Wall clock time and date at job start Wed Apr 1 2020 04:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99841 * 2 1 4 4 H 1.48498 * 109.46853 * 239.99964 * 3 2 1 5 5 H 1.48500 * 109.47082 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47252 * 120.00155 * 3 2 1 7 7 C 1.38811 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00107 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64722 * 14.73937 * 9 7 2 11 11 C 1.54912 * 104.83061 * 155.89025 * 10 9 7 12 12 C 1.55150 * 101.58410 * 37.00677 * 11 10 9 13 13 C 1.47023 * 125.65284 * 194.75813 * 9 7 2 14 14 H 1.09006 * 110.01061 * 300.53752 * 13 9 7 15 15 C 1.53006 * 109.88129 * 61.62084 * 13 9 7 16 16 N 1.46499 * 109.47190 * 182.39674 * 15 13 9 17 17 C 1.34771 * 119.99656 * 185.14119 * 16 15 13 18 18 O 1.21769 * 120.00612 * 359.97438 * 17 16 15 19 19 C 1.46279 * 119.99952 * 180.02562 * 17 16 15 20 20 N 1.34882 * 126.49836 * 359.68067 * 19 17 16 21 21 C 1.30186 * 109.73139 * 179.82143 * 20 19 17 22 22 N 1.36241 * 109.82674 * 0.45834 * 21 20 19 23 23 C 1.36569 * 132.77166 * 179.72723 * 22 21 20 24 24 C 1.35126 * 120.58027 * 180.02562 * 23 22 21 25 25 Cl 1.73602 * 119.79264 * 179.97438 * 24 23 22 26 26 C 1.40467 * 120.41723 * 359.95123 * 24 23 22 27 27 C 1.36327 * 119.54931 * 0.02863 * 26 24 23 28 28 C 1.37252 * 107.18787 * 359.71991 * 22 21 20 29 29 H 0.97002 * 120.00127 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.36531 * 37.05287 * 10 9 7 31 31 H 1.08995 * 110.45600 * 274.77057 * 10 9 7 32 32 H 1.09002 * 111.00563 * 278.93186 * 11 10 9 33 33 H 1.09005 * 111.00465 * 155.08399 * 11 10 9 34 34 H 1.08999 * 110.72487 * 206.13239 * 12 11 10 35 35 H 1.09006 * 110.71936 * 82.86189 * 12 11 10 36 36 H 1.08998 * 109.46502 * 62.39599 * 15 13 9 37 37 H 1.09004 * 109.46911 * 302.39929 * 15 13 9 38 38 H 0.96997 * 120.00061 * 5.41129 * 16 15 13 39 39 H 1.08005 * 125.09013 * 180.14170 * 21 20 19 40 40 H 1.08001 * 119.70800 * 0.02562 * 23 22 21 41 41 H 1.07997 * 120.22597 * 179.97438 * 26 24 23 42 42 H 1.08003 * 120.38487 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 -0.1075 -2.5530 -0.3025 11 6 -0.2465 -4.0226 -0.7724 12 6 0.7641 -4.7440 0.1579 13 6 1.8977 -3.7076 0.3066 14 1 2.7026 -3.9357 -0.3922 15 6 2.4331 -3.7239 1.7398 16 7 3.0519 -5.0229 2.0152 17 6 3.5024 -5.3057 3.2535 18 8 3.3956 -4.4814 4.1434 19 6 4.1208 -6.6025 3.5284 20 7 4.3006 -7.6084 2.6479 21 6 4.8862 -8.6100 3.2384 22 7 5.1101 -8.3078 4.5478 23 6 5.6781 -9.0039 5.5763 24 6 5.7764 -8.4544 6.8068 25 17 6.5016 -9.3580 8.0996 26 6 5.2958 -7.1564 7.0465 27 6 4.7271 -6.4513 6.0278 28 6 4.6332 -7.0381 4.7583 29 1 -0.4850 0.8401 -0.0004 30 1 -0.4076 -1.8705 -1.0977 31 1 -0.7086 -2.3818 0.5904 32 1 0.0417 -4.1273 -1.8184 33 1 -1.2594 -4.3908 -0.6092 34 1 1.1346 -5.6565 -0.3091 35 1 0.3108 -4.9612 1.1251 36 1 1.6114 -3.5579 2.4364 37 1 3.1758 -2.9350 1.8593 38 1 3.1409 -5.6780 1.3054 39 1 5.1500 -9.5431 2.7628 40 1 6.0521 -10.0025 5.4046 41 1 5.3756 -6.7204 8.0313 42 1 4.3528 -5.4524 6.1971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027894422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:47 Heat of formation + Delta-G solvation = 72.020854 kcal Electronic energy + Delta-G solvation = -27198.235372 eV Core-core repulsion = 23206.128715 eV Total energy + Delta-G solvation = -3992.106657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -43.24974 -39.23660 -38.27232 -37.49278 -36.82473 -34.15207 -33.83076 -32.42592 -31.17028 -29.80986 -29.14716 -28.16406 -25.09347 -24.51480 -24.28658 -22.90461 -22.76019 -20.41744 -20.01508 -19.48629 -18.52483 -17.44196 -17.00150 -16.62286 -16.49111 -16.23441 -15.72251 -15.06135 -14.91690 -14.71059 -14.53262 -14.14693 -13.80833 -13.52692 -13.27746 -13.13139 -12.92961 -12.59381 -12.04000 -11.82944 -11.75633 -11.67191 -11.63084 -11.25961 -11.08457 -10.90738 -10.84445 -10.73480 -10.17723 -10.09119 -9.96825 -9.79253 -9.72210 -9.66656 -9.62939 -8.62032 -8.52774 -7.93773 -6.79223 -5.72590 -3.08968 0.11617 0.50155 1.15360 2.14630 2.21800 2.71806 3.42550 3.47645 3.48390 3.50890 3.63707 3.85113 4.07526 4.14609 4.34447 4.41166 4.53332 4.76351 5.04859 5.21925 5.39532 5.42389 5.48110 5.58251 5.61840 5.68827 5.88170 5.93444 5.96459 6.14276 6.20522 6.33256 6.52596 6.54753 6.61711 6.69661 6.77833 6.88819 7.12382 7.26260 7.56230 7.65823 7.83285 7.93353 8.30009 8.54184 9.21806 9.82377 10.50331 11.39445 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.018973 B = 0.002145 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.429942 B =13050.796724 C =14031.985973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.002 4.002 3 Si 0.910 3.090 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.233 4.233 8 H 0.075 0.925 9 N -0.588 5.588 10 C 0.173 3.827 11 C -0.149 4.149 12 C -0.126 4.126 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.110 3.890 16 N -0.704 5.704 17 C 0.596 3.404 18 O -0.546 6.546 19 C -0.038 4.038 20 N -0.416 5.416 21 C 0.155 3.845 22 N -0.363 5.363 23 C 0.061 3.939 24 C -0.046 4.046 25 Cl -0.037 7.037 26 C -0.118 4.118 27 C -0.042 4.042 28 C 0.063 3.937 29 H 0.254 0.746 30 H 0.071 0.929 31 H 0.026 0.974 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.404 0.596 39 H 0.221 0.779 40 H 0.178 0.822 41 H 0.152 0.848 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.090 -23.160 11.864 28.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.199 4.199 3 Si 0.740 3.260 4 H -0.211 1.211 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.361 4.361 8 H 0.093 0.907 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.187 4.187 12 C -0.164 4.164 13 C 0.043 3.957 14 H 0.056 0.944 15 C -0.015 4.015 16 N -0.354 5.354 17 C 0.381 3.619 18 O -0.424 6.424 19 C -0.173 4.173 20 N -0.130 5.130 21 C -0.121 4.121 22 N -0.035 5.035 23 C -0.062 4.062 24 C -0.076 4.076 25 Cl -0.008 7.008 26 C -0.140 4.140 27 C -0.062 4.062 28 C -0.048 4.048 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.044 0.956 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.238 0.762 39 H 0.237 0.763 40 H 0.195 0.805 41 H 0.170 0.830 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 10.743 -22.427 11.613 27.446 hybrid contribution 0.913 0.219 0.700 1.171 sum 11.656 -22.209 12.313 27.941 Atomic orbital electron populations 1.69929 1.05006 1.25373 1.55896 1.24913 0.95675 0.97836 1.01465 0.86228 0.78585 0.83117 0.78021 1.21106 1.21602 1.20946 1.18944 0.90380 0.82197 1.44620 0.90696 1.44472 1.06406 1.01026 1.79363 1.21445 0.84797 0.90142 0.98822 1.23009 0.97554 0.99623 0.98560 1.22597 0.97045 0.97025 0.99704 1.21128 0.94591 0.88028 0.91908 0.94419 1.22281 0.97536 0.82415 0.99295 1.45905 1.59763 1.19234 1.10521 1.16493 0.78195 0.83864 0.83359 1.90821 1.58117 1.48159 1.45292 1.20767 1.10853 0.96763 0.88876 1.70125 1.12474 0.99449 1.30957 1.25164 1.06530 1.02015 0.78400 1.42911 1.38065 1.12629 1.09890 1.21290 1.00393 0.98734 0.85769 1.20223 1.03159 0.94627 0.89628 1.98409 1.81241 1.73796 1.47378 1.21102 0.99490 0.92246 1.01119 1.20844 0.95915 1.01311 0.88144 1.19347 1.03046 0.85773 0.96659 0.93586 0.91031 0.95598 0.92320 0.92389 0.92288 0.91852 0.91401 0.91380 0.76201 0.76259 0.80520 0.83042 0.81174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.88 10.58 55.49 0.59 -26.29 16 2 C 0.00 -0.05 5.47 -17.43 -0.10 -0.14 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.23 -6.45 9.76 -15.06 -0.15 -6.60 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.59 -14.84 3.13 -162.57 -0.51 -15.35 16 10 C 0.17 4.18 5.41 -2.52 -0.01 4.17 16 11 C -0.15 -2.80 7.08 -24.58 -0.17 -2.98 16 12 C -0.13 -2.20 6.10 -24.90 -0.15 -2.35 16 13 C 0.15 3.10 3.22 -66.95 -0.22 2.89 16 14 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 15 C 0.11 2.20 5.07 -4.04 -0.02 2.18 16 16 N -0.70 -11.88 5.32 -61.74 -0.33 -12.21 16 17 C 0.60 10.34 7.77 -13.03 -0.10 10.24 16 18 O -0.55 -10.93 15.75 5.13 0.08 -10.85 16 19 C -0.04 -0.54 7.05 -82.57 -0.58 -1.13 16 20 N -0.42 -5.20 10.90 -10.53 -0.11 -5.31 16 21 C 0.16 1.37 12.73 -89.53 -1.14 0.23 16 22 N -0.36 -3.35 2.94 -62.15 -0.18 -3.53 16 23 C 0.06 0.40 10.70 -16.55 -0.18 0.22 16 24 C -0.05 -0.33 6.28 -39.85 -0.25 -0.58 16 25 Cl -0.04 -0.22 28.93 -51.86 -1.50 -1.72 16 26 C -0.12 -0.94 9.87 -39.43 -0.39 -1.33 16 27 C -0.04 -0.45 9.73 -39.55 -0.38 -0.83 16 28 C 0.06 0.78 6.72 -83.99 -0.56 0.21 16 29 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 30 H 0.07 1.92 6.94 -51.93 -0.36 1.56 16 31 H 0.03 0.68 8.06 -51.93 -0.42 0.26 16 32 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 1.11 7.81 -51.93 -0.41 0.70 16 36 H 0.07 1.50 8.08 -51.93 -0.42 1.08 16 37 H 0.07 1.52 7.92 -51.93 -0.41 1.11 16 38 H 0.40 6.03 8.04 -40.82 -0.33 5.70 16 39 H 0.22 0.88 8.06 -52.48 -0.42 0.46 16 40 H 0.18 0.52 8.06 -52.49 -0.42 0.10 16 41 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 42 H 0.17 1.92 7.17 -52.48 -0.38 1.54 16 LS Contribution 368.28 15.07 5.55 5.55 Total: -1.00 -33.36 368.28 -11.07 -44.43 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: -5.22 Total: 3.80 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: -4.41 Total: 4.21 kcal Atomic # 7 Polarization: -62.14 SS G_CDS: -0.55 Total: -62.69 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.08 Total: -10.85 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Atomic # 17 Polarization: -0.22 SS G_CDS: -1.50 Total: -1.72 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.36 -11.07 -44.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027894422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.449 kcal (2) G-P(sol) polarization free energy of solvation -33.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds