Wall clock time and date at job start Wed Apr 1 2020 04:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86797 * 120.00136 * 2 1 4 4 H 1.48504 * 109.47401 * 264.67542 * 3 2 1 5 5 H 1.48503 * 109.46799 * 24.67106 * 3 2 1 6 6 H 1.48502 * 109.47572 * 144.67377 * 3 2 1 7 7 C 1.38815 * 120.00035 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00118 * 336.23760 * 7 2 1 9 9 N 1.36939 * 119.99751 * 156.24087 * 7 2 1 10 10 C 1.47428 * 125.64637 * 162.04915 * 9 7 2 11 11 C 1.54908 * 104.83339 * 155.90419 * 10 9 7 12 12 C 1.55152 * 101.58090 * 37.00906 * 11 10 9 13 13 H 1.09000 * 110.71881 * 83.03963 * 12 11 10 14 14 C 1.53002 * 110.72170 * 206.13480 * 12 11 10 15 15 N 1.46501 * 109.46998 * 182.56108 * 14 12 11 16 16 C 1.34779 * 119.99711 * 180.02562 * 15 14 12 17 17 O 1.21771 * 120.00037 * 359.97438 * 16 15 14 18 18 C 1.46283 * 119.99732 * 179.97438 * 16 15 14 19 19 N 1.34880 * 126.50028 * 359.97438 * 18 16 15 20 20 C 1.30188 * 109.73138 * 179.97438 * 19 18 16 21 21 N 1.36247 * 109.82152 * 0.02562 * 20 19 18 22 22 C 1.36577 * 132.76314 * 179.97438 * 21 20 19 23 23 C 1.35128 * 120.57925 * 180.02562 * 22 21 20 24 24 Cl 1.73600 * 119.79536 * 180.02562 * 23 22 21 25 25 C 1.40472 * 120.41288 * 359.97438 * 23 22 21 26 26 C 1.36321 * 119.55306 * 0.03426 * 25 23 22 27 27 C 1.37245 * 107.19375 * 359.97438 * 21 20 19 28 28 C 1.47321 * 125.61767 * 342.27041 * 9 7 2 29 29 H 0.97002 * 120.00239 * 359.97438 * 1 2 3 30 30 H 1.09000 * 110.36530 * 37.06633 * 10 9 7 31 31 H 1.08995 * 110.46057 * 274.79146 * 10 9 7 32 32 H 1.09007 * 110.99916 * 278.93896 * 11 10 9 33 33 H 1.08994 * 111.04066 * 155.10090 * 11 10 9 34 34 H 1.08996 * 109.46670 * 62.56463 * 14 12 11 35 35 H 1.08998 * 109.47184 * 302.56125 * 14 12 11 36 36 H 0.97004 * 120.00617 * 359.97438 * 15 14 12 37 37 H 1.08000 * 125.09255 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.71233 * 0.02562 * 22 21 20 39 39 H 1.07996 * 120.22149 * 180.02562 * 25 23 22 40 40 H 1.08000 * 120.39071 * 180.24801 * 26 25 23 41 41 H 1.08999 * 110.06357 * 61.68446 * 28 9 7 42 42 H 1.09001 * 109.84630 * 300.42300 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6102 1.9815 -1.3940 5 1 1.3958 2.6825 0.5844 6 1 3.4869 1.4753 0.8096 7 6 2.0102 -1.2022 -0.0005 8 1 1.5389 -2.0980 0.3759 9 7 3.2925 -1.2521 -0.4784 10 6 4.2678 -2.3249 -0.2111 11 6 5.2609 -2.2629 -1.3984 12 6 5.3570 -0.7341 -1.6445 13 1 6.0753 -0.2782 -0.9630 14 6 5.7331 -0.4424 -3.0986 15 7 5.8760 1.0036 -3.2854 16 6 6.2053 1.4974 -4.4955 17 8 6.3844 0.7417 -5.4333 18 6 6.3474 2.9413 -4.6821 19 7 6.1799 3.8924 -3.7405 20 6 6.3866 5.0676 -4.2611 21 7 6.7016 4.9395 -5.5805 22 6 7.0012 5.8485 -6.5548 23 6 7.2817 5.4411 -7.8123 24 17 7.6605 6.6140 -9.0347 25 6 7.2698 4.0743 -8.1362 26 6 6.9721 3.1574 -7.1723 27 6 6.6838 3.5988 -5.8735 28 6 3.9268 -0.2401 -1.3408 29 1 -0.4850 0.8400 0.0004 30 1 3.7685 -3.2935 -0.1844 31 1 4.7883 -2.1412 0.7287 32 1 4.8575 -2.7747 -2.2722 33 1 6.2304 -2.6755 -1.1196 34 1 4.9513 -0.8185 -3.7585 35 1 6.6764 -0.9344 -3.3357 36 1 5.7329 1.6057 -2.5385 37 1 6.3179 6.0039 -3.7273 38 1 7.0140 6.9022 -6.3182 39 1 7.4949 3.7521 -9.1421 40 1 6.9629 2.1029 -7.4055 41 1 3.9676 0.7188 -0.8243 42 1 3.3643 -0.1400 -2.2691 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028551809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:59 Heat of formation + Delta-G solvation = 55.835830 kcal Electronic energy + Delta-G solvation = -27301.430178 eV Core-core repulsion = 23308.621686 eV Total energy + Delta-G solvation = -3992.808492 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -44.06425 -40.69682 -39.45536 -38.95213 -37.44323 -36.04264 -34.66070 -34.45848 -32.28123 -31.89771 -30.43314 -29.52607 -27.44377 -25.73934 -25.21771 -24.20001 -23.59775 -22.15454 -21.71822 -21.14034 -19.46828 -18.98601 -18.25010 -17.81819 -17.75150 -17.33211 -17.25078 -16.86364 -16.34775 -15.91532 -15.67406 -15.53018 -15.38546 -15.03419 -14.69357 -14.36918 -14.22017 -14.06298 -13.94401 -13.46192 -13.23709 -13.21896 -13.02741 -12.66344 -12.43965 -12.42035 -12.22373 -12.10680 -11.91377 -11.85078 -11.74719 -11.59506 -11.25044 -11.15324 -10.77752 -10.38869 -10.16263 -9.08746 -8.76728 -8.21436 -5.44971 -0.61464 -0.27480 0.55423 1.13585 1.28920 1.33591 1.44256 1.48965 1.98344 2.17844 2.38847 2.43767 2.99032 3.21238 3.22356 3.30317 3.49290 3.58416 3.65339 3.71286 3.82047 3.86334 4.06387 4.10128 4.36700 4.46861 4.53957 4.56388 4.64718 4.74489 4.76175 4.85671 4.86681 5.03663 5.05951 5.10024 5.16726 5.19798 5.36819 5.45143 5.67207 5.84099 6.07671 6.28730 6.58362 6.74554 7.11588 7.52537 8.09772 8.98842 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.017064 B = 0.002415 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.485963 B =11589.083966 C =12628.310763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.955 5.955 2 C -0.041 4.041 3 Si 0.953 3.047 4 H -0.279 1.279 5 H -0.309 1.309 6 H -0.269 1.269 7 C -0.234 4.234 8 H 0.063 0.937 9 N -0.631 5.631 10 C 0.122 3.878 11 C -0.105 4.105 12 C -0.100 4.100 13 H 0.102 0.898 14 C 0.140 3.860 15 N -0.714 5.714 16 C 0.600 3.400 17 O -0.573 6.573 18 C -0.100 4.100 19 N -0.449 5.449 20 C 0.171 3.829 21 N -0.364 5.364 22 C 0.080 3.920 23 C -0.061 4.061 24 Cl -0.019 7.019 25 C -0.082 4.082 26 C -0.083 4.083 27 C 0.071 3.929 28 C 0.121 3.879 29 H 0.262 0.738 30 H 0.048 0.952 31 H 0.037 0.963 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.408 0.592 37 H 0.267 0.733 38 H 0.219 0.781 39 H 0.176 0.824 40 H 0.160 0.840 41 H 0.013 0.987 42 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.930 15.503 -17.936 32.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.235 4.235 3 Si 0.784 3.216 4 H -0.206 1.206 5 H -0.238 1.238 6 H -0.195 1.195 7 C -0.363 4.363 8 H 0.081 0.919 9 N -0.358 5.358 10 C -0.002 4.002 11 C -0.143 4.143 12 C -0.119 4.119 13 H 0.120 0.880 14 C 0.017 3.983 15 N -0.364 5.364 16 C 0.388 3.612 17 O -0.454 6.454 18 C -0.232 4.232 19 N -0.163 5.163 20 C -0.106 4.106 21 N -0.035 5.035 22 C -0.043 4.043 23 C -0.091 4.091 24 Cl 0.010 6.990 25 C -0.104 4.104 26 C -0.102 4.102 27 C -0.043 4.043 28 C -0.004 4.004 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.055 0.945 32 H 0.094 0.906 33 H 0.133 0.867 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.244 0.756 37 H 0.282 0.718 38 H 0.236 0.764 39 H 0.194 0.806 40 H 0.177 0.823 41 H 0.031 0.969 42 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 22.634 15.019 -17.682 32.412 hybrid contribution -0.446 1.293 -0.095 1.371 sum 22.188 16.312 -17.777 32.778 Atomic orbital electron populations 1.69984 1.07119 1.27170 1.55898 1.25612 0.95840 1.00767 1.01322 0.85834 0.77522 0.80313 0.77962 1.20619 1.23777 1.19520 1.18659 0.87281 0.94527 1.35838 0.91948 1.45035 1.10487 1.24127 1.56105 1.21893 0.90091 0.91304 0.96903 1.22707 1.00382 0.93069 0.98183 1.22384 0.94910 0.98664 0.95981 0.88014 1.21375 1.02119 0.79703 0.95129 1.45850 1.69732 1.09107 1.11690 1.16733 0.76169 0.85594 0.82676 1.90754 1.53882 1.59493 1.41286 1.20336 1.18779 0.93476 0.90568 1.70037 1.15528 0.99333 1.31414 1.26070 1.05908 0.99810 0.78824 1.43117 1.43486 1.06195 1.10691 1.22040 0.99419 0.96802 0.85993 1.20322 1.06214 0.91811 0.90735 1.98429 1.92465 1.56151 1.51959 1.21436 0.97401 0.89890 1.01670 1.20744 0.98778 1.02353 0.88371 1.19464 1.04607 0.83975 0.96264 1.21814 0.93702 0.92004 0.92875 0.92945 0.93362 0.94547 0.90600 0.86747 0.92518 0.88863 0.75632 0.71764 0.76413 0.80611 0.82282 0.96948 0.96460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -62.49 13.97 21.65 0.30 -62.19 16 2 C -0.04 -2.52 5.43 84.86 0.46 -2.06 16 3 Si 0.95 49.73 24.38 68.60 1.67 51.40 16 4 H -0.28 -14.17 6.83 99.48 0.68 -13.49 16 5 H -0.31 -16.13 7.11 99.48 0.71 -15.43 16 6 H -0.27 -13.39 6.87 99.48 0.68 -12.71 16 7 C -0.23 -14.01 10.57 84.03 0.89 -13.12 16 8 H 0.06 3.99 8.06 -2.91 -0.02 3.97 16 9 N -0.63 -31.17 3.22 -691.22 -2.22 -33.39 16 10 C 0.12 4.61 7.23 86.85 0.63 5.24 16 11 C -0.10 -2.96 6.54 31.98 0.21 -2.75 16 12 C -0.10 -3.12 2.98 -9.61 -0.03 -3.15 16 13 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 14 C 0.14 4.15 5.00 86.38 0.43 4.58 16 15 N -0.71 -22.57 5.43 -467.41 -2.54 -25.11 16 16 C 0.60 19.83 7.77 86.33 0.67 20.50 16 17 O -0.57 -20.65 15.75 -4.58 -0.07 -20.72 16 18 C -0.10 -2.92 7.05 41.24 0.29 -2.63 16 19 N -0.45 -11.87 10.90 -187.23 -2.04 -13.92 16 20 C 0.17 2.91 12.73 179.96 2.29 5.20 16 21 N -0.36 -6.01 2.94 -350.53 -1.03 -7.04 16 22 C 0.08 0.76 10.70 83.24 0.89 1.65 16 23 C -0.06 -0.63 6.28 22.10 0.14 -0.49 16 24 Cl -0.02 -0.15 28.93 -2.72 -0.08 -0.23 16 25 C -0.08 -1.03 9.87 22.37 0.22 -0.80 16 26 C -0.08 -1.59 9.73 22.29 0.22 -1.38 16 27 C 0.07 1.65 6.72 39.24 0.26 1.92 16 28 C 0.12 5.29 4.55 86.67 0.39 5.68 16 29 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 2.12 8.05 -2.38 -0.02 2.11 16 33 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.06 1.88 8.00 -2.39 -0.02 1.86 16 35 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 36 H 0.41 12.87 8.10 -92.71 -0.75 12.12 16 37 H 0.27 1.61 8.06 -2.91 -0.02 1.58 16 38 H 0.22 0.22 8.06 -2.91 -0.02 0.20 16 39 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 40 H 0.16 3.32 7.17 -2.91 -0.02 3.30 16 41 H 0.01 0.61 3.55 -2.39 -0.01 0.60 16 42 H 0.02 0.84 7.73 -2.39 -0.02 0.82 16 Total: -1.00 -82.83 363.33 2.23 -80.60 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: 0.27 Total: 12.20 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: 7.97 Total: 18.40 kcal Atomic # 7 Polarization: -134.12 SS G_CDS: -7.53 Total: -141.65 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.07 Total: -20.72 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 1.67 Total: 51.40 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.08 Total: -0.23 kcal Total: -82.83 2.23 -80.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028551809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.438 kcal (2) G-P(sol) polarization free energy of solvation -82.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds