Wall clock time and date at job start Wed Apr 1 2020 04:46:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86801 * 119.99757 * 2 1 4 4 H 1.48503 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47254 * 300.00034 * 3 2 1 6 6 H 1.48508 * 109.47152 * 60.00181 * 3 2 1 7 7 C 1.38810 * 120.00452 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00474 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99600 * 359.97438 * 7 2 1 10 10 C 1.47427 * 125.64977 * 351.03507 * 9 7 2 11 11 C 1.54912 * 104.93046 * 204.09645 * 10 9 7 12 12 C 1.55276 * 101.52478 * 323.12904 * 11 10 9 13 13 C 1.47020 * 125.65075 * 171.06185 * 9 7 2 14 14 H 1.09007 * 109.88284 * 59.49865 * 13 9 7 15 15 C 1.53002 * 109.88352 * 298.34099 * 13 9 7 16 16 N 1.46494 * 109.47146 * 174.77788 * 15 13 9 17 17 C 1.34784 * 119.99710 * 184.87345 * 16 15 13 18 18 O 1.21717 * 120.00009 * 0.02562 * 17 16 15 19 19 C 1.46569 * 119.99668 * 179.97438 * 17 16 15 20 20 C 1.40545 * 126.58481 * 354.48545 * 19 17 16 21 21 N 1.30744 * 108.74072 * 179.81710 * 20 19 17 22 22 N 1.40017 * 109.60503 * 0.45068 * 21 20 19 23 23 C 1.36270 * 132.01034 * 179.73658 * 22 21 20 24 24 C 1.35174 * 120.72820 * 179.97438 * 23 22 21 25 25 C 1.40148 * 120.33471 * 359.97438 * 24 23 22 26 26 C 1.36542 * 119.39736 * 0.02562 * 25 24 23 27 27 Cl 1.73601 * 120.38394 * 180.02562 * 26 25 24 28 28 C 1.36556 * 107.90303 * 359.71642 * 22 21 20 29 29 H 0.96997 * 120.00246 * 359.97438 * 1 2 3 30 30 H 1.08996 * 110.36734 * 322.99058 * 10 9 7 31 31 H 1.08998 * 110.36374 * 85.20473 * 10 9 7 32 32 H 1.08999 * 111.00218 * 81.12060 * 11 10 9 33 33 H 1.08997 * 111.00410 * 204.97201 * 11 10 9 34 34 H 1.09002 * 110.62418 * 277.00071 * 12 11 10 35 35 H 1.09006 * 110.75445 * 153.77852 * 12 11 10 36 36 H 1.09005 * 109.46416 * 294.77832 * 15 13 9 37 37 H 1.08999 * 109.46791 * 54.77209 * 15 13 9 38 38 H 0.96996 * 120.00753 * 4.87416 * 16 15 13 39 39 H 1.08001 * 125.62386 * 359.97438 * 20 19 17 40 40 H 1.08001 * 119.63509 * 359.97438 * 23 22 21 41 41 H 1.08006 * 119.83351 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.30123 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2124 6 1 1.8913 2.3965 1.2126 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3257 -2.3880 -0.0005 10 6 -0.1287 -2.5405 0.1867 11 6 -0.3137 -3.9844 0.7165 12 6 0.7748 -4.7502 -0.0834 13 6 1.9192 -3.7201 -0.1867 14 1 2.6588 -3.9085 0.5916 15 6 2.5765 -3.8089 -1.5655 16 7 3.2712 -5.0923 -1.6935 17 6 4.0082 -5.3530 -2.7915 18 8 4.0969 -4.5219 -3.6764 19 6 4.7037 -6.6368 -2.9194 20 6 4.7869 -7.6452 -1.9439 21 7 5.4858 -8.6394 -2.4261 22 7 5.9023 -8.3333 -3.7274 23 6 6.6447 -9.0282 -4.6345 24 6 6.9156 -8.5050 -5.8511 25 6 6.4344 -7.2355 -6.1988 26 6 5.6895 -6.5310 -5.2970 27 17 5.0800 -4.9565 -5.7010 28 6 5.4222 -7.0941 -4.0413 29 1 -0.4850 0.8400 0.0004 30 1 -0.4950 -1.8187 0.9167 31 1 -0.6486 -2.4155 -0.7631 32 1 -0.1186 -4.0354 1.7877 33 1 -1.3096 -4.3613 0.4839 34 1 0.4064 -5.0180 -1.0737 35 1 1.1017 -5.6367 0.4603 36 1 1.8116 -3.7310 -2.3382 37 1 3.2925 -2.9950 -1.6797 38 1 3.2008 -5.7544 -0.9883 39 1 4.3443 -7.6063 -0.9595 40 1 7.0209 -10.0077 -4.3786 41 1 7.5051 -9.0686 -6.5592 42 1 6.6514 -6.8179 -7.1709 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028011468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:39 Heat of formation + Delta-G solvation = 85.170186 kcal Electronic energy + Delta-G solvation = -27706.735582 eV Core-core repulsion = 23715.199123 eV Total energy + Delta-G solvation = -3991.536459 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.26384 -40.40104 -39.13276 -38.47253 -37.27385 -35.58172 -34.36726 -33.74883 -31.95340 -31.47829 -30.74250 -29.39525 -26.73927 -25.83446 -24.94618 -23.99872 -23.40240 -22.00378 -21.24459 -21.02521 -19.29810 -18.61651 -18.05155 -17.47976 -17.25331 -17.05520 -16.96959 -16.45486 -16.03979 -15.95370 -15.73755 -15.56992 -14.67432 -14.52721 -14.31958 -13.91420 -13.77667 -13.72878 -13.61171 -13.38743 -13.22354 -13.00766 -12.87633 -12.70293 -12.49048 -12.42883 -11.98606 -11.83160 -11.68641 -11.56722 -11.39837 -11.36687 -11.10266 -10.69899 -10.60081 -10.16333 -9.90330 -8.87423 -8.72485 -7.84208 -5.22081 -0.56369 -0.16584 0.81723 1.06420 1.40726 1.43521 1.45463 1.54972 2.05271 2.31426 2.52429 2.57884 3.17668 3.28352 3.32694 3.67712 3.76425 3.77871 3.96813 4.03794 4.05898 4.18605 4.29031 4.37586 4.49122 4.54353 4.62130 4.73741 4.78737 4.91579 5.01800 5.05386 5.12411 5.18758 5.23207 5.27834 5.45639 5.51013 5.63789 5.65885 5.71617 5.82128 6.26177 6.26673 6.79589 7.11332 7.51124 7.78943 8.42786 9.24207 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.015513 B = 0.002777 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1804.521033 B =10080.133277 C =11279.076583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.064 4.064 3 Si 0.971 3.029 4 H -0.270 1.270 5 H -0.295 1.295 6 H -0.287 1.287 7 C -0.232 4.232 8 H 0.076 0.924 9 N -0.612 5.612 10 C 0.167 3.833 11 C -0.133 4.133 12 C -0.113 4.113 13 C 0.148 3.852 14 H 0.050 0.950 15 C 0.138 3.862 16 N -0.707 5.707 17 C 0.577 3.423 18 O -0.568 6.568 19 C -0.327 4.327 20 C 0.130 3.870 21 N -0.328 5.328 22 N -0.265 5.265 23 C 0.106 3.894 24 C -0.134 4.134 25 C -0.048 4.048 26 C -0.081 4.081 27 Cl -0.018 7.018 28 C 0.142 3.858 29 H 0.246 0.754 30 H 0.048 0.952 31 H -0.014 1.014 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.065 0.935 35 H 0.106 0.894 36 H 0.033 0.967 37 H 0.031 0.969 38 H 0.409 0.591 39 H 0.233 0.767 40 H 0.215 0.785 41 H 0.219 0.781 42 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.132 -25.431 -10.045 30.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.257 4.257 3 Si 0.800 3.200 4 H -0.194 1.194 5 H -0.223 1.223 6 H -0.214 1.214 7 C -0.361 4.361 8 H 0.093 0.907 9 N -0.336 5.336 10 C 0.042 3.958 11 C -0.171 4.171 12 C -0.151 4.151 13 C 0.041 3.959 14 H 0.068 0.932 15 C 0.012 3.988 16 N -0.360 5.360 17 C 0.366 3.634 18 O -0.448 6.448 19 C -0.342 4.342 20 C -0.050 4.050 21 N -0.148 5.148 22 N -0.029 5.029 23 C -0.019 4.019 24 C -0.154 4.154 25 C -0.072 4.072 26 C -0.110 4.110 27 Cl 0.011 6.989 28 C 0.020 3.980 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.004 0.996 32 H 0.088 0.912 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.125 0.875 36 H 0.051 0.949 37 H 0.049 0.951 38 H 0.245 0.755 39 H 0.249 0.751 40 H 0.231 0.769 41 H 0.235 0.765 42 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 14.512 -25.668 -10.281 31.227 hybrid contribution -0.426 2.408 0.008 2.445 sum 14.086 -23.261 -10.273 29.069 Atomic orbital electron populations 1.70145 1.06124 1.25066 1.58292 1.25588 0.96555 1.00809 1.02709 0.85116 0.78177 0.79982 0.76744 1.19416 1.22260 1.21415 1.19344 0.90716 0.83734 1.42350 0.90662 1.44782 1.04216 1.01152 1.83486 1.21409 0.83644 0.94203 0.96525 1.22887 0.99173 0.95358 0.99723 1.22637 0.94570 0.97245 1.00619 1.21327 0.95412 0.86319 0.92818 0.93202 1.21559 0.94357 0.84225 0.98701 1.45559 1.50522 1.18571 1.21368 1.17385 0.78176 0.86091 0.81791 1.90997 1.64228 1.49538 1.40053 1.19737 1.17536 1.00156 0.96740 1.24564 0.92416 0.87991 0.99995 1.77550 1.23711 1.24031 0.89550 1.46366 1.33357 1.11150 1.12028 1.22644 0.92207 0.99533 0.87564 1.21520 1.02573 0.95318 0.96013 1.21869 0.91551 0.94018 0.99731 1.20470 1.04637 0.92150 0.93696 1.98493 1.85800 1.22022 1.92563 1.19133 0.96588 0.87602 0.94697 0.94402 0.93319 0.99585 0.91183 0.89962 0.91633 0.87527 0.94854 0.95058 0.75455 0.75089 0.76866 0.76484 0.80280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.13 10.36 21.65 0.22 -57.90 16 2 C -0.06 -3.72 5.48 84.86 0.47 -3.26 16 3 Si 0.97 47.70 29.55 68.60 2.03 49.73 16 4 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 5 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 6 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 7 C -0.23 -13.29 9.73 84.03 0.82 -12.48 16 8 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.61 -31.43 3.13 -668.26 -2.09 -33.52 16 10 C 0.17 8.30 5.54 86.86 0.48 8.78 16 11 C -0.13 -4.68 7.10 32.03 0.23 -4.45 16 12 C -0.11 -3.47 6.11 31.82 0.19 -3.27 16 13 C 0.15 5.82 3.22 45.34 0.15 5.97 16 14 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 15 C 0.14 5.55 5.11 86.38 0.44 6.00 16 16 N -0.71 -21.83 5.40 -467.17 -2.52 -24.35 16 17 C 0.58 19.68 7.78 86.41 0.67 20.35 16 18 O -0.57 -23.60 12.09 -4.40 -0.05 -23.66 16 19 C -0.33 -9.06 6.16 -19.90 -0.12 -9.18 16 20 C 0.13 2.70 11.44 85.42 0.98 3.68 16 21 N -0.33 -6.97 12.57 -56.62 -0.71 -7.68 16 22 N -0.26 -5.23 3.86 -187.20 -0.72 -5.95 16 23 C 0.11 1.01 11.17 83.30 0.93 1.94 16 24 C -0.13 -0.73 9.98 22.03 0.22 -0.51 16 25 C -0.05 -0.59 9.87 22.34 0.22 -0.37 16 26 C -0.08 -1.87 6.33 22.35 0.14 -1.73 16 27 Cl -0.02 -0.55 24.34 -2.72 -0.07 -0.61 16 28 C 0.14 3.63 6.74 39.52 0.27 3.89 16 29 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 30 H 0.05 2.74 6.51 -2.39 -0.02 2.72 16 31 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 32 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 33 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.06 2.02 7.76 -2.39 -0.02 2.00 16 35 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 36 H 0.03 1.50 8.02 -2.38 -0.02 1.48 16 37 H 0.03 1.48 7.84 -2.39 -0.02 1.47 16 38 H 0.41 9.17 7.22 -92.71 -0.67 8.50 16 39 H 0.23 2.80 7.49 -2.91 -0.02 2.78 16 40 H 0.21 0.33 8.06 -2.91 -0.02 0.30 16 41 H 0.22 -1.04 8.06 -2.91 -0.02 -1.07 16 42 H 0.18 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -84.52 360.23 2.56 -81.96 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: 0.40 Total: 6.65 kcal Atomic # 6 Polarization: 9.27 SS G_CDS: 6.08 Total: 15.35 kcal Atomic # 7 Polarization: -123.59 SS G_CDS: -5.82 Total: -129.41 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.05 Total: -23.66 kcal Atomic # 14 Polarization: 47.70 SS G_CDS: 2.03 Total: 49.73 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.07 Total: -0.61 kcal Total: -84.52 2.56 -81.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028011468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.128 kcal (2) G-P(sol) polarization free energy of solvation -84.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds