Wall clock time and date at job start Wed Apr 1 2020 04:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86804 * 119.99812 * 2 1 4 4 H 1.48498 * 109.46813 * 269.99797 * 3 2 1 5 5 H 1.48497 * 109.47251 * 29.99764 * 3 2 1 6 6 H 1.48497 * 109.46897 * 149.99926 * 3 2 1 7 7 C 1.38795 * 119.99989 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99889 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00165 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00040 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47100 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99972 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00120 * 180.27444 * 11 10 9 14 14 C 1.46503 * 120.00001 * 179.72217 * 13 11 10 15 15 C 1.53006 * 109.46950 * 182.72496 * 14 13 11 16 16 N 1.46501 * 112.84880 * 293.95254 * 15 14 13 17 17 C 1.34782 * 120.00079 * 294.95146 * 16 15 14 18 18 O 1.21287 * 119.99731 * 354.96930 * 17 16 15 19 19 C 1.50696 * 120.00238 * 174.97664 * 17 16 15 20 20 H 1.09004 * 115.54565 * 325.66278 * 19 17 16 21 21 C 1.52992 * 117.50209 * 111.37418 * 19 17 16 22 22 C 1.52995 * 60.00201 * 107.49029 * 21 19 17 23 23 F 1.39901 * 117.49980 * 252.51372 * 22 21 19 24 24 F 1.39898 * 117.51739 * 107.48037 * 22 21 19 25 25 C 1.53778 * 113.61481 * 162.75981 * 15 14 13 26 26 C 1.53956 * 87.01716 * 220.04637 * 25 15 14 27 27 C 1.53772 * 113.61645 * 65.14927 * 15 14 13 28 28 H 0.97001 * 119.99957 * 0.02562 * 1 2 3 29 29 H 1.08999 * 109.47655 * 59.99914 * 10 9 7 30 30 H 1.09004 * 109.47220 * 299.99715 * 10 9 7 31 31 H 0.97002 * 119.99918 * 359.71884 * 13 11 10 32 32 H 1.08997 * 109.47364 * 302.71949 * 14 13 11 33 33 H 1.08996 * 109.47166 * 62.72334 * 14 13 11 34 34 H 0.96993 * 120.00162 * 114.94252 * 16 15 14 35 35 H 1.08998 * 117.50106 * 214.98129 * 21 19 17 36 36 H 1.09000 * 117.49777 * 359.97438 * 21 19 17 37 37 H 1.09007 * 113.61137 * 334.56385 * 25 15 14 38 38 H 1.09000 * 113.61608 * 105.46839 * 25 15 14 39 39 H 1.09003 * 113.53587 * 270.80388 * 26 25 15 40 40 H 1.09005 * 113.73793 * 139.94278 * 26 25 15 41 41 H 1.09003 * 113.61720 * 254.53276 * 27 15 14 42 42 H 1.09000 * 113.61464 * 25.42943 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3026 -0.0001 12 8 0.7911 -5.5022 0.0000 13 7 2.8442 -6.3430 0.0054 14 6 2.3304 -7.7150 0.0109 15 6 3.5009 -8.6976 0.0850 16 7 4.3444 -8.6690 -1.1124 17 6 3.8414 -9.0587 -2.3006 18 8 2.7209 -9.5189 -2.3631 19 6 4.6711 -8.9230 -3.5512 20 1 5.3335 -8.0580 -3.5843 21 6 5.1558 -10.2105 -4.2207 22 6 4.0438 -9.3832 -4.8686 23 9 2.7438 -9.8978 -4.8200 24 9 4.3643 -8.6616 -6.0235 25 6 3.0887 -10.1156 0.5143 26 6 4.3761 -10.1476 1.3580 27 6 4.2943 -8.6126 1.3995 28 1 -0.4850 0.8401 -0.0004 29 1 3.1246 -3.7313 0.8905 30 1 3.1245 -3.7313 -0.8895 31 1 3.8010 -6.1834 0.0056 32 1 1.6819 -7.8567 0.8754 33 1 1.7629 -7.8941 -0.9022 34 1 5.2648 -8.3694 -1.0503 35 1 6.1373 -10.1928 -4.6942 36 1 4.8749 -11.1558 -3.7563 37 1 2.1758 -10.1435 1.1094 38 1 3.0838 -10.8355 -0.3041 39 1 5.2430 -10.5242 0.8151 40 1 4.2501 -10.6181 2.3331 41 1 5.2615 -8.1208 1.2948 42 1 3.7118 -8.2288 2.2371 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001062579176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:40:45 Heat of formation + Delta-G solvation = -144.220627 kcal Electronic energy + Delta-G solvation = -28153.912363 eV Core-core repulsion = 23703.783291 eV Total energy + Delta-G solvation = -4450.129071 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.70220 -48.39230 -41.87924 -40.46430 -39.40091 -36.58452 -35.51102 -34.58559 -34.28349 -31.47244 -28.60758 -27.62580 -26.79186 -25.99551 -23.68130 -23.42397 -21.89624 -21.48437 -20.34366 -19.84881 -19.36137 -18.13831 -17.90759 -17.59239 -17.30571 -16.96020 -16.88174 -16.78979 -16.37239 -16.23948 -15.77837 -15.47328 -15.28674 -15.04050 -14.88175 -14.65178 -14.59915 -14.46493 -14.37483 -14.01916 -13.47656 -13.36918 -13.31185 -13.17034 -12.89155 -12.88798 -12.59989 -12.29654 -11.89753 -11.87167 -11.72519 -11.41973 -11.18845 -11.14515 -11.03665 -10.84244 -10.27796 -10.20827 -10.09998 -8.68207 -8.34660 -6.13582 1.16246 1.25861 1.43000 1.46796 1.56987 1.58118 1.73057 2.03750 2.21126 2.26574 2.27948 2.99614 3.20341 3.24474 3.30362 3.41325 3.52966 3.60082 3.69018 3.84854 3.91697 3.99786 4.27155 4.37543 4.41793 4.48000 4.49278 4.57001 4.71484 4.76561 4.81229 4.84772 5.03903 5.07641 5.12882 5.23442 5.36525 5.41469 5.60219 6.19592 6.42461 6.47466 7.06334 7.14419 7.22005 8.74673 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.011284 B = 0.002537 C = 0.002237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2480.840055 B =11036.065172 C =12513.817842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.011 3.989 3 Si 1.001 2.999 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.255 1.255 7 C -0.544 4.544 8 H 0.086 0.914 9 S -0.158 6.158 10 C -0.125 4.125 11 C 0.530 3.470 12 O -0.570 6.570 13 N -0.703 5.703 14 C 0.125 3.875 15 C 0.140 3.860 16 N -0.684 5.684 17 C 0.537 3.463 18 O -0.557 6.557 19 C -0.190 4.190 20 H 0.183 0.817 21 C -0.103 4.103 22 C 0.181 3.819 23 F -0.170 7.170 24 F -0.166 7.166 25 C -0.139 4.139 26 C -0.123 4.123 27 C -0.123 4.123 28 H 0.271 0.729 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.416 0.584 32 H 0.069 0.931 33 H 0.039 0.961 34 H 0.425 0.575 35 H 0.173 0.827 36 H 0.133 0.867 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.105 0.895 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.868 -24.424 -1.674 33.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.178 1.178 7 C -0.692 4.692 8 H 0.104 0.896 9 S 0.069 5.931 10 C -0.276 4.276 11 C 0.316 3.684 12 O -0.448 6.448 13 N -0.356 5.356 14 C 0.000 4.000 15 C 0.052 3.948 16 N -0.338 5.338 17 C 0.323 3.677 18 O -0.434 6.434 19 C -0.212 4.212 20 H 0.200 0.800 21 C -0.141 4.141 22 C 0.144 3.856 23 F -0.150 7.150 24 F -0.146 7.146 25 C -0.178 4.178 26 C -0.160 4.160 27 C -0.160 4.160 28 H 0.080 0.920 29 H 0.134 0.866 30 H 0.127 0.873 31 H 0.253 0.747 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.264 0.736 35 H 0.190 0.810 36 H 0.151 0.849 37 H 0.104 0.896 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.123 0.877 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 19.911 -24.991 -1.741 32.000 hybrid contribution 1.258 1.645 -0.479 2.126 sum 21.169 -23.346 -2.220 31.593 Atomic orbital electron populations 1.70201 1.08100 1.28608 1.48064 1.26177 0.95965 1.03474 0.93733 0.84919 0.78263 0.75818 0.78759 1.19405 1.20432 1.17830 1.23203 0.95394 0.91777 1.58815 0.89627 1.85704 1.10834 0.99520 1.97063 1.23339 1.03444 0.93887 1.06964 1.20202 0.86238 0.86901 0.75101 1.90709 1.17779 1.86170 1.50169 1.45527 1.10103 1.04511 1.75497 1.21556 0.96742 0.80324 1.01371 1.21596 0.91070 0.95599 0.86517 1.45339 1.16104 1.66858 1.05477 1.19725 0.86243 0.77123 0.84622 1.90830 1.21135 1.44806 1.86647 1.23762 1.02708 1.05196 0.89541 0.80019 1.24466 0.98700 0.94800 0.96109 1.20164 0.81393 1.00494 0.83562 1.93068 1.38837 1.86747 1.96352 1.93032 1.92020 1.78773 1.50801 1.23244 0.99923 0.94595 1.00056 1.22841 0.96898 0.95603 1.00682 1.23221 1.01210 0.97943 0.93669 0.92038 0.86602 0.87268 0.74694 0.91285 0.94291 0.73602 0.80979 0.84886 0.89614 0.91874 0.88492 0.89920 0.87654 0.88462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.69 13.22 21.65 0.29 -56.40 16 2 C 0.01 0.63 5.49 84.86 0.47 1.10 16 3 Si 1.00 43.41 29.55 68.60 2.03 45.44 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 7 C -0.54 -31.01 9.50 67.95 0.65 -30.36 16 8 H 0.09 4.47 7.80 -2.91 -0.02 4.44 16 9 S -0.16 -8.91 20.57 -56.49 -1.16 -10.07 16 10 C -0.13 -4.91 6.16 71.24 0.44 -4.48 16 11 C 0.53 20.04 7.85 87.66 0.69 20.73 16 12 O -0.57 -27.97 15.86 -3.06 -0.05 -28.02 16 13 N -0.70 -17.64 5.43 -463.05 -2.51 -20.15 16 14 C 0.13 3.15 4.99 86.38 0.43 3.58 16 15 C 0.14 2.04 0.50 4.13 0.00 2.04 16 16 N -0.68 -7.38 5.15 -420.54 -2.16 -9.55 16 17 C 0.54 9.48 7.13 87.66 0.63 10.11 16 18 O -0.56 -15.96 12.99 -3.05 -0.04 -16.00 16 19 C -0.19 -2.15 6.18 -11.54 -0.07 -2.22 16 20 H 0.18 0.81 8.14 -2.38 -0.02 0.79 16 21 C -0.10 -0.68 10.20 30.59 0.31 -0.37 16 22 C 0.18 3.29 5.19 30.59 0.16 3.45 16 23 F -0.17 -4.70 15.71 44.97 0.71 -3.99 16 24 F -0.17 -3.33 17.60 44.97 0.79 -2.54 16 25 C -0.14 -2.08 6.97 31.18 0.22 -1.86 16 26 C -0.12 -0.94 8.00 31.18 0.25 -0.69 16 27 C -0.12 -0.99 7.16 31.12 0.22 -0.77 16 28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 29 H 0.12 3.94 8.14 -2.40 -0.02 3.92 16 30 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 31 H 0.42 6.82 8.40 -92.71 -0.78 6.04 16 32 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16 33 H 0.04 1.32 6.91 -2.39 -0.02 1.30 16 34 H 0.42 1.00 8.66 -92.71 -0.80 0.19 16 35 H 0.17 -0.16 8.14 -2.39 -0.02 -0.18 16 36 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 1.41 8.04 -2.38 -0.02 1.39 16 38 H 0.06 1.16 7.27 -2.39 -0.02 1.15 16 39 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 40 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.11 0.30 8.09 -2.39 -0.02 0.28 16 42 H 0.10 0.97 8.10 -2.39 -0.02 0.95 16 Total: -1.00 -91.42 379.35 1.77 -89.66 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -0.50 Total: 11.38 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: 4.39 Total: 0.26 kcal Atomic # 7 Polarization: -81.71 SS G_CDS: -4.39 Total: -86.10 kcal Atomic # 8 Polarization: -43.94 SS G_CDS: -0.09 Total: -44.03 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 1.50 Total: -6.53 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.16 Total: -10.07 kcal Total: -91.42 1.77 -89.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001062579176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.564 kcal (2) G-P(sol) polarization free energy of solvation -91.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds