Wall clock time and date at job start Wed Apr 1 2020 04:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86804 * 119.99812 * 2 1 4 4 H 1.48498 * 109.46813 * 269.99797 * 3 2 1 5 5 H 1.48497 * 109.47251 * 29.99764 * 3 2 1 6 6 H 1.48497 * 109.46897 * 149.99926 * 3 2 1 7 7 C 1.38795 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99889 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00165 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00040 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47100 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99972 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00120 * 180.27444 * 11 10 9 14 14 C 1.46503 * 120.00001 * 179.72217 * 13 11 10 15 15 C 1.53006 * 109.46950 * 182.72496 * 14 13 11 16 16 N 1.46501 * 112.84880 * 293.95254 * 15 14 13 17 17 C 1.34782 * 120.00079 * 294.95146 * 16 15 14 18 18 O 1.21287 * 119.99731 * 354.96930 * 17 16 15 19 19 C 1.50696 * 120.00238 * 174.97664 * 17 16 15 20 20 H 1.09004 * 115.54565 * 325.66278 * 19 17 16 21 21 C 1.52992 * 117.50209 * 111.37418 * 19 17 16 22 22 C 1.52995 * 60.00201 * 107.49029 * 21 19 17 23 23 F 1.39901 * 117.49980 * 252.51372 * 22 21 19 24 24 F 1.39898 * 117.51739 * 107.48037 * 22 21 19 25 25 C 1.53778 * 113.61481 * 162.75981 * 15 14 13 26 26 C 1.53956 * 87.01716 * 220.04637 * 25 15 14 27 27 C 1.53772 * 113.61645 * 65.14927 * 15 14 13 28 28 H 0.97001 * 119.99957 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47655 * 59.99914 * 10 9 7 30 30 H 1.09004 * 109.47220 * 299.99715 * 10 9 7 31 31 H 0.97002 * 119.99918 * 359.71884 * 13 11 10 32 32 H 1.08997 * 109.47364 * 302.71949 * 14 13 11 33 33 H 1.08996 * 109.47166 * 62.72334 * 14 13 11 34 34 H 0.96993 * 120.00162 * 114.94252 * 16 15 14 35 35 H 1.08998 * 117.50106 * 214.98129 * 21 19 17 36 36 H 1.09000 * 117.49777 * 359.97438 * 21 19 17 37 37 H 1.09007 * 113.61137 * 334.56385 * 25 15 14 38 38 H 1.09000 * 113.61608 * 105.46839 * 25 15 14 39 39 H 1.09003 * 113.53587 * 270.80388 * 26 25 15 40 40 H 1.09005 * 113.73793 * 139.94278 * 26 25 15 41 41 H 1.09003 * 113.61720 * 254.53276 * 27 15 14 42 42 H 1.09000 * 113.61464 * 25.42943 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3026 -0.0001 12 8 0.7911 -5.5022 0.0000 13 7 2.8442 -6.3430 0.0054 14 6 2.3304 -7.7150 0.0109 15 6 3.5009 -8.6976 0.0850 16 7 4.3444 -8.6690 -1.1124 17 6 3.8414 -9.0587 -2.3006 18 8 2.7209 -9.5189 -2.3631 19 6 4.6711 -8.9230 -3.5512 20 1 5.3335 -8.0580 -3.5843 21 6 5.1558 -10.2105 -4.2207 22 6 4.0438 -9.3832 -4.8686 23 9 2.7438 -9.8978 -4.8200 24 9 4.3643 -8.6616 -6.0235 25 6 3.0887 -10.1156 0.5143 26 6 4.3761 -10.1476 1.3580 27 6 4.2943 -8.6126 1.3995 28 1 -0.4850 0.8401 -0.0004 29 1 3.1246 -3.7313 0.8905 30 1 3.1245 -3.7313 -0.8895 31 1 3.8010 -6.1834 0.0056 32 1 1.6819 -7.8567 0.8754 33 1 1.7629 -7.8941 -0.9022 34 1 5.2648 -8.3694 -1.0503 35 1 6.1373 -10.1928 -4.6942 36 1 4.8749 -11.1558 -3.7563 37 1 2.1758 -10.1435 1.1094 38 1 3.0838 -10.8355 -0.3041 39 1 5.2430 -10.5242 0.8151 40 1 4.2501 -10.6181 2.3331 41 1 5.2615 -8.1208 1.2948 42 1 3.7118 -8.2288 2.2371 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001062579176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:45 Heat of formation + Delta-G solvation = -115.249379 kcal Electronic energy + Delta-G solvation = -28152.656075 eV Core-core repulsion = 23703.783291 eV Total energy + Delta-G solvation = -4448.872783 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -48.98127 -47.62365 -41.12993 -39.17926 -38.51493 -35.97268 -34.21506 -33.56206 -32.42545 -29.98457 -27.50493 -26.21547 -25.53182 -25.24645 -23.08106 -22.72943 -20.97049 -20.31229 -19.63044 -18.69253 -17.92590 -17.43044 -16.74650 -16.56044 -16.34575 -16.13061 -15.80208 -15.39495 -15.08577 -14.81079 -14.80259 -14.54632 -14.24887 -13.95805 -13.94193 -13.79436 -13.67301 -13.18763 -13.04472 -12.85825 -12.76311 -12.61742 -12.19937 -11.82715 -11.67590 -11.36603 -11.22940 -11.06406 -11.02408 -10.81425 -10.76463 -10.60416 -10.11553 -9.82503 -9.54143 -9.29856 -9.06813 -8.84589 -8.22568 -6.49423 -6.21229 -3.91875 1.82445 2.32835 2.59474 2.86991 3.02737 3.12630 3.22191 3.27589 3.31279 3.65984 3.69185 3.79961 4.02751 4.15819 4.20482 4.24940 4.34451 4.39628 4.47554 4.80394 4.95484 5.01568 5.13726 5.17948 5.21972 5.25073 5.36687 5.42420 5.48691 5.58124 5.63756 5.68129 5.83442 5.87903 5.94303 6.12239 6.22350 6.60862 6.99074 7.59309 7.70622 7.76368 8.35151 8.63645 9.23799 10.86179 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.002537 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.840055 B =11036.065172 C =12513.817842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.152 4.152 11 C 0.530 3.470 12 O -0.515 6.515 13 N -0.735 5.735 14 C 0.123 3.877 15 C 0.139 3.861 16 N -0.703 5.703 17 C 0.545 3.455 18 O -0.505 6.505 19 C -0.199 4.199 20 H 0.150 0.850 21 C -0.148 4.148 22 C 0.233 3.767 23 F -0.136 7.136 24 F -0.155 7.155 25 C -0.131 4.131 26 C -0.140 4.140 27 C -0.134 4.134 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.394 0.606 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.404 0.596 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.820 -24.307 -2.473 30.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.303 4.303 11 C 0.316 3.684 12 O -0.389 6.389 13 N -0.389 5.389 14 C -0.002 4.002 15 C 0.053 3.947 16 N -0.356 5.356 17 C 0.329 3.671 18 O -0.378 6.378 19 C -0.221 4.221 20 H 0.168 0.832 21 C -0.187 4.187 22 C 0.196 3.804 23 F -0.117 7.117 24 F -0.135 7.135 25 C -0.170 4.170 26 C -0.177 4.177 27 C -0.172 4.172 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.227 0.773 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.239 0.761 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.113 0.887 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.752 -24.851 -2.553 29.012 hybrid contribution 2.840 1.744 -0.217 3.340 sum 17.592 -23.107 -2.770 29.173 Atomic orbital electron populations 1.70023 1.05953 1.27457 1.46804 1.24997 0.95027 0.99028 0.94555 0.86166 0.79381 0.81588 0.78343 1.20274 1.20746 1.19715 1.22862 0.94873 0.91693 1.58989 0.90975 1.85446 1.04874 0.96260 1.96694 1.23517 1.06556 0.95468 1.04738 1.20312 0.86568 0.86239 0.75294 1.90718 1.15352 1.85550 1.47272 1.45875 1.09623 1.05347 1.78093 1.21536 0.94862 0.80155 1.03695 1.21623 0.91640 0.96808 0.84671 1.45510 1.15417 1.67971 1.06670 1.19183 0.86645 0.77962 0.83275 1.90835 1.18706 1.42465 1.85833 1.23658 1.03411 1.02611 0.92409 0.83208 1.24281 0.99188 0.95806 0.99388 1.19415 0.81255 0.97116 0.82643 1.93150 1.36210 1.86129 1.96165 1.93071 1.92112 1.78231 1.50079 1.23205 0.98460 0.95325 0.99981 1.22890 0.98229 0.95883 1.00716 1.23230 1.00579 0.97282 0.96093 0.92170 0.89293 0.89427 0.77288 0.90357 0.90433 0.76122 0.84851 0.85392 0.88703 0.90255 0.90190 0.90814 0.90608 0.87982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.22 55.49 0.73 -25.61 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.54 -15.32 9.50 30.94 0.29 -15.02 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 11 C 0.53 10.06 7.85 -10.99 -0.09 9.97 16 12 O -0.52 -12.13 15.86 5.55 0.09 -12.04 16 13 N -0.74 -9.73 5.43 -60.29 -0.33 -10.06 16 14 C 0.12 1.53 4.99 -4.04 -0.02 1.51 16 15 C 0.14 1.13 0.50 -131.01 -0.07 1.07 16 16 N -0.70 -4.72 5.15 -46.86 -0.24 -4.96 16 17 C 0.54 5.11 7.13 -10.98 -0.08 5.03 16 18 O -0.50 -6.94 12.99 5.55 0.07 -6.86 16 19 C -0.20 -1.35 6.18 -91.78 -0.57 -1.92 16 20 H 0.15 0.64 8.14 -51.93 -0.42 0.21 16 21 C -0.15 -0.71 10.20 -26.74 -0.27 -0.98 16 22 C 0.23 2.16 5.19 -26.73 -0.14 2.03 16 23 F -0.14 -1.76 15.71 2.25 0.04 -1.73 16 24 F -0.15 -1.57 17.60 2.25 0.04 -1.53 16 25 C -0.13 -1.03 6.97 -25.83 -0.18 -1.21 16 26 C -0.14 -0.76 8.00 -25.83 -0.21 -0.97 16 27 C -0.13 -0.78 7.16 -25.93 -0.19 -0.97 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 30 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 31 H 0.39 3.91 8.40 -40.82 -0.34 3.57 16 32 H 0.08 1.02 8.06 -51.93 -0.42 0.60 16 33 H 0.08 1.24 6.91 -51.93 -0.36 0.88 16 34 H 0.40 1.41 8.66 -40.82 -0.35 1.06 16 35 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.09 0.75 8.04 -51.93 -0.42 0.34 16 38 H 0.08 0.73 7.27 -51.93 -0.38 0.35 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.08 0.33 8.09 -51.93 -0.42 -0.09 16 42 H 0.10 0.67 8.10 -51.93 -0.42 0.25 16 LS Contribution 379.35 15.07 5.72 5.72 Total: -1.00 -38.22 379.35 -8.11 -46.33 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -5.61 Total: 0.50 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -1.38 Total: -2.31 kcal Atomic # 7 Polarization: -40.79 SS G_CDS: 0.17 Total: -40.63 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.16 Total: -18.90 kcal Atomic # 9 Polarization: -3.33 SS G_CDS: 0.08 Total: -3.26 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -38.22 -8.11 -46.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062579176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.915 kcal (2) G-P(sol) polarization free energy of solvation -38.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds