Wall clock time and date at job start Wed Apr 1 2020 04:46:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99757 * 2 1 4 4 H 1.48503 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47254 * 300.00034 * 3 2 1 6 6 H 1.48508 * 109.47152 * 60.00181 * 3 2 1 7 7 C 1.38810 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00474 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99600 * 359.97438 * 7 2 1 10 10 C 1.47427 * 125.64977 * 351.03507 * 9 7 2 11 11 C 1.54912 * 104.93046 * 204.09645 * 10 9 7 12 12 C 1.55276 * 101.52478 * 323.12904 * 11 10 9 13 13 C 1.47020 * 125.65075 * 171.06185 * 9 7 2 14 14 H 1.09007 * 109.88284 * 59.49865 * 13 9 7 15 15 C 1.53002 * 109.88352 * 298.34099 * 13 9 7 16 16 N 1.46494 * 109.47146 * 174.77788 * 15 13 9 17 17 C 1.34784 * 119.99710 * 184.87345 * 16 15 13 18 18 O 1.21717 * 120.00009 * 0.02562 * 17 16 15 19 19 C 1.46569 * 119.99668 * 179.97438 * 17 16 15 20 20 C 1.40545 * 126.58481 * 354.48545 * 19 17 16 21 21 N 1.30744 * 108.74072 * 179.81710 * 20 19 17 22 22 N 1.40017 * 109.60503 * 0.45068 * 21 20 19 23 23 C 1.36270 * 132.01034 * 179.73658 * 22 21 20 24 24 C 1.35174 * 120.72820 * 179.97438 * 23 22 21 25 25 C 1.40148 * 120.33471 * 359.97438 * 24 23 22 26 26 C 1.36542 * 119.39736 * 0.02562 * 25 24 23 27 27 Cl 1.73601 * 120.38394 * 180.02562 * 26 25 24 28 28 C 1.36556 * 107.90303 * 359.71642 * 22 21 20 29 29 H 0.96997 * 120.00246 * 359.97438 * 1 2 3 30 30 H 1.08996 * 110.36734 * 322.99058 * 10 9 7 31 31 H 1.08998 * 110.36374 * 85.20473 * 10 9 7 32 32 H 1.08999 * 111.00218 * 81.12060 * 11 10 9 33 33 H 1.08997 * 111.00410 * 204.97201 * 11 10 9 34 34 H 1.09002 * 110.62418 * 277.00071 * 12 11 10 35 35 H 1.09006 * 110.75445 * 153.77852 * 12 11 10 36 36 H 1.09005 * 109.46416 * 294.77832 * 15 13 9 37 37 H 1.08999 * 109.46791 * 54.77209 * 15 13 9 38 38 H 0.96996 * 120.00753 * 4.87416 * 16 15 13 39 39 H 1.08001 * 125.62386 * 359.97438 * 20 19 17 40 40 H 1.08001 * 119.63509 * 359.97438 * 23 22 21 41 41 H 1.08006 * 119.83351 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.30123 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1287 -2.5405 0.1867 11 6 -0.3137 -3.9844 0.7165 12 6 0.7748 -4.7502 -0.0834 13 6 1.9192 -3.7201 -0.1867 14 1 2.6588 -3.9085 0.5916 15 6 2.5765 -3.8089 -1.5655 16 7 3.2712 -5.0923 -1.6935 17 6 4.0082 -5.3530 -2.7915 18 8 4.0969 -4.5219 -3.6764 19 6 4.7037 -6.6368 -2.9194 20 6 4.7869 -7.6452 -1.9439 21 7 5.4858 -8.6394 -2.4261 22 7 5.9023 -8.3333 -3.7274 23 6 6.6447 -9.0282 -4.6345 24 6 6.9156 -8.5050 -5.8511 25 6 6.4344 -7.2355 -6.1988 26 6 5.6895 -6.5310 -5.2970 27 17 5.0800 -4.9565 -5.7010 28 6 5.4222 -7.0941 -4.0413 29 1 -0.4850 0.8400 0.0004 30 1 -0.4950 -1.8187 0.9167 31 1 -0.6486 -2.4155 -0.7631 32 1 -0.1186 -4.0354 1.7877 33 1 -1.3096 -4.3613 0.4839 34 1 0.4064 -5.0180 -1.0737 35 1 1.1017 -5.6367 0.4603 36 1 1.8116 -3.7310 -2.3382 37 1 3.2925 -2.9950 -1.6797 38 1 3.2008 -5.7544 -0.9883 39 1 4.3443 -7.6063 -0.9595 40 1 7.0209 -10.0077 -4.3786 41 1 7.5051 -9.0686 -6.5592 42 1 6.6514 -6.8179 -7.1709 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028011468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:40 Heat of formation + Delta-G solvation = 108.767739 kcal Electronic energy + Delta-G solvation = -27705.712315 eV Core-core repulsion = 23715.199123 eV Total energy + Delta-G solvation = -3990.513192 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.47606 -39.08507 -37.78776 -37.43666 -36.40219 -34.07877 -32.96538 -32.42666 -31.21481 -29.90997 -29.24339 -28.16616 -25.01624 -24.25691 -24.23136 -22.90556 -22.51240 -20.37550 -19.92852 -19.47191 -18.24653 -17.31167 -16.88424 -16.53843 -16.21816 -16.10304 -15.68074 -15.28522 -14.72423 -14.51702 -14.24444 -13.78857 -13.71326 -13.32792 -13.09881 -12.90987 -12.88248 -12.55147 -12.04826 -11.86844 -11.81523 -11.60974 -11.55814 -11.27903 -10.93047 -10.77957 -10.68289 -10.20422 -10.14777 -10.04523 -9.87349 -9.83035 -9.77189 -9.61087 -8.93706 -8.61464 -8.47581 -7.89696 -6.83432 -5.70039 -3.07028 0.14454 0.55925 1.56870 1.97556 2.19398 2.73478 3.42196 3.48719 3.50785 3.54153 3.72098 3.96016 4.03787 4.26392 4.33223 4.53168 4.78205 4.91857 5.01395 5.23906 5.36227 5.39387 5.45173 5.52522 5.62071 5.67428 5.71982 5.86060 5.99999 6.12121 6.21457 6.29060 6.33516 6.51449 6.60940 6.68682 6.81851 6.90679 7.05648 7.14436 7.58937 7.63389 7.85173 7.97507 8.31165 8.72320 9.22202 9.82895 10.48198 11.39678 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.015513 B = 0.002777 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.521033 B =10080.133277 C =11279.076583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.006 4.006 3 Si 0.911 3.089 4 H -0.279 1.279 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.590 5.590 10 C 0.167 3.833 11 C -0.148 4.148 12 C -0.127 4.127 13 C 0.152 3.848 14 H 0.038 0.962 15 C 0.114 3.886 16 N -0.721 5.721 17 C 0.580 3.420 18 O -0.529 6.529 19 C -0.283 4.283 20 C 0.116 3.884 21 N -0.312 5.312 22 N -0.263 5.263 23 C 0.108 3.892 24 C -0.151 4.151 25 C -0.079 4.079 26 C -0.034 4.034 27 Cl 0.022 6.978 28 C 0.153 3.847 29 H 0.252 0.748 30 H 0.084 0.916 31 H 0.020 0.980 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.057 0.943 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.390 0.610 39 H 0.202 0.798 40 H 0.176 0.824 41 H 0.165 0.835 42 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.855 -21.253 -9.668 26.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.202 4.202 3 Si 0.741 3.259 4 H -0.204 1.204 5 H -0.217 1.217 6 H -0.218 1.218 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.314 5.314 10 C 0.042 3.958 11 C -0.187 4.187 12 C -0.165 4.165 13 C 0.043 3.957 14 H 0.055 0.945 15 C -0.011 4.011 16 N -0.372 5.372 17 C 0.367 3.633 18 O -0.407 6.407 19 C -0.298 4.298 20 C -0.063 4.063 21 N -0.133 5.133 22 N -0.028 5.028 23 C -0.018 4.018 24 C -0.173 4.173 25 C -0.103 4.103 26 C -0.063 4.063 27 Cl 0.052 6.948 28 C 0.032 3.968 29 H 0.062 0.938 30 H 0.103 0.897 31 H 0.038 0.962 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.223 0.777 39 H 0.219 0.781 40 H 0.193 0.807 41 H 0.182 0.818 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 12.206 -21.412 -9.929 26.571 hybrid contribution 0.090 1.323 0.077 1.328 sum 12.295 -20.090 -9.851 25.531 Atomic orbital electron populations 1.69932 1.04942 1.24961 1.56766 1.24828 0.95696 0.97773 1.01915 0.86055 0.78888 0.83713 0.77196 1.20403 1.21683 1.21788 1.19073 0.90509 0.82233 1.43700 0.90435 1.44516 1.03617 0.99940 1.83363 1.21594 0.84262 0.91025 0.98930 1.23026 0.97069 0.99492 0.99112 1.22648 0.96886 0.96959 1.00026 1.21117 0.93923 0.87683 0.92933 0.94464 1.22165 0.95959 0.83299 0.99643 1.45899 1.50887 1.19735 1.20633 1.16931 0.78598 0.85330 0.82470 1.91009 1.62905 1.48038 1.38741 1.20014 1.14765 1.00396 0.94653 1.24141 0.93440 0.89328 0.99438 1.77609 1.22934 1.23739 0.88990 1.46059 1.33361 1.11633 1.11729 1.21637 0.93861 0.98389 0.87864 1.20851 1.03881 0.96619 0.95903 1.21309 0.95216 0.93909 0.99852 1.20293 1.01039 0.92546 0.92445 1.98516 1.84789 1.19087 1.92418 1.18952 0.96754 0.86689 0.94454 0.93757 0.89746 0.96185 0.92336 0.92411 0.91815 0.92421 0.92139 0.91150 0.77728 0.78124 0.80683 0.81758 0.82926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.89 10.36 55.49 0.57 -26.31 16 2 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 3 Si 0.91 22.40 29.55 -169.99 -5.02 17.37 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 6 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 7 C -0.23 -6.26 9.73 -15.06 -0.15 -6.40 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.59 -14.70 3.13 -162.57 -0.51 -15.20 16 10 C 0.17 3.99 5.54 -2.53 -0.01 3.98 16 11 C -0.15 -2.73 7.10 -24.52 -0.17 -2.90 16 12 C -0.13 -2.10 6.11 -24.83 -0.15 -2.25 16 13 C 0.15 2.99 3.22 -66.96 -0.22 2.78 16 14 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 15 C 0.11 2.21 5.11 -4.04 -0.02 2.19 16 16 N -0.72 -11.05 5.40 -61.65 -0.33 -11.38 16 17 C 0.58 9.57 7.78 -12.90 -0.10 9.47 16 18 O -0.53 -10.32 12.09 5.17 0.06 -10.26 16 19 C -0.28 -3.95 6.16 -104.68 -0.65 -4.59 16 20 C 0.12 1.30 11.44 -17.15 -0.20 1.11 16 21 N -0.31 -3.67 12.57 30.75 0.39 -3.29 16 22 N -0.26 -2.93 3.86 -10.52 -0.04 -2.97 16 23 C 0.11 0.76 11.17 -16.67 -0.19 0.58 16 24 C -0.15 -0.81 9.98 -39.96 -0.40 -1.21 16 25 C -0.08 -0.61 9.87 -39.48 -0.39 -1.00 16 26 C -0.03 -0.41 6.33 -39.46 -0.25 -0.66 16 27 Cl 0.02 0.32 24.34 -51.86 -1.26 -0.94 16 28 C 0.15 2.01 6.74 -84.04 -0.57 1.44 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.08 2.27 6.51 -51.93 -0.34 1.93 16 31 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.06 1.05 7.76 -51.93 -0.40 0.64 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.29 8.02 -51.93 -0.42 0.87 16 37 H 0.07 1.57 7.84 -51.93 -0.41 1.16 16 38 H 0.39 4.69 7.22 -40.82 -0.29 4.39 16 39 H 0.20 1.49 7.49 -52.49 -0.39 1.10 16 40 H 0.18 0.65 8.06 -52.49 -0.42 0.22 16 41 H 0.16 0.23 8.06 -52.48 -0.42 -0.19 16 42 H 0.15 0.80 8.06 -52.49 -0.42 0.38 16 LS Contribution 360.23 15.07 5.43 5.43 Total: -1.00 -34.77 360.23 -9.45 -44.22 By element: Atomic # 1 Polarization: 6.24 SS G_CDS: -5.18 Total: 1.06 kcal Atomic # 6 Polarization: 5.81 SS G_CDS: -3.55 Total: 2.26 kcal Atomic # 7 Polarization: -59.23 SS G_CDS: 0.08 Total: -59.15 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.06 Total: -10.26 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Atomic # 17 Polarization: 0.32 SS G_CDS: -1.26 Total: -0.94 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.77 -9.45 -44.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028011468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.988 kcal (2) G-P(sol) polarization free energy of solvation -34.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds