Wall clock time and date at job start Wed Apr 1 2020 04:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 120.00275 * 2 1 4 4 H 1.48507 * 109.47000 * 270.00526 * 3 2 1 5 5 H 1.48498 * 109.47133 * 30.00064 * 3 2 1 6 6 H 1.48498 * 109.47464 * 150.00213 * 3 2 1 7 7 C 1.38807 * 120.00214 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00497 * 196.80465 * 7 2 1 9 9 N 1.36943 * 120.00022 * 16.80181 * 7 2 1 10 10 C 1.46927 * 120.63392 * 208.16961 * 9 7 2 11 11 C 1.53193 * 108.77245 * 233.60730 * 10 9 7 12 12 C 1.53037 * 109.31426 * 305.36170 * 11 10 9 13 13 C 1.53039 * 109.53863 * 61.36794 * 12 11 10 14 14 H 1.09000 * 109.49818 * 58.61827 * 13 12 11 15 15 N 1.46497 * 109.50206 * 178.68374 * 13 12 11 16 16 C 1.34774 * 120.00188 * 204.93717 * 15 13 12 17 17 O 1.21719 * 120.00226 * 0.27224 * 16 15 13 18 18 C 1.46577 * 119.99854 * 179.97438 * 16 15 13 19 19 C 1.40540 * 126.58337 * 354.37642 * 18 16 15 20 20 N 1.30743 * 108.74306 * 179.82160 * 19 18 16 21 21 N 1.40013 * 109.60271 * 0.45138 * 20 19 18 22 22 C 1.36267 * 132.01294 * 179.71644 * 21 20 19 23 23 C 1.35184 * 120.73379 * 179.97438 * 22 21 20 24 24 C 1.40151 * 120.32825 * 0.02562 * 23 22 21 25 25 C 1.36542 * 119.40025 * 359.97438 * 24 23 22 26 26 Cl 1.73599 * 120.38583 * 180.02562 * 25 24 23 27 27 C 1.36560 * 107.90487 * 359.71308 * 21 20 19 28 28 C 1.46933 * 120.60039 * 28.18569 * 9 7 2 29 29 H 0.97005 * 119.99844 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.58720 * 113.82152 * 10 9 7 31 31 H 1.08999 * 109.69839 * 353.46330 * 10 9 7 32 32 H 1.09004 * 109.49244 * 185.41360 * 11 10 9 33 33 H 1.08994 * 109.52254 * 65.33503 * 11 10 9 34 34 H 1.09006 * 109.46413 * 301.34925 * 12 11 10 35 35 H 1.09000 * 109.45977 * 181.38655 * 12 11 10 36 36 H 0.96998 * 119.99741 * 24.93170 * 15 13 12 37 37 H 1.08007 * 125.62419 * 359.96621 * 19 18 16 38 38 H 1.08003 * 119.63165 * 0.02562 * 22 21 20 39 39 H 1.07998 * 119.83465 * 180.02562 * 23 22 21 40 40 H 1.08003 * 120.29563 * 179.97438 * 24 23 22 41 41 H 1.08998 * 109.61872 * 6.62897 * 28 9 7 42 42 H 1.09001 * 109.56701 * 246.19275 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0557 -1.2222 0.2698 9 7 1.3695 -2.3626 -0.3439 10 6 1.8143 -3.6527 0.2006 11 6 2.0661 -4.6180 -0.9621 12 6 0.8092 -4.7023 -1.8312 13 6 0.4935 -3.3212 -2.4098 14 1 1.3419 -2.9702 -2.9973 15 7 -0.6915 -3.4093 -3.2668 16 6 -0.8776 -2.5107 -4.2538 17 8 -0.0587 -1.6289 -4.4365 18 6 -2.0630 -2.5992 -5.1115 19 6 -3.0301 -3.6188 -5.1012 20 7 -3.9357 -3.3480 -6.0044 21 7 -3.6072 -2.1528 -6.6554 22 6 -4.2196 -1.4620 -7.6577 23 6 -3.6930 -0.3071 -8.1228 24 6 -2.5043 0.1983 -7.5789 25 6 -1.8827 -0.4863 -6.5742 26 17 -0.4095 0.1167 -5.8814 27 6 -2.4480 -1.6817 -6.1084 28 6 0.2242 -2.3406 -1.2641 29 1 -0.4850 0.8401 0.0004 30 1 1.0418 -4.0600 0.8528 31 1 2.7353 -3.5146 0.7669 32 1 2.3037 -5.6066 -0.5691 33 1 2.9001 -4.2551 -1.5627 34 1 -0.0300 -5.0422 -1.2241 35 1 0.9773 -5.4074 -2.6453 36 1 -1.3421 -4.1144 -3.1238 37 1 -3.0270 -4.4823 -4.4524 38 1 -5.1364 -1.8410 -8.0848 39 1 -4.1907 0.2288 -8.9174 40 1 -2.0838 1.1208 -7.9511 41 1 0.0968 -1.3354 -1.6659 42 1 -0.6782 -2.6403 -0.7311 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007874654.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:00 Heat of formation + Delta-G solvation = 80.044716 kcal Electronic energy + Delta-G solvation = -28474.565337 eV Core-core repulsion = 24482.806621 eV Total energy + Delta-G solvation = -3991.758716 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.26346 -40.52051 -38.81169 -38.42969 -37.26651 -35.65919 -34.37269 -33.73558 -31.97736 -31.87062 -30.90179 -29.29787 -27.21478 -25.02248 -24.95074 -23.89275 -23.44936 -22.96998 -21.23077 -20.80270 -19.12215 -18.69816 -18.03608 -17.50265 -17.09730 -17.05519 -16.93156 -16.43968 -16.03180 -15.80020 -15.52032 -15.19444 -14.93723 -14.61619 -14.40230 -14.11883 -13.92057 -13.78079 -13.73198 -13.46816 -13.22481 -12.92382 -12.71531 -12.59326 -12.46885 -12.36213 -12.17001 -12.02919 -11.72496 -11.63734 -11.40947 -11.21071 -11.09377 -10.60197 -10.55029 -10.08444 -9.89755 -8.74258 -8.64536 -7.87308 -5.33736 -0.56937 -0.17182 0.81865 1.07646 1.38516 1.41392 1.44161 1.49877 2.05023 2.34740 2.50498 2.64737 3.16133 3.28430 3.29280 3.67457 3.75291 3.80282 3.98271 4.07786 4.17335 4.19760 4.29359 4.38324 4.53888 4.56604 4.70045 4.73039 4.85813 4.91607 4.97673 5.10845 5.11910 5.20890 5.24186 5.30372 5.40093 5.56246 5.61305 5.63108 5.65124 5.88365 6.25645 6.38484 6.85474 7.13857 7.59434 7.87776 8.36485 9.16724 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.012105 B = 0.003876 C = 0.003165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2312.528213 B = 7223.096547 C = 8843.407139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.047 4.047 3 Si 0.957 3.043 4 H -0.296 1.296 5 H -0.291 1.291 6 H -0.261 1.261 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.610 5.610 10 C 0.136 3.864 11 C -0.121 4.121 12 C -0.106 4.106 13 C 0.139 3.861 14 H 0.049 0.951 15 N -0.709 5.709 16 C 0.575 3.425 17 O -0.563 6.563 18 C -0.327 4.327 19 C 0.130 3.870 20 N -0.327 5.327 21 N -0.265 5.265 22 C 0.106 3.894 23 C -0.133 4.133 24 C -0.050 4.050 25 C -0.082 4.082 26 Cl -0.020 7.020 27 C 0.140 3.860 28 C 0.182 3.818 29 H 0.245 0.755 30 H 0.021 0.979 31 H 0.054 0.946 32 H 0.097 0.903 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.406 0.594 37 H 0.234 0.766 38 H 0.217 0.783 39 H 0.220 0.780 40 H 0.178 0.822 41 H 0.042 0.958 42 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.714 -7.510 -19.184 23.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.243 4.243 3 Si 0.786 3.214 4 H -0.224 1.224 5 H -0.217 1.217 6 H -0.185 1.185 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.334 5.334 10 C 0.011 3.989 11 C -0.160 4.160 12 C -0.144 4.144 13 C 0.033 3.967 14 H 0.067 0.933 15 N -0.361 5.361 16 C 0.364 3.636 17 O -0.442 6.442 18 C -0.341 4.341 19 C -0.050 4.050 20 N -0.148 5.148 21 N -0.029 5.029 22 C -0.020 4.020 23 C -0.154 4.154 24 C -0.074 4.074 25 C -0.111 4.111 26 Cl 0.009 6.991 27 C 0.018 3.982 28 C 0.055 3.945 29 H 0.055 0.945 30 H 0.039 0.961 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.242 0.758 37 H 0.250 0.750 38 H 0.233 0.767 39 H 0.237 0.763 40 H 0.196 0.804 41 H 0.061 0.939 42 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges -11.205 -7.250 -19.671 23.771 hybrid contribution 1.027 1.294 0.983 1.922 sum -10.177 -5.956 -18.688 22.097 Atomic orbital electron populations 1.70177 1.06656 1.25409 1.55241 1.25739 0.95960 1.01370 1.01199 0.85411 0.78699 0.80190 0.77131 1.22350 1.21709 1.18477 1.19496 0.92788 0.86233 1.40895 0.91540 1.44265 1.35932 1.02768 1.50448 1.21170 0.97477 0.85704 0.94583 1.21894 0.97054 0.99992 0.97095 1.21637 0.98955 0.94146 0.99689 1.21380 0.86969 0.97580 0.90791 0.93277 1.45609 1.25827 1.32000 1.32620 1.17384 0.85142 0.81229 0.79858 1.91018 1.46745 1.34603 1.71836 1.19825 1.04099 1.01972 1.08241 1.24538 0.88341 0.97916 0.94192 1.77510 1.24670 0.97871 1.14704 1.46355 1.15402 1.16732 1.24409 1.22661 0.99826 0.92422 0.87048 1.21520 0.95678 0.95113 1.03086 1.21865 0.94405 0.99871 0.91279 1.20517 0.94352 0.95422 1.00793 1.98509 1.31427 1.86189 1.82936 1.19127 0.89162 0.94633 0.95292 1.20772 0.87705 0.97568 0.88425 0.94549 0.96107 0.92753 0.88494 0.93160 0.90742 0.89668 0.75764 0.75025 0.76653 0.76346 0.80419 0.93943 0.98646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -59.50 11.19 21.65 0.24 -59.26 16 2 C -0.05 -2.84 4.92 84.86 0.42 -2.43 16 3 Si 0.96 48.97 29.59 68.60 2.03 51.00 16 4 H -0.30 -15.47 7.11 99.48 0.71 -14.76 16 5 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 6 H -0.26 -12.40 7.11 99.48 0.71 -11.69 16 7 C -0.26 -15.60 9.59 84.03 0.81 -14.80 16 8 H 0.07 3.81 7.88 -2.91 -0.02 3.79 16 9 N -0.61 -32.60 2.99 -699.06 -2.09 -34.69 16 10 C 0.14 5.68 6.51 86.36 0.56 6.24 16 11 C -0.12 -3.91 6.08 30.67 0.19 -3.73 16 12 C -0.11 -3.26 5.35 30.62 0.16 -3.10 16 13 C 0.14 5.67 2.61 45.07 0.12 5.79 16 14 H 0.05 2.33 7.57 -2.39 -0.02 2.32 16 15 N -0.71 -24.56 5.07 -446.21 -2.26 -26.82 16 16 C 0.58 22.61 7.75 86.42 0.67 23.28 16 17 O -0.56 -26.81 11.75 -4.41 -0.05 -26.86 16 18 C -0.33 -10.61 6.16 -19.90 -0.12 -10.74 16 19 C 0.13 3.17 11.44 85.42 0.98 4.15 16 20 N -0.33 -8.04 12.57 -56.62 -0.71 -8.75 16 21 N -0.26 -6.24 3.86 -187.19 -0.72 -6.96 16 22 C 0.11 1.37 11.17 83.30 0.93 2.30 16 23 C -0.13 -1.22 9.98 22.03 0.22 -1.00 16 24 C -0.05 -0.85 9.87 22.34 0.22 -0.63 16 25 C -0.08 -2.34 6.33 22.35 0.14 -2.19 16 26 Cl -0.02 -0.73 24.34 -2.72 -0.07 -0.80 16 27 C 0.14 4.24 6.74 39.52 0.27 4.51 16 28 C 0.18 9.53 4.88 86.36 0.42 9.95 16 29 H 0.25 15.38 8.31 -92.70 -0.77 14.61 16 30 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 2.23 7.94 -2.39 -0.02 2.21 16 32 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 35 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.41 10.46 7.55 -92.71 -0.70 9.76 16 37 H 0.23 3.55 7.49 -2.91 -0.02 3.53 16 38 H 0.22 0.93 8.06 -2.91 -0.02 0.91 16 39 H 0.22 -0.35 8.06 -2.91 -0.02 -0.37 16 40 H 0.18 2.02 8.06 -2.91 -0.02 2.00 16 41 H 0.04 2.67 6.06 -2.39 -0.01 2.65 16 42 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 Total: -1.00 -88.45 357.90 2.71 -85.74 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.37 Total: 9.79 kcal Atomic # 6 Polarization: 11.63 SS G_CDS: 5.98 Total: 17.61 kcal Atomic # 7 Polarization: -130.94 SS G_CDS: -5.55 Total: -136.49 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.05 Total: -26.86 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 2.03 Total: 51.00 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.07 Total: -0.80 kcal Total: -88.45 2.71 -85.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007874654.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.786 kcal (2) G-P(sol) polarization free energy of solvation -88.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds