Wall clock time and date at job start Wed Apr 1 2020 04:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31616 * 1 3 3 Si 1.86802 * 119.99841 * 2 1 4 4 H 1.48498 * 109.46853 * 239.99964 * 3 2 1 5 5 H 1.48500 * 109.47082 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47252 * 120.00155 * 3 2 1 7 7 C 1.38811 * 120.00178 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00107 * 179.97438 * 7 2 1 9 9 N 1.36933 * 119.99831 * 359.97438 * 7 2 1 10 10 C 1.47430 * 125.64722 * 14.73937 * 9 7 2 11 11 C 1.54912 * 104.83061 * 155.89025 * 10 9 7 12 12 C 1.55150 * 101.58410 * 37.00677 * 11 10 9 13 13 C 1.47023 * 125.65284 * 194.75813 * 9 7 2 14 14 H 1.09006 * 110.01061 * 300.53752 * 13 9 7 15 15 C 1.53006 * 109.88129 * 61.62084 * 13 9 7 16 16 N 1.46499 * 109.47190 * 182.39674 * 15 13 9 17 17 C 1.34771 * 119.99656 * 185.14119 * 16 15 13 18 18 O 1.21769 * 120.00612 * 359.97438 * 17 16 15 19 19 C 1.46279 * 119.99952 * 180.02562 * 17 16 15 20 20 N 1.34882 * 126.49836 * 359.68067 * 19 17 16 21 21 C 1.30186 * 109.73139 * 179.82143 * 20 19 17 22 22 N 1.36241 * 109.82674 * 0.45834 * 21 20 19 23 23 C 1.36569 * 132.77166 * 179.72723 * 22 21 20 24 24 C 1.35126 * 120.58027 * 180.02562 * 23 22 21 25 25 Cl 1.73602 * 119.79264 * 179.97438 * 24 23 22 26 26 C 1.40467 * 120.41723 * 359.95123 * 24 23 22 27 27 C 1.36327 * 119.54931 * 0.02863 * 26 24 23 28 28 C 1.37252 * 107.18787 * 359.71991 * 22 21 20 29 29 H 0.97002 * 120.00127 * 0.02562 * 1 2 3 30 30 H 1.08997 * 110.36531 * 37.05287 * 10 9 7 31 31 H 1.08995 * 110.45600 * 274.77057 * 10 9 7 32 32 H 1.09002 * 111.00563 * 278.93186 * 11 10 9 33 33 H 1.09005 * 111.00465 * 155.08399 * 11 10 9 34 34 H 1.08999 * 110.72487 * 206.13239 * 12 11 10 35 35 H 1.09006 * 110.71936 * 82.86189 * 12 11 10 36 36 H 1.08998 * 109.46502 * 62.39599 * 15 13 9 37 37 H 1.09004 * 109.46911 * 302.39929 * 15 13 9 38 38 H 0.96997 * 120.00061 * 5.41129 * 16 15 13 39 39 H 1.08005 * 125.09013 * 180.14170 * 21 20 19 40 40 H 1.08001 * 119.70800 * 0.02562 * 23 22 21 41 41 H 1.07997 * 120.22597 * 179.97438 * 26 24 23 42 42 H 1.08003 * 120.38487 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0016 10 6 -0.1075 -2.5530 -0.3025 11 6 -0.2465 -4.0226 -0.7724 12 6 0.7641 -4.7440 0.1579 13 6 1.8977 -3.7076 0.3066 14 1 2.7026 -3.9357 -0.3922 15 6 2.4331 -3.7239 1.7398 16 7 3.0519 -5.0229 2.0152 17 6 3.5024 -5.3057 3.2535 18 8 3.3956 -4.4814 4.1434 19 6 4.1208 -6.6025 3.5284 20 7 4.3006 -7.6084 2.6479 21 6 4.8862 -8.6100 3.2384 22 7 5.1101 -8.3078 4.5478 23 6 5.6781 -9.0039 5.5763 24 6 5.7764 -8.4544 6.8068 25 17 6.5016 -9.3580 8.0996 26 6 5.2958 -7.1564 7.0465 27 6 4.7271 -6.4513 6.0278 28 6 4.6332 -7.0381 4.7583 29 1 -0.4850 0.8401 -0.0004 30 1 -0.4076 -1.8705 -1.0977 31 1 -0.7086 -2.3818 0.5904 32 1 0.0417 -4.1273 -1.8184 33 1 -1.2594 -4.3908 -0.6092 34 1 1.1346 -5.6565 -0.3091 35 1 0.3108 -4.9612 1.1251 36 1 1.6114 -3.5579 2.4364 37 1 3.1758 -2.9350 1.8593 38 1 3.1409 -5.6780 1.3054 39 1 5.1500 -9.5431 2.7628 40 1 6.0521 -10.0025 5.4046 41 1 5.3756 -6.7204 8.0313 42 1 4.3528 -5.4524 6.1971 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027894422.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:46 Heat of formation + Delta-G solvation = 51.731384 kcal Electronic energy + Delta-G solvation = -27199.115189 eV Core-core repulsion = 23206.128715 eV Total energy + Delta-G solvation = -3992.986474 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.01659 -40.61289 -39.25080 -38.89748 -37.41059 -35.72236 -34.61087 -34.38401 -31.89398 -31.48843 -30.70731 -29.31798 -26.78890 -25.98262 -25.18892 -24.12107 -23.52606 -22.03886 -21.40928 -21.10122 -19.52367 -18.67976 -18.18565 -17.66078 -17.33663 -17.28710 -17.07665 -16.58402 -16.21088 -15.96113 -15.71175 -15.54133 -15.32540 -14.66073 -14.55721 -14.07858 -13.95145 -13.91128 -13.64962 -13.41042 -13.19342 -12.98153 -12.86137 -12.64862 -12.38805 -12.19205 -12.05413 -11.89635 -11.87291 -11.73392 -11.69573 -11.49047 -11.40863 -11.16367 -10.67081 -10.34408 -10.10052 -8.85920 -8.72561 -7.87866 -5.25703 -0.58780 -0.23709 0.58779 1.20279 1.44201 1.48017 1.52238 1.53806 2.02220 2.20790 2.48183 2.50921 3.24643 3.26633 3.31556 3.52706 3.62528 3.69035 3.78438 3.94574 3.98586 4.09198 4.17059 4.26876 4.45967 4.54010 4.58415 4.72508 4.76470 4.88389 4.94706 4.98694 5.10118 5.14499 5.19704 5.22436 5.37157 5.46572 5.56711 5.66477 5.78074 5.91026 6.23135 6.36753 6.70155 7.09338 7.22770 7.75998 8.42691 9.23016 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.018973 B = 0.002145 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1475.429942 B =13050.796724 C =14031.985973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.945 5.945 2 C -0.060 4.060 3 Si 0.973 3.027 4 H -0.273 1.273 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.242 4.242 8 H 0.076 0.924 9 N -0.609 5.609 10 C 0.174 3.826 11 C -0.132 4.132 12 C -0.112 4.112 13 C 0.149 3.851 14 H 0.049 0.951 15 C 0.132 3.868 16 N -0.696 5.696 17 C 0.593 3.407 18 O -0.587 6.587 19 C -0.091 4.091 20 N -0.439 5.439 21 C 0.178 3.822 22 N -0.364 5.364 23 C 0.086 3.914 24 C -0.064 4.064 25 Cl -0.020 7.020 26 C -0.084 4.084 27 C -0.088 4.088 28 C 0.067 3.933 29 H 0.248 0.752 30 H 0.038 0.962 31 H -0.008 1.008 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.039 0.961 37 H 0.036 0.964 38 H 0.415 0.585 39 H 0.273 0.727 40 H 0.224 0.776 41 H 0.172 0.828 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.232 -27.467 12.279 32.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.254 4.254 3 Si 0.801 3.199 4 H -0.199 1.199 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.371 4.371 8 H 0.093 0.907 9 N -0.334 5.334 10 C 0.049 3.951 11 C -0.171 4.171 12 C -0.150 4.150 13 C 0.042 3.958 14 H 0.067 0.933 15 C 0.006 3.994 16 N -0.347 5.347 17 C 0.381 3.619 18 O -0.468 6.468 19 C -0.223 4.223 20 N -0.153 5.153 21 C -0.100 4.100 22 N -0.035 5.035 23 C -0.037 4.037 24 C -0.093 4.093 25 Cl 0.009 6.991 26 C -0.105 4.105 27 C -0.108 4.108 28 C -0.046 4.046 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.010 0.990 32 H 0.090 0.910 33 H 0.102 0.898 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.054 0.946 38 H 0.252 0.748 39 H 0.289 0.711 40 H 0.240 0.760 41 H 0.189 0.811 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.900 -26.770 12.001 32.048 hybrid contribution 0.405 1.328 0.766 1.586 sum 13.304 -25.442 12.767 31.421 Atomic orbital electron populations 1.70134 1.06272 1.25512 1.57373 1.25706 0.96560 1.01030 1.02055 0.85236 0.77329 0.79103 0.78190 1.19920 1.21795 1.20828 1.19265 0.90728 0.83597 1.43515 0.90665 1.44733 1.06885 1.02048 1.79725 1.21266 0.84037 0.93371 0.96380 1.22879 0.99543 0.95359 0.99308 1.22566 0.95285 0.97335 0.99815 1.21301 0.96004 0.86867 0.91665 0.93320 1.21717 0.95724 0.83400 0.98588 1.45623 1.59833 1.18056 1.11160 1.16960 0.77428 0.84927 0.82585 1.90780 1.59788 1.49915 1.46336 1.20141 1.14893 0.96470 0.90764 1.70009 1.13863 0.99929 1.31510 1.26200 1.03676 1.02306 0.77821 1.43106 1.37950 1.11643 1.10816 1.22058 0.97370 0.99667 0.84609 1.20287 1.03935 0.94492 0.90628 1.98426 1.80892 1.73160 1.46597 1.21390 0.95858 0.92265 1.01012 1.20694 0.99604 1.01546 0.88921 1.19388 1.01962 0.86997 0.96275 0.94251 0.94380 0.98957 0.90995 0.89832 0.88143 0.91938 0.94251 0.94592 0.74805 0.71126 0.75965 0.81082 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.16 10.58 21.65 0.23 -57.93 16 2 C -0.06 -3.50 5.47 84.86 0.46 -3.04 16 3 Si 0.97 47.40 29.55 68.60 2.03 49.42 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 6 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 7 C -0.24 -13.92 9.76 84.03 0.82 -13.10 16 8 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.61 -31.86 3.13 -668.25 -2.09 -33.95 16 10 C 0.17 8.77 5.41 86.86 0.47 9.24 16 11 C -0.13 -4.83 7.08 31.98 0.23 -4.60 16 12 C -0.11 -3.76 6.10 31.78 0.19 -3.57 16 13 C 0.15 6.17 3.22 45.34 0.15 6.31 16 14 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 15 C 0.13 5.61 5.07 86.38 0.44 6.05 16 16 N -0.70 -24.36 5.32 -467.42 -2.49 -26.84 16 17 C 0.59 21.80 7.77 86.33 0.67 22.47 16 18 O -0.59 -25.54 15.75 -4.57 -0.07 -25.61 16 19 C -0.09 -2.67 7.05 41.24 0.29 -2.38 16 20 N -0.44 -10.27 10.90 -187.23 -2.04 -12.31 16 21 C 0.18 2.47 12.73 179.97 2.29 4.76 16 22 N -0.36 -5.55 2.94 -350.54 -1.03 -6.58 16 23 C 0.09 0.73 10.70 83.24 0.89 1.62 16 24 C -0.06 -0.67 6.28 22.10 0.14 -0.53 16 25 Cl -0.02 -0.16 28.93 -2.72 -0.08 -0.24 16 26 C -0.08 -1.18 9.87 22.37 0.22 -0.96 16 27 C -0.09 -1.90 9.73 22.29 0.22 -1.68 16 28 C 0.07 1.62 6.72 39.23 0.26 1.88 16 29 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 30 H 0.04 2.14 6.94 -2.39 -0.02 2.12 16 31 H -0.01 -0.43 8.06 -2.39 -0.02 -0.45 16 32 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 34 H 0.10 2.61 8.14 -2.39 -0.02 2.59 16 35 H 0.06 2.13 7.81 -2.38 -0.02 2.11 16 36 H 0.04 1.87 8.08 -2.39 -0.02 1.85 16 37 H 0.04 1.73 7.92 -2.39 -0.02 1.71 16 38 H 0.42 12.35 8.04 -92.71 -0.75 11.60 16 39 H 0.27 0.50 8.06 -2.91 -0.02 0.48 16 40 H 0.22 -0.17 8.06 -2.91 -0.02 -0.19 16 41 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 42 H 0.15 3.78 7.17 -2.91 -0.02 3.76 16 Total: -1.00 -79.93 368.28 2.52 -77.41 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: 0.32 Total: 14.15 kcal Atomic # 6 Polarization: 14.73 SS G_CDS: 7.74 Total: 22.47 kcal Atomic # 7 Polarization: -130.19 SS G_CDS: -7.42 Total: -137.61 kcal Atomic # 8 Polarization: -25.54 SS G_CDS: -0.07 Total: -25.61 kcal Atomic # 14 Polarization: 47.40 SS G_CDS: 2.03 Total: 49.42 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.24 kcal Total: -79.93 2.52 -77.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027894422.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.144 kcal (2) G-P(sol) polarization free energy of solvation -79.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.412 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds