -2.9979 -10.6281 8.0888 23 6 -2.8390 -8.8177 6.0621 24 6 -2.1552 -7.9984 5.2140 25 6 -0.7582 -7.9294 5.3069 26 6 2.0675 -4.6173 0.9650 27 6 1.8138 -3.6528 -0.1979 28 1 -0.4850 0.8400 -0.0004 29 1 0.0995 -1.3342 1.6688 30 1 -0.6774 -2.6380 0.7364 31 1 1.3429 -2.9691 3.0021 32 1 -0.3879 -3.3839 3.0520 33 1 -0.0281 -5.0406 1.2310 34 1 1.9426 -5.8267 3.2372 35 1 2.0278 -8.8682 6.6785 36 1 -0.2550 -10.1011 7.8067 37 1 -3.9160 -8.8789 6.0085 38 1 -2.6840 -7.4051 4.4827 39 1 2.3043 -5.6062 0.5724 40 1 2.9025 -4.2536 1.5638 41 1 1.0401 -4.0605 -0.8485 42 1 2.7331 -3.5130 -0.7666 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001002861170.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:32 Heat of formation + Delta-G solvation = 47.834098 kcal Electronic energy + Delta-G solvation = -27293.472721 eV Core-core repulsion = 23300.317248 eV Total energy + Delta-G solvation = -3993.155473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.01921 -40.78600 -39.07224 -38.76471 -37.41354 -35.98749 -34.61977 -33.87602 -31.92589 -31.78917 -31.30326 -29.51594 -27.02654 -25.22505 -25.02833 -23.91179 -23.53869 -23.24730 -21.39621 -20.93119 -19.42711 -18.77670 -18.15192 -17.64839 -17.28816 -17.24969 -17.02299 -16.65118 -15.85971 -15.75979 -15.57425 -15.40289 -15.35109 -14.90738 -14.62385 -14.33501 -14.07848 -14.01967 -13.91198 -13.19627 -13.19422 -13.03175 -12.67108 -12.58896 -12.39373 -12.19490 -12.13022 -12.02640 -11.89389 -11.85888 -11.68915 -11.54063 -11.42424 -11.03778 -10.58489 -10.34779 -10.02375 -8.73421 -8.70296 -7.86742 -5.33153 -0.58725 -0.23831 0.58495 1.20224 1.47173 1.48861 1.52257 1.59902 2.01911 2.22914 2.49050 2.52062 3.24464 3.26138 3.29709 3.52449 3.62751 3.66038 3.72186 3.86403 4.07283 4.09311 4.17095 4.33442 4.46992 4.57740 4.66539 4.76478 4.79238 4.85663 4.89791 5.01958 5.07053 5.10890 5.13699 5.21706 5.31359 5.45927 5.54985 5.64880 5.69910 5.90168 6.36954 6.39426 6.70417 7.13834 7.24292 7.84504 8.37825 9.20581 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.026636 B = 0.001970 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.961704 B =14211.471787 C =14613.298383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.056 4.056 3 Si 0.970 3.030 4 H -0.263 1.263 5 H -0.293 1.293 6 H -0.292 1.292 7 C -0.260 4.260 8 H 0.073 0.927 9 N -0.609 5.609 10 C 0.184 3.816 11 C -0.130 4.130 12 C 0.163 3.837 13 N -0.700 5.700 14 C 0.596 3.404 15 O -0.581 6.581 16 C -0.092 4.092 17 N -0.440 5.440 18 C 0.175 3.825 19 N -0.364 5.364 20 C 0.084 3.916 21 C -0.063 4.063 22 Cl -0.020 7.020 23 C -0.085 4.085 24 C -0.086 4.086 25 C 0.067 3.933 26 C -0.122 4.122 27 C 0.143 3.857 28 H 0.249 0.751 29 H 0.056 0.944 30 H -0.008 1.008 31 H 0.057 0.943 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.413 0.587 35 H 0.271 0.729 36 H 0.223 0.777 37 H 0.172 0.828 38 H 0.152 0.848 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.014 0.986 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.431 -26.710 19.990 33.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.251 4.251 3 Si 0.798 3.202 4 H -0.187 1.187 5 H -0.220 1.220 6 H -0.219 1.219 7 C -0.390 4.390 8 H 0.091 0.909 9 N -0.333 5.333 10 C 0.057 3.943 11 C -0.170 4.170 12 C 0.059 3.941 13 N -0.349 5.349 14 C 0.385 3.615 15 O -0.462 6.462 16 C -0.224 4.224 17 N -0.154 5.154 18 C -0.102 4.102 19 N -0.035 5.035 20 C -0.039 4.039 21 C -0.093 4.093 22 Cl 0.009 6.991 23 C -0.106 4.106 24 C -0.106 4.106 25 C -0.047 4.047 26 C -0.161 4.161 27 C 0.017 3.983 28 H 0.058 0.942 29 H 0.074 0.926 30 H 0.010 0.990 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.250 0.750 35 H 0.287 0.713 36 H 0.239 0.761 37 H 0.189 0.811 38 H 0.170 0.830 39 H 0.107 0.893 40 H 0.091 0.909 41 H 0.032 0.968 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.447 -26.209 19.536 32.692 hybrid contribution -0.552 0.884 0.151 1.054 sum -1.000 -25.325 19.687 32.093 Atomic orbital electron populations 1.70213 1.06865 1.25796 1.55553 1.25893 0.96059 1.01819 1.01335 0.85169 0.78761 0.79648 0.76634 1.18665 1.21967 1.21905 1.19595 0.93000 0.85773 1.40600 0.90897 1.44351 1.35722 1.02688 1.50534 1.20455 0.87941 0.97194 0.88669 1.22315 1.00192 0.95829 0.98648 1.20718 0.98729 0.87460 0.87194 1.45829 1.09920 1.43152 1.36012 1.16888 0.84530 0.79283 0.80838 1.90788 1.23587 1.66472 1.65326 1.20228 0.89149 1.08164 1.04827 1.70014 1.25067 1.11789 1.08576 1.26163 0.82785 1.00484 1.00777 1.43106 1.09135 1.27919 1.23370 1.22048 0.91672 0.94855 0.95307 1.20294 0.91841 0.99427 0.97693 1.98426 1.75432 1.63706 1.61537 1.21395 1.02611 0.93901 0.92729 1.20709 0.89693 0.99681 1.00517 1.19419 0.93889 0.97161 0.94217 1.22135 0.96127 1.00419 0.97451 1.21030 0.98013 0.85511 0.93741 0.94165 0.92609 0.98954 0.92424 0.93553 0.91998 0.75038 0.71311 0.76086 0.81057 0.83018 0.89265 0.90930 0.96771 0.91269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.64 11.20 21.65 0.24 -57.39 16 2 C -0.06 -3.22 4.92 84.86 0.42 -2.80 16 3 Si 0.97 45.84 29.59 68.60 2.03 47.87 16 4 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 5 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 6 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 7 C -0.26 -14.53 9.58 84.03 0.81 -13.72 16 8 H 0.07 3.91 7.89 -2.91 -0.02 3.88 16 9 N -0.61 -31.69 3.00 -699.11 -2.09 -33.79 16 10 C 0.18 9.63 5.30 86.36 0.46 10.09 16 11 C -0.13 -5.59 5.66 30.68 0.17 -5.41 16 12 C 0.16 6.10 2.41 45.03 0.11 6.21 16 13 N -0.70 -22.66 5.07 -446.66 -2.27 -24.93 16 14 C 0.60 20.63 7.74 86.33 0.67 21.30 16 15 O -0.58 -23.66 15.41 -4.58 -0.07 -23.73 16 16 C -0.09 -2.60 7.05 41.24 0.29 -2.31 16 17 N -0.44 -10.10 10.90 -187.23 -2.04 -12.14 16 18 C 0.18 2.42 12.73 179.97 2.29 4.71 16 19 N -0.36 -5.45 2.94 -350.52 -1.03 -6.48 16 20 C 0.08 0.70 10.70 83.24 0.89 1.59 16 21 C -0.06 -0.65 6.28 22.10 0.14 -0.51 16 22 Cl -0.02 -0.16 28.93 -2.72 -0.08 -0.24 16 23 C -0.08 -1.16 9.87 22.36 0.22 -0.94 16 24 C -0.09 -1.80 9.73 22.29 0.22 -1.58 16 25 C 0.07 1.55 6.72 39.24 0.26 1.82 16 26 C -0.12 -4.12 5.55 30.67 0.17 -3.95 16 27 C 0.14 6.00 6.52 86.36 0.56 6.57 16 28 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 29 H 0.06 3.27 6.06 -2.38 -0.01 3.25 16 30 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 31 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 32 H 0.05 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.06 2.59 7.57 -2.39 -0.02 2.57 16 34 H 0.41 11.58 8.30 -92.71 -0.77 10.81 16 35 H 0.27 0.54 8.06 -2.91 -0.02 0.51 16 36 H 0.22 -0.16 8.06 -2.91 -0.02 -0.18 16 37 H 0.17 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.15 3.66 7.17 -2.91 -0.02 3.64 16 39 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 40 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 41 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.07 2.73 7.93 -2.39 -0.02 2.72 16 Total: -1.00 -77.44 365.37 2.67 -74.77 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 0.30 Total: 15.00 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: 7.67 Total: 21.06 kcal Atomic # 7 Polarization: -127.54 SS G_CDS: -7.19 Total: -134.73 kcal Atomic # 8 Polarization: -23.66 SS G_CDS: -0.07 Total: -23.73 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal Total: -77.44 2.67 -74.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002861170.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.604 kcal (2) G-P(sol) polarization free energy of solvation -77.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds