Wall clock time and date at job start Wed Apr 1 2020 04:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00275 * 2 1 4 4 H 1.48507 * 109.47000 * 270.00526 * 3 2 1 5 5 H 1.48498 * 109.47133 * 30.00064 * 3 2 1 6 6 H 1.48498 * 109.47464 * 150.00213 * 3 2 1 7 7 C 1.38807 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00497 * 196.80465 * 7 2 1 9 9 N 1.36943 * 120.00022 * 16.80181 * 7 2 1 10 10 C 1.46927 * 120.63392 * 208.16961 * 9 7 2 11 11 C 1.53193 * 108.77245 * 233.60730 * 10 9 7 12 12 C 1.53037 * 109.31426 * 305.36170 * 11 10 9 13 13 C 1.53039 * 109.53863 * 61.36794 * 12 11 10 14 14 H 1.09000 * 109.49818 * 58.61827 * 13 12 11 15 15 N 1.46497 * 109.50206 * 178.68374 * 13 12 11 16 16 C 1.34774 * 120.00188 * 204.93717 * 15 13 12 17 17 O 1.21719 * 120.00226 * 0.27224 * 16 15 13 18 18 C 1.46577 * 119.99854 * 179.97438 * 16 15 13 19 19 C 1.40540 * 126.58337 * 354.37642 * 18 16 15 20 20 N 1.30743 * 108.74306 * 179.82160 * 19 18 16 21 21 N 1.40013 * 109.60271 * 0.45138 * 20 19 18 22 22 C 1.36267 * 132.01294 * 179.71644 * 21 20 19 23 23 C 1.35184 * 120.73379 * 179.97438 * 22 21 20 24 24 C 1.40151 * 120.32825 * 0.02562 * 23 22 21 25 25 C 1.36542 * 119.40025 * 359.97438 * 24 23 22 26 26 Cl 1.73599 * 120.38583 * 180.02562 * 25 24 23 27 27 C 1.36560 * 107.90487 * 359.71308 * 21 20 19 28 28 C 1.46933 * 120.60039 * 28.18569 * 9 7 2 29 29 H 0.97005 * 119.99844 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.58720 * 113.82152 * 10 9 7 31 31 H 1.08999 * 109.69839 * 353.46330 * 10 9 7 32 32 H 1.09004 * 109.49244 * 185.41360 * 11 10 9 33 33 H 1.08994 * 109.52254 * 65.33503 * 11 10 9 34 34 H 1.09006 * 109.46413 * 301.34925 * 12 11 10 35 35 H 1.09000 * 109.45977 * 181.38655 * 12 11 10 36 36 H 0.96998 * 119.99741 * 24.93170 * 15 13 12 37 37 H 1.08007 * 125.62419 * 359.96621 * 19 18 16 38 38 H 1.08003 * 119.63165 * 0.02562 * 22 21 20 39 39 H 1.07998 * 119.83465 * 180.02562 * 23 22 21 40 40 H 1.08003 * 120.29563 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.61872 * 6.62897 * 28 9 7 42 42 H 1.09001 * 109.56701 * 246.19275 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0557 -1.2222 0.2698 9 7 1.3695 -2.3626 -0.3439 10 6 1.8143 -3.6527 0.2006 11 6 2.0661 -4.6180 -0.9621 12 6 0.8092 -4.7023 -1.8312 13 6 0.4935 -3.3212 -2.4098 14 1 1.3419 -2.9702 -2.9973 15 7 -0.6915 -3.4093 -3.2668 16 6 -0.8776 -2.5107 -4.2538 17 8 -0.0587 -1.6289 -4.4365 18 6 -2.0630 -2.5992 -5.1115 19 6 -3.0301 -3.6188 -5.1012 20 7 -3.9357 -3.3480 -6.0044 21 7 -3.6072 -2.1528 -6.6554 22 6 -4.2196 -1.4620 -7.6577 23 6 -3.6930 -0.3071 -8.1228 24 6 -2.5043 0.1983 -7.5789 25 6 -1.8827 -0.4863 -6.5742 26 17 -0.4095 0.1167 -5.8814 27 6 -2.4480 -1.6817 -6.1084 28 6 0.2242 -2.3406 -1.2641 29 1 -0.4850 0.8401 0.0004 30 1 1.0418 -4.0600 0.8528 31 1 2.7353 -3.5146 0.7669 32 1 2.3037 -5.6066 -0.5691 33 1 2.9001 -4.2551 -1.5627 34 1 -0.0300 -5.0422 -1.2241 35 1 0.9773 -5.4074 -2.6453 36 1 -1.3421 -4.1144 -3.1238 37 1 -3.0270 -4.4823 -4.4524 38 1 -5.1364 -1.8410 -8.0848 39 1 -4.1907 0.2288 -8.9174 40 1 -2.0838 1.1208 -7.9511 41 1 0.0968 -1.3354 -1.6659 42 1 -0.6782 -2.6403 -0.7311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007874654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:01 Heat of formation + Delta-G solvation = 105.097266 kcal Electronic energy + Delta-G solvation = -28473.478977 eV Core-core repulsion = 24482.806621 eV Total energy + Delta-G solvation = -3990.672356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.33214 -39.07603 -37.64982 -37.04952 -36.20448 -33.94053 -32.84476 -32.52975 -31.07253 -30.01758 -29.50212 -28.05679 -25.18813 -24.11435 -23.83133 -22.50623 -22.07690 -21.49408 -19.81291 -19.26829 -18.02596 -17.17061 -16.66230 -16.50083 -16.06542 -16.02752 -15.42507 -15.04234 -14.74888 -14.04006 -13.91270 -13.67463 -13.60607 -13.30966 -12.95676 -12.89916 -12.72545 -12.43477 -12.29875 -12.21706 -11.86217 -11.56774 -11.39980 -10.94718 -10.69816 -10.63491 -10.52025 -10.39081 -10.17051 -10.03135 -9.87224 -9.79060 -9.72970 -9.41699 -8.69826 -8.37526 -8.32948 -7.75180 -6.57132 -5.68169 -3.11932 0.29274 0.70153 1.71931 2.12106 2.36754 2.88293 3.46640 3.53409 3.54004 3.64151 3.93184 4.09046 4.17696 4.39454 4.46839 4.60088 4.91021 5.06255 5.14733 5.36499 5.44443 5.47884 5.51473 5.62484 5.68184 5.72594 5.83043 5.87492 6.13549 6.19557 6.23321 6.42448 6.47248 6.49683 6.62161 6.79192 6.86150 7.03200 7.13474 7.19132 7.42472 7.83273 7.91864 8.15189 8.56201 8.92682 9.30868 9.94761 10.49820 11.39435 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.003876 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.528213 B = 7223.096547 C = 8843.407139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.008 3.992 3 Si 0.899 3.101 4 H -0.286 1.286 5 H -0.292 1.292 6 H -0.279 1.279 7 C -0.256 4.256 8 H 0.065 0.935 9 N -0.589 5.589 10 C 0.143 3.857 11 C -0.131 4.131 12 C -0.116 4.116 13 C 0.122 3.878 14 H 0.082 0.918 15 N -0.718 5.718 16 C 0.582 3.418 17 O -0.519 6.519 18 C -0.279 4.279 19 C 0.114 3.886 20 N -0.314 5.314 21 N -0.263 5.263 22 C 0.106 3.894 23 C -0.150 4.150 24 C -0.082 4.082 25 C -0.032 4.032 26 Cl 0.028 6.972 27 C 0.153 3.847 28 C 0.168 3.832 29 H 0.253 0.747 30 H 0.017 0.983 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.060 0.940 34 H 0.058 0.942 35 H 0.050 0.950 36 H 0.386 0.614 37 H 0.201 0.799 38 H 0.175 0.825 39 H 0.164 0.836 40 H 0.152 0.848 41 H 0.095 0.905 42 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.016 -5.997 -16.926 20.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.191 4.191 3 Si 0.729 3.271 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.083 0.917 9 N -0.312 5.312 10 C 0.016 3.984 11 C -0.170 4.170 12 C -0.154 4.154 13 C 0.017 3.983 14 H 0.100 0.900 15 N -0.369 5.369 16 C 0.369 3.631 17 O -0.395 6.395 18 C -0.294 4.294 19 C -0.065 4.065 20 N -0.135 5.135 21 N -0.028 5.028 22 C -0.020 4.020 23 C -0.172 4.172 24 C -0.106 4.106 25 C -0.061 4.061 26 Cl 0.057 6.943 27 C 0.031 3.969 28 C 0.041 3.959 29 H 0.063 0.937 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.219 0.781 37 H 0.217 0.783 38 H 0.192 0.808 39 H 0.181 0.819 40 H 0.170 0.830 41 H 0.113 0.887 42 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -9.489 -5.670 -17.416 20.627 hybrid contribution 0.659 0.757 0.468 1.108 sum -8.830 -4.912 -16.947 19.731 Atomic orbital electron populations 1.70017 1.05275 1.25407 1.53446 1.25008 0.95214 0.98327 1.00522 0.86342 0.79095 0.83875 0.77776 1.21327 1.21825 1.20443 1.19142 0.92480 0.84805 1.42106 0.91716 1.43973 1.35970 1.01688 1.49536 1.20942 0.97643 0.86953 0.92837 1.21996 0.97045 0.99212 0.98792 1.21675 0.98782 0.96273 0.98674 1.21891 0.87005 0.96574 0.92822 0.90000 1.45835 1.26111 1.31517 1.33407 1.16854 0.84663 0.81963 0.79645 1.91035 1.45022 1.32928 1.70564 1.20037 1.03538 0.99352 1.06500 1.24093 0.89898 0.98014 0.94515 1.77570 1.24403 0.97351 1.14181 1.46025 1.16031 1.16782 1.23953 1.21601 0.99007 0.92576 0.88845 1.20835 0.97376 0.95877 1.03070 1.21297 0.94730 1.00278 0.94331 1.20348 0.94239 0.93813 0.97744 1.98536 1.28352 1.85699 1.81687 1.18949 0.88283 0.94385 0.95233 1.21097 0.88491 0.98976 0.87329 0.93734 0.96506 0.92750 0.92771 0.92167 0.92360 0.93155 0.78107 0.78271 0.80795 0.81859 0.82984 0.88670 0.96674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 11.19 55.49 0.62 -26.59 16 2 C 0.01 0.25 4.92 -17.43 -0.09 0.16 16 3 Si 0.90 22.86 29.59 -169.99 -5.03 17.83 16 4 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 5 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.26 -7.29 9.59 -15.06 -0.14 -7.44 16 8 H 0.07 1.81 7.88 -52.49 -0.41 1.39 16 9 N -0.59 -15.20 2.99 -172.31 -0.52 -15.71 16 10 C 0.14 3.01 6.51 -3.71 -0.02 2.99 16 11 C -0.13 -2.25 6.08 -26.61 -0.16 -2.41 16 12 C -0.12 -1.89 5.35 -26.69 -0.14 -2.03 16 13 C 0.12 2.42 2.61 -67.81 -0.18 2.24 16 14 H 0.08 1.84 7.57 -51.93 -0.39 1.45 16 15 N -0.72 -12.08 5.07 -55.02 -0.28 -12.36 16 16 C 0.58 10.78 7.75 -12.90 -0.10 10.68 16 17 O -0.52 -11.37 11.75 5.17 0.06 -11.31 16 18 C -0.28 -4.40 6.16 -104.68 -0.65 -5.05 16 19 C 0.11 1.44 11.44 -17.15 -0.20 1.25 16 20 N -0.31 -4.13 12.57 30.75 0.39 -3.74 16 21 N -0.26 -3.34 3.86 -10.52 -0.04 -3.38 16 22 C 0.11 0.90 11.17 -16.67 -0.19 0.72 16 23 C -0.15 -1.05 9.98 -39.95 -0.40 -1.45 16 24 C -0.08 -0.80 9.87 -39.48 -0.39 -1.19 16 25 C -0.03 -0.45 6.33 -39.46 -0.25 -0.70 16 26 Cl 0.03 0.47 24.34 -51.86 -1.26 -0.79 16 27 C 0.15 2.30 6.74 -84.04 -0.57 1.73 16 28 C 0.17 4.16 4.88 -3.70 -0.02 4.14 16 29 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 30 H 0.02 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 1.12 7.94 -51.93 -0.41 0.71 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.39 5.07 7.55 -40.82 -0.31 4.76 16 37 H 0.20 1.71 7.49 -52.48 -0.39 1.31 16 38 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 39 H 0.16 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.15 1.09 8.06 -52.48 -0.42 0.67 16 41 H 0.10 2.78 6.06 -51.93 -0.31 2.47 16 42 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 357.90 15.07 5.39 5.39 Total: -1.00 -36.07 357.90 -9.33 -45.39 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -5.18 Total: 1.63 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -3.49 Total: 3.64 kcal Atomic # 7 Polarization: -61.95 SS G_CDS: 0.17 Total: -61.78 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.06 Total: -11.31 kcal Atomic # 14 Polarization: 22.86 SS G_CDS: -5.03 Total: 17.83 kcal Atomic # 17 Polarization: 0.47 SS G_CDS: -1.26 Total: -0.79 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.07 -9.33 -45.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007874654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.488 kcal (2) G-P(sol) polarization free energy of solvation -36.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds