Wall clock time and date at job start Wed Apr 1 2020 05:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86798 * 120.00181 * 2 1 4 4 H 1.48499 * 109.46859 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46948 * 299.99459 * 3 2 1 6 6 H 1.48497 * 109.47539 * 59.99233 * 3 2 1 7 7 C 1.38813 * 119.99373 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99380 * 195.04818 * 7 2 1 9 9 N 1.36935 * 120.00167 * 15.04743 * 7 2 1 10 10 C 1.46923 * 120.62955 * 213.92181 * 9 7 2 11 11 C 1.53195 * 108.77958 * 233.61322 * 10 9 7 12 12 C 1.53045 * 109.31042 * 305.37202 * 11 10 9 13 13 C 1.53038 * 109.54211 * 61.36103 * 12 11 10 14 14 H 1.09000 * 109.49483 * 58.61439 * 13 12 11 15 15 N 1.46494 * 109.49694 * 178.68451 * 13 12 11 16 16 C 1.34782 * 119.99595 * 204.93187 * 15 13 12 17 17 O 1.21781 * 120.00271 * 5.27350 * 16 15 13 18 18 C 1.41662 * 119.99586 * 184.99137 * 16 15 13 19 19 C 1.38713 * 126.80367 * 101.07455 * 18 16 15 20 20 Cl 1.73597 * 125.91473 * 359.97435 * 19 18 16 21 21 N 1.32419 * 108.17054 * 179.82662 * 19 18 16 22 22 C 1.33212 * 109.83251 * 0.44379 * 21 19 18 23 23 C 1.40659 * 131.77937 * 179.72089 * 22 21 19 24 24 C 1.36288 * 119.38565 * 180.02562 * 23 22 21 25 25 C 1.40168 * 119.60891 * 359.97438 * 24 23 22 26 26 C 1.35258 * 120.12518 * 359.97438 * 25 24 23 27 27 N 1.35955 * 120.63985 * 0.02882 * 26 25 24 28 28 C 1.46936 * 120.60244 * 33.95226 * 9 7 2 29 29 H 0.97006 * 119.99674 * 0.02562 * 1 2 3 30 30 H 1.08995 * 109.58482 * 113.82604 * 10 9 7 31 31 H 1.08997 * 109.70649 * 353.46944 * 10 9 7 32 32 H 1.08999 * 109.50086 * 185.41674 * 11 10 9 33 33 H 1.09002 * 109.51902 * 65.33376 * 11 10 9 34 34 H 1.09001 * 109.45567 * 301.34155 * 12 11 10 35 35 H 1.09000 * 109.45599 * 181.38595 * 12 11 10 36 36 H 0.96993 * 120.00180 * 24.93936 * 15 13 12 37 37 H 1.07998 * 120.30677 * 359.97438 * 23 22 21 38 38 H 1.08004 * 120.19118 * 180.02562 * 24 23 22 39 39 H 1.08005 * 119.93975 * 179.97438 * 25 24 23 40 40 H 1.07997 * 119.68177 * 180.02562 * 26 25 24 41 41 H 1.08999 * 109.61550 * 6.61471 * 28 9 7 42 42 H 1.08994 * 109.55626 * 246.18570 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8915 2.3965 1.2123 7 6 2.0102 -1.2022 0.0005 8 1 3.0625 -1.2182 0.2434 9 7 1.3607 -2.3679 -0.3068 10 6 1.7398 -3.6299 0.3430 11 6 2.0338 -4.6731 -0.7397 12 6 0.8277 -4.7853 -1.6752 13 6 0.5818 -3.4375 -2.3572 14 1 1.4718 -3.1437 -2.9137 15 7 -0.5532 -3.5544 -3.2759 16 6 -0.6585 -2.7169 -4.3267 17 8 0.2366 -1.9273 -4.5682 18 6 -1.8079 -2.7594 -5.1538 19 6 -2.8873 -1.8889 -5.1217 20 17 -3.0741 -0.5374 -4.0483 21 7 -3.7493 -2.2653 -6.0538 22 6 -3.2892 -3.3441 -6.6855 23 6 -3.8244 -4.1167 -7.7321 24 6 -3.1255 -5.1913 -8.1950 25 6 -1.8860 -5.5098 -7.6232 26 6 -1.3877 -4.7540 -6.6183 27 7 -2.0785 -3.6805 -6.1505 28 6 0.2718 -2.3797 -1.2933 29 1 -0.4850 0.8401 -0.0004 30 1 0.9206 -3.9773 0.9724 31 1 2.6297 -3.4761 0.9533 32 1 2.2227 -5.6395 -0.2721 33 1 2.9104 -4.3679 -1.3111 34 1 -0.0537 -5.0669 -1.0991 35 1 1.0246 -5.5447 -2.4319 36 1 -1.2290 -4.2342 -3.1279 37 1 -4.7806 -3.8613 -8.1641 38 1 -3.5240 -5.7932 -8.9983 39 1 -1.3278 -6.3605 -7.9857 40 1 -0.4318 -5.0057 -6.1832 41 1 0.1939 -1.3998 -1.7641 42 1 -0.6673 -2.6247 -0.7972 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009415920.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:14 Heat of formation + Delta-G solvation = 76.145461 kcal Electronic energy + Delta-G solvation = -28423.766290 eV Core-core repulsion = 24431.838489 eV Total energy + Delta-G solvation = -3991.927800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.18138 -39.54424 -37.87373 -37.25490 -36.48085 -34.25239 -34.03067 -32.68082 -30.64450 -30.20062 -29.85544 -28.39792 -25.26068 -24.58817 -23.80324 -22.70023 -22.23424 -21.68165 -20.39396 -19.51428 -18.27381 -17.37972 -16.91143 -16.78741 -16.51840 -15.98761 -15.55088 -15.26711 -14.84235 -14.58159 -14.11428 -14.09386 -13.79459 -13.43084 -13.03651 -12.94400 -12.85056 -12.44960 -12.36488 -12.29330 -11.95404 -11.43053 -11.31572 -11.27804 -11.02888 -10.83985 -10.73736 -10.57508 -10.47763 -10.24707 -10.09639 -9.99183 -9.69162 -9.53433 -9.00541 -8.68461 -8.43486 -8.18927 -6.57779 -5.75525 -3.25153 0.31213 0.66563 1.53413 2.06772 2.25192 2.80037 3.10253 3.42470 3.50389 3.51342 3.52574 3.86948 4.19799 4.36811 4.52464 4.54326 4.68319 4.93214 5.06631 5.29613 5.34235 5.37158 5.51654 5.56509 5.59382 5.63522 5.69286 5.81074 5.99733 6.03627 6.08084 6.29138 6.38515 6.41531 6.55018 6.63543 6.72595 6.82267 6.95368 7.22444 7.30283 7.65167 7.70063 7.86063 8.35100 8.51846 9.23525 9.85677 10.44143 11.32192 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.013104 B = 0.003662 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2136.312932 B = 7645.215035 C = 9139.426966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.014 3.986 3 Si 0.899 3.101 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.290 1.290 7 C -0.262 4.262 8 H 0.063 0.937 9 N -0.586 5.586 10 C 0.142 3.858 11 C -0.131 4.131 12 C -0.114 4.114 13 C 0.113 3.887 14 H 0.086 0.914 15 N -0.705 5.705 16 C 0.592 3.408 17 O -0.506 6.506 18 C -0.101 4.101 19 C 0.165 3.835 20 Cl 0.035 6.965 21 N -0.482 5.482 22 C 0.245 3.755 23 C -0.079 4.079 24 C -0.093 4.093 25 C -0.136 4.136 26 C 0.063 3.937 27 N -0.331 5.331 28 C 0.172 3.828 29 H 0.254 0.746 30 H 0.018 0.982 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.394 0.606 37 H 0.157 0.843 38 H 0.148 0.852 39 H 0.157 0.843 40 H 0.167 0.833 41 H 0.085 0.915 42 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.906 -15.689 -15.231 22.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.186 4.186 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.216 1.216 7 C -0.392 4.392 8 H 0.081 0.919 9 N -0.309 5.309 10 C 0.016 3.984 11 C -0.170 4.170 12 C -0.153 4.153 13 C 0.009 3.991 14 H 0.104 0.896 15 N -0.356 5.356 16 C 0.375 3.625 17 O -0.379 6.379 18 C -0.218 4.218 19 C 0.001 3.999 20 Cl 0.064 6.936 21 N -0.203 5.203 22 C 0.004 3.996 23 C -0.099 4.099 24 C -0.117 4.117 25 C -0.156 4.156 26 C -0.061 4.061 27 N -0.003 5.003 28 C 0.045 3.955 29 H 0.063 0.937 30 H 0.036 0.964 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.227 0.773 37 H 0.175 0.825 38 H 0.166 0.834 39 H 0.175 0.825 40 H 0.184 0.816 41 H 0.103 0.897 42 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -7.023 -14.398 -15.370 22.200 hybrid contribution 0.636 0.349 0.319 0.792 sum -6.388 -14.048 -15.051 21.557 Atomic orbital electron populations 1.70019 1.05353 1.25540 1.52670 1.25187 0.95260 0.98580 0.99612 0.86289 0.79537 0.84024 0.77307 1.20102 1.21332 1.21645 1.19101 0.91791 0.84336 1.43982 0.91886 1.43881 1.40489 1.03531 1.42963 1.20968 0.97950 0.86869 0.92624 1.22008 0.97215 0.99382 0.98439 1.21665 0.99438 0.95810 0.98358 1.22131 0.88178 0.97600 0.91234 0.89605 1.46197 1.27663 1.34580 1.27136 1.15349 0.84131 0.82224 0.80812 1.90933 1.38267 1.36997 1.71686 1.19812 1.02195 0.98271 1.01484 1.21339 0.90620 0.92957 0.95003 1.98472 1.97222 1.39294 1.58635 1.70172 1.29204 1.11380 1.09585 1.20771 0.84389 0.95441 0.98989 1.20344 1.01521 0.94040 0.94021 1.21128 0.94173 0.96498 0.99863 1.20910 0.97389 1.00980 0.96359 1.21759 0.98693 0.87475 0.98149 1.42538 1.16016 1.18498 1.23254 1.21000 0.89948 0.97021 0.87578 0.93653 0.96396 0.92544 0.92579 0.92103 0.92132 0.93179 0.77319 0.82522 0.83416 0.82545 0.81590 0.89694 0.96074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.58 11.53 55.49 0.64 -25.94 16 2 C 0.01 0.40 4.92 -17.43 -0.09 0.31 16 3 Si 0.90 22.54 29.58 -169.99 -5.03 17.51 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.26 -7.34 9.53 -15.06 -0.14 -7.49 16 8 H 0.06 1.74 7.87 -52.48 -0.41 1.32 16 9 N -0.59 -14.75 2.96 -172.31 -0.51 -15.26 16 10 C 0.14 2.91 6.51 -3.71 -0.02 2.89 16 11 C -0.13 -2.13 6.08 -26.61 -0.16 -2.30 16 12 C -0.11 -1.76 5.35 -26.69 -0.14 -1.91 16 13 C 0.11 2.15 2.65 -67.81 -0.18 1.97 16 14 H 0.09 1.83 7.51 -51.93 -0.39 1.44 16 15 N -0.71 -11.55 5.07 -56.57 -0.29 -11.84 16 16 C 0.59 10.87 7.11 -14.95 -0.11 10.76 16 17 O -0.51 -11.45 16.72 5.12 0.09 -11.37 16 18 C -0.10 -1.66 6.52 -83.42 -0.54 -2.20 16 19 C 0.17 2.85 7.77 -17.12 -0.13 2.71 16 20 Cl 0.04 0.63 29.11 -51.86 -1.51 -0.88 16 21 N -0.48 -7.64 11.25 -9.38 -0.11 -7.74 16 22 C 0.25 3.17 7.77 -156.05 -1.21 1.96 16 23 C -0.08 -0.66 10.10 -39.37 -0.40 -1.06 16 24 C -0.09 -0.52 10.07 -39.56 -0.40 -0.92 16 25 C -0.14 -0.80 10.00 -39.92 -0.40 -1.20 16 26 C 0.06 0.57 10.82 -16.79 -0.18 0.39 16 27 N -0.33 -4.29 2.96 -60.11 -0.18 -4.47 16 28 C 0.17 4.13 4.84 -3.70 -0.02 4.11 16 29 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 30 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 1.14 7.94 -51.93 -0.41 0.73 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.39 5.28 8.56 -40.82 -0.35 4.93 16 37 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.15 0.34 8.06 -52.48 -0.42 -0.09 16 39 H 0.16 0.40 8.06 -52.48 -0.42 -0.02 16 40 H 0.17 1.29 8.06 -52.49 -0.42 0.86 16 41 H 0.08 2.42 6.46 -51.93 -0.34 2.08 16 42 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 368.28 15.07 5.55 5.55 Total: -1.00 -35.24 368.28 -10.73 -45.98 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -5.26 Total: 0.44 kcal Atomic # 6 Polarization: 12.15 SS G_CDS: -4.13 Total: 8.03 kcal Atomic # 7 Polarization: -64.81 SS G_CDS: -0.44 Total: -65.25 kcal Atomic # 8 Polarization: -11.45 SS G_CDS: 0.09 Total: -11.37 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Atomic # 17 Polarization: 0.63 SS G_CDS: -1.51 Total: -0.88 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.24 -10.73 -45.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009415920.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.122 kcal (2) G-P(sol) polarization free energy of solvation -35.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.976 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds