Wall clock time and date at job start Wed Apr 1 2020 04:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48504 * 109.47401 * 264.67542 * 3 2 1 5 5 H 1.48503 * 109.46799 * 24.67106 * 3 2 1 6 6 H 1.48502 * 109.47572 * 144.67377 * 3 2 1 7 7 C 1.38815 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00118 * 336.23760 * 7 2 1 9 9 N 1.36939 * 119.99751 * 156.24087 * 7 2 1 10 10 C 1.47428 * 125.64637 * 162.04915 * 9 7 2 11 11 C 1.54908 * 104.83339 * 155.90419 * 10 9 7 12 12 C 1.55152 * 101.58090 * 37.00906 * 11 10 9 13 13 H 1.09000 * 110.71881 * 83.03963 * 12 11 10 14 14 C 1.53002 * 110.72170 * 206.13480 * 12 11 10 15 15 N 1.46501 * 109.46998 * 182.56108 * 14 12 11 16 16 C 1.34779 * 119.99711 * 180.02562 * 15 14 12 17 17 O 1.21771 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.46283 * 119.99732 * 179.97438 * 16 15 14 19 19 N 1.34880 * 126.50028 * 359.97438 * 18 16 15 20 20 C 1.30188 * 109.73138 * 179.97438 * 19 18 16 21 21 N 1.36247 * 109.82152 * 0.02562 * 20 19 18 22 22 C 1.36577 * 132.76314 * 179.97438 * 21 20 19 23 23 C 1.35128 * 120.57925 * 180.02562 * 22 21 20 24 24 Cl 1.73600 * 119.79536 * 180.02562 * 23 22 21 25 25 C 1.40472 * 120.41288 * 359.97438 * 23 22 21 26 26 C 1.36321 * 119.55306 * 0.03426 * 25 23 22 27 27 C 1.37245 * 107.19375 * 359.97438 * 21 20 19 28 28 C 1.47321 * 125.61767 * 342.27041 * 9 7 2 29 29 H 0.97002 * 120.00239 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.36530 * 37.06633 * 10 9 7 31 31 H 1.08995 * 110.46057 * 274.79146 * 10 9 7 32 32 H 1.09007 * 110.99916 * 278.93896 * 11 10 9 33 33 H 1.08994 * 111.04066 * 155.10090 * 11 10 9 34 34 H 1.08996 * 109.46670 * 62.56463 * 14 12 11 35 35 H 1.08998 * 109.47184 * 302.56125 * 14 12 11 36 36 H 0.97004 * 120.00617 * 359.97438 * 15 14 12 37 37 H 1.08000 * 125.09255 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.71233 * 0.02562 * 22 21 20 39 39 H 1.07996 * 120.22149 * 180.02562 * 25 23 22 40 40 H 1.08000 * 120.39071 * 180.24801 * 26 25 23 41 41 H 1.08999 * 110.06357 * 61.68446 * 28 9 7 42 42 H 1.09001 * 109.84630 * 300.42300 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6102 1.9815 -1.3940 5 1 1.3958 2.6825 0.5844 6 1 3.4869 1.4753 0.8096 7 6 2.0102 -1.2022 -0.0005 8 1 1.5389 -2.0980 0.3759 9 7 3.2925 -1.2521 -0.4784 10 6 4.2678 -2.3249 -0.2111 11 6 5.2609 -2.2629 -1.3984 12 6 5.3570 -0.7341 -1.6445 13 1 6.0753 -0.2782 -0.9630 14 6 5.7331 -0.4424 -3.0986 15 7 5.8760 1.0036 -3.2854 16 6 6.2053 1.4974 -4.4955 17 8 6.3844 0.7417 -5.4333 18 6 6.3474 2.9413 -4.6821 19 7 6.1799 3.8924 -3.7405 20 6 6.3866 5.0676 -4.2611 21 7 6.7016 4.9395 -5.5805 22 6 7.0012 5.8485 -6.5548 23 6 7.2817 5.4411 -7.8123 24 17 7.6605 6.6140 -9.0347 25 6 7.2698 4.0743 -8.1362 26 6 6.9721 3.1574 -7.1723 27 6 6.6838 3.5988 -5.8735 28 6 3.9268 -0.2401 -1.3408 29 1 -0.4850 0.8400 0.0004 30 1 3.7685 -3.2935 -0.1844 31 1 4.7883 -2.1412 0.7287 32 1 4.8575 -2.7747 -2.2722 33 1 6.2304 -2.6755 -1.1196 34 1 4.9513 -0.8185 -3.7585 35 1 6.6764 -0.9344 -3.3357 36 1 5.7329 1.6057 -2.5385 37 1 6.3179 6.0039 -3.7273 38 1 7.0140 6.9022 -6.3182 39 1 7.4949 3.7521 -9.1421 40 1 6.9629 2.1029 -7.4055 41 1 3.9676 0.7188 -0.8243 42 1 3.3643 -0.1400 -2.2691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028551809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:00 Heat of formation + Delta-G solvation = 79.556403 kcal Electronic energy + Delta-G solvation = -27300.401577 eV Core-core repulsion = 23308.621686 eV Total energy + Delta-G solvation = -3991.779891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -43.31791 -39.50678 -38.36516 -37.85776 -36.87824 -34.63569 -33.91193 -32.51096 -31.24335 -30.50361 -29.14113 -28.39407 -25.87605 -24.57842 -24.19198 -22.99842 -22.86117 -20.68508 -20.21297 -19.95342 -18.60742 -17.52711 -17.06141 -16.80974 -16.56877 -16.44856 -16.15840 -15.71285 -15.04252 -14.86129 -14.80838 -14.33475 -13.65319 -13.58439 -13.41239 -13.30077 -13.20493 -12.74226 -12.65886 -12.42285 -11.92748 -11.73620 -11.71715 -11.51222 -11.24954 -11.17983 -10.91847 -10.88334 -10.67371 -10.51508 -10.17330 -10.00103 -9.81389 -9.72398 -9.28868 -8.94819 -8.57521 -8.02581 -7.01934 -5.90964 -3.18974 0.04982 0.43080 1.10658 2.03627 2.15798 2.65045 3.24160 3.40834 3.46345 3.51221 3.54651 3.79582 4.02505 4.05055 4.27536 4.33929 4.59512 4.69780 4.82563 4.95245 5.09891 5.13488 5.15968 5.30942 5.34916 5.49359 5.53252 5.69996 5.80824 5.87520 5.88657 5.94389 6.09440 6.14048 6.32766 6.45972 6.48675 6.54167 6.65920 6.80592 6.83360 7.17757 7.66132 7.75636 8.26636 8.35193 8.87701 9.73622 10.22844 11.25519 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.017064 B = 0.002415 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.485963 B =11589.083966 C =12628.310763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.020 3.980 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.305 1.305 6 H -0.280 1.280 7 C -0.242 4.242 8 H 0.093 0.907 9 N -0.610 5.610 10 C 0.133 3.867 11 C -0.121 4.121 12 C -0.116 4.116 13 H 0.081 0.919 14 C 0.133 3.867 15 N -0.710 5.710 16 C 0.604 3.396 17 O -0.548 6.548 18 C -0.045 4.045 19 N -0.414 5.414 20 C 0.160 3.840 21 N -0.363 5.363 22 C 0.064 3.936 23 C -0.048 4.048 24 Cl -0.035 7.035 25 C -0.114 4.114 26 C -0.046 4.046 27 C 0.068 3.932 28 C 0.124 3.876 29 H 0.262 0.738 30 H 0.050 0.950 31 H 0.024 0.976 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.409 0.591 37 H 0.223 0.777 38 H 0.179 0.821 39 H 0.153 0.847 40 H 0.170 0.830 41 H 0.025 0.975 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.748 13.098 -16.595 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.179 4.179 3 Si 0.719 3.281 4 H -0.211 1.211 5 H -0.234 1.234 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.110 0.890 9 N -0.337 5.337 10 C 0.007 3.993 11 C -0.160 4.160 12 C -0.136 4.136 13 H 0.099 0.901 14 C 0.010 3.990 15 N -0.360 5.360 16 C 0.390 3.610 17 O -0.426 6.426 18 C -0.180 4.180 19 N -0.128 5.128 20 C -0.117 4.117 21 N -0.035 5.035 22 C -0.059 4.059 23 C -0.078 4.078 24 Cl -0.007 7.007 25 C -0.136 4.136 26 C -0.065 4.065 27 C -0.044 4.044 28 C 0.000 4.000 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.042 0.958 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.245 0.755 37 H 0.239 0.761 38 H 0.196 0.804 39 H 0.170 0.830 40 H 0.188 0.812 41 H 0.042 0.958 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 19.404 12.648 -16.351 28.352 hybrid contribution 0.510 1.969 -0.354 2.064 sum 19.915 14.617 -16.705 29.821 Atomic orbital electron populations 1.69863 1.05555 1.26528 1.53201 1.24962 0.95156 0.97438 1.00304 0.86900 0.78791 0.84654 0.77776 1.21131 1.23359 1.20673 1.18663 0.85246 0.95599 1.37375 0.88980 1.44866 1.10868 1.22187 1.55821 1.21608 0.90162 0.93054 0.94473 1.22725 0.99461 0.93806 0.99966 1.22461 0.98327 0.97969 0.94821 0.90112 1.21462 1.01678 0.79448 0.96453 1.45825 1.69478 1.09084 1.11593 1.16418 0.76861 0.84570 0.83104 1.90796 1.52498 1.58567 1.40732 1.20588 1.14357 0.94112 0.88932 1.70148 1.14051 0.98147 1.30480 1.25215 1.08189 0.99451 0.78853 1.42951 1.43690 1.06719 1.10114 1.21335 1.02148 0.95614 0.86767 1.20225 1.05823 0.91721 0.90052 1.98413 1.92598 1.56974 1.52677 1.21111 1.01254 0.89840 1.01364 1.20802 0.95376 1.02134 0.88223 1.19318 1.05948 0.82867 0.96299 1.21762 0.90712 0.92797 0.94758 0.92786 0.93189 0.95805 0.90867 0.91232 0.90749 0.91126 0.75513 0.76086 0.80404 0.82979 0.81222 0.95769 0.93956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.62 13.97 55.49 0.78 -27.85 16 2 C 0.02 0.59 5.43 -17.43 -0.09 0.50 16 3 Si 0.89 23.36 24.38 -169.99 -4.14 19.21 16 4 H -0.28 -7.28 6.83 56.52 0.39 -6.90 16 5 H -0.31 -8.12 7.11 56.52 0.40 -7.72 16 6 H -0.28 -7.23 6.87 56.52 0.39 -6.84 16 7 C -0.24 -7.02 10.57 -15.06 -0.16 -7.17 16 8 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 9 N -0.61 -15.03 3.22 -169.83 -0.55 -15.58 16 10 C 0.13 2.59 7.23 -2.53 -0.02 2.58 16 11 C -0.12 -1.87 6.54 -24.59 -0.16 -2.03 16 12 C -0.12 -1.93 2.98 -88.79 -0.26 -2.19 16 13 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 14 C 0.13 2.03 5.00 -4.04 -0.02 2.01 16 15 N -0.71 -11.18 5.43 -61.74 -0.33 -11.52 16 16 C 0.60 9.71 7.77 -13.03 -0.10 9.61 16 17 O -0.55 -9.52 15.75 5.13 0.08 -9.44 16 18 C -0.05 -0.65 7.05 -82.57 -0.58 -1.23 16 19 N -0.41 -5.60 10.90 -10.53 -0.11 -5.71 16 20 C 0.16 1.54 12.73 -89.52 -1.14 0.40 16 21 N -0.36 -3.43 2.94 -62.15 -0.18 -3.61 16 22 C 0.06 0.43 10.70 -16.54 -0.18 0.25 16 23 C -0.05 -0.33 6.28 -39.85 -0.25 -0.58 16 24 Cl -0.04 -0.20 28.93 -51.86 -1.50 -1.70 16 25 C -0.11 -0.84 9.87 -39.43 -0.39 -1.23 16 26 C -0.05 -0.45 9.73 -39.55 -0.38 -0.83 16 27 C 0.07 0.81 6.72 -83.99 -0.56 0.24 16 28 C 0.12 2.75 4.55 -2.90 -0.01 2.73 16 29 H 0.26 7.86 8.31 -40.82 -0.34 7.52 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 1.11 8.05 -51.93 -0.42 0.69 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.22 8.00 -51.93 -0.42 0.81 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.41 6.44 8.10 -40.82 -0.33 6.11 16 37 H 0.22 1.12 8.06 -52.49 -0.42 0.70 16 38 H 0.18 0.57 8.06 -52.49 -0.42 0.14 16 39 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.17 1.68 7.17 -52.49 -0.38 1.30 16 41 H 0.03 0.58 3.55 -51.93 -0.18 0.40 16 42 H 0.04 1.00 7.73 -51.93 -0.40 0.60 16 LS Contribution 363.33 15.07 5.48 5.48 Total: -1.00 -35.82 363.33 -9.91 -45.72 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -5.10 Total: 1.95 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -4.32 Total: 3.05 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: -0.40 Total: -64.26 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.08 Total: -9.44 kcal Atomic # 14 Polarization: 23.36 SS G_CDS: -4.14 Total: 19.21 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.50 Total: -1.70 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.82 -9.91 -45.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028551809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.279 kcal (2) G-P(sol) polarization free energy of solvation -35.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds