Wall clock time and date at job start Wed Apr 1 2020 04:40:45
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31636 * 1
3 3 Si 1.86804 * 119.99812 * 2 1
4 4 H 1.48498 * 109.46813 * 269.99797 * 3 2 1
5 5 H 1.48497 * 109.47251 * 29.99764 * 3 2 1
6 6 H 1.48497 * 109.46897 * 149.99926 * 3 2 1
7 7 C 1.38795 * 119.99989 * 179.97438 * 2 1 3
8 8 H 1.08002 * 119.99889 * 179.97438 * 7 2 1
9 9 S 1.76201 * 120.00165 * 0.02562 * 7 2 1
10 10 C 1.80995 * 100.00040 * 179.97438 * 9 7 2
11 11 C 1.50698 * 109.47100 * 180.02562 * 10 9 7
12 12 O 1.21288 * 119.99972 * 359.97438 * 11 10 9
13 13 N 1.34776 * 120.00120 * 180.27444 * 11 10 9
14 14 C 1.46503 * 120.00001 * 179.72217 * 13 11 10
15 15 C 1.53006 * 109.46950 * 182.72496 * 14 13 11
16 16 N 1.46501 * 112.84880 * 293.95254 * 15 14 13
17 17 C 1.34782 * 120.00079 * 294.95146 * 16 15 14
18 18 O 1.21287 * 119.99731 * 354.96930 * 17 16 15
19 19 C 1.50696 * 120.00238 * 174.97664 * 17 16 15
20 20 H 1.09004 * 115.54565 * 325.66278 * 19 17 16
21 21 C 1.52992 * 117.50209 * 111.37418 * 19 17 16
22 22 C 1.52995 * 60.00201 * 107.49029 * 21 19 17
23 23 F 1.39901 * 117.49980 * 252.51372 * 22 21 19
24 24 F 1.39898 * 117.51739 * 107.48037 * 22 21 19
25 25 C 1.53778 * 113.61481 * 162.75981 * 15 14 13
26 26 C 1.53956 * 87.01716 * 220.04637 * 25 15 14
27 27 C 1.53772 * 113.61645 * 65.14927 * 15 14 13
28 28 H 0.97001 * 119.99957 * 0.02562 * 1 2 3
29 29 H 1.08999 * 109.47655 * 59.99914 * 10 9 7
30 30 H 1.09004 * 109.47220 * 299.99715 * 10 9 7
31 31 H 0.97002 * 119.99918 * 359.71884 * 13 11 10
32 32 H 1.08997 * 109.47364 * 302.71949 * 14 13 11
33 33 H 1.08996 * 109.47166 * 62.72334 * 14 13 11
34 34 H 0.96993 * 120.00162 * 114.94252 * 16 15 14
35 35 H 1.08998 * 117.50106 * 214.98129 * 21 19 17
36 36 H 1.09000 * 117.49777 * 359.97438 * 21 19 17
37 37 H 1.09007 * 113.61137 * 334.56385 * 25 15 14
38 38 H 1.09000 * 113.61608 * 105.46839 * 25 15 14
39 39 H 1.09003 * 113.53587 * 270.80388 * 26 25 15
40 40 H 1.09005 * 113.73793 * 139.94278 * 26 25 15
41 41 H 1.09003 * 113.61720 * 254.53276 * 27 15 14
42 42 H 1.09000 * 113.61464 * 25.42943 * 27 15 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3164 0.0000 0.0000
3 14 2.2503 1.6178 0.0000
4 1 2.4978 2.0464 -1.4001
5 1 1.4477 2.6527 0.7000
6 1 3.5478 1.4402 0.7000
7 6 2.0103 -1.2020 0.0005
8 1 3.0904 -1.2020 0.0001
9 16 1.1294 -2.7280 0.0005
10 6 2.5159 -3.8914 0.0005
11 6 1.9875 -5.3026 -0.0001
12 8 0.7911 -5.5022 0.0000
13 7 2.8442 -6.3430 0.0054
14 6 2.3304 -7.7150 0.0109
15 6 3.5009 -8.6976 0.0850
16 7 4.3444 -8.6690 -1.1124
17 6 3.8414 -9.0587 -2.3006
18 8 2.7209 -9.5189 -2.3631
19 6 4.6711 -8.9230 -3.5512
20 1 5.3335 -8.0580 -3.5843
21 6 5.1558 -10.2105 -4.2207
22 6 4.0438 -9.3832 -4.8686
23 9 2.7438 -9.8978 -4.8200
24 9 4.3643 -8.6616 -6.0235
25 6 3.0887 -10.1156 0.5143
26 6 4.3761 -10.1476 1.3580
27 6 4.2943 -8.6126 1.3995
28 1 -0.4850 0.8401 -0.0004
29 1 3.1246 -3.7313 0.8905
30 1 3.1245 -3.7313 -0.8895
31 1 3.8010 -6.1834 0.0056
32 1 1.6819 -7.8567 0.8754
33 1 1.7629 -7.8941 -0.9022
34 1 5.2648 -8.3694 -1.0503
35 1 6.1373 -10.1928 -4.6942
36 1 4.8749 -11.1558 -3.7563
37 1 2.1758 -10.1435 1.1094
38 1 3.0838 -10.8355 -0.3041
39 1 5.2430 -10.5242 0.8151
40 1 4.2501 -10.6181 2.3331
41 1 5.2615 -8.1208 1.2948
42 1 3.7118 -8.2288 2.2371
RHF calculation, no. of doubly occupied orbitals= 62
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001062579176.mol2 42
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:40:45
Heat of formation + Delta-G solvation = -144.220627 kcal
Electronic energy + Delta-G solvation = -28153.912363 eV
Core-core repulsion = 23703.783291 eV
Total energy + Delta-G solvation = -4450.129071 eV
No. of doubly occupied orbitals = 62
Molecular weight
(most abundant/longest-lived isotopes) = 348.111 amu
Computer time = 0.68 seconds
Orbital eigenvalues (eV)
-49.70220 -48.39230 -41.87924 -40.46430 -39.40091 -36.58452 -35.51102 -34.58559
-34.28349 -31.47244 -28.60758 -27.62580 -26.79186 -25.99551 -23.68130 -23.42397
-21.89624 -21.48437 -20.34366 -19.84881 -19.36137 -18.13831 -17.90759 -17.59239
-17.30571 -16.96020 -16.88174 -16.78979 -16.37239 -16.23948 -15.77837 -15.47328
-15.28674 -15.04050 -14.88175 -14.65178 -14.59915 -14.46493 -14.37483 -14.01916
-13.47656 -13.36918 -13.31185 -13.17034 -12.89155 -12.88798 -12.59989 -12.29654
-11.89753 -11.87167 -11.72519 -11.41973 -11.18845 -11.14515 -11.03665 -10.84244
-10.27796 -10.20827 -10.09998 -8.68207 -8.34660 -6.13582 1.16246 1.25861
1.43000 1.46796 1.56987 1.58118 1.73057 2.03750 2.21126 2.26574
2.27948 2.99614 3.20341 3.24474 3.30362 3.41325 3.52966 3.60082
3.69018 3.84854 3.91697 3.99786 4.27155 4.37543 4.41793 4.48000
4.49278 4.57001 4.71484 4.76561 4.81229 4.84772 5.03903 5.07641
5.12882 5.23442 5.36525 5.41469 5.60219 6.19592 6.42461 6.47466
7.06334 7.14419 7.22005 8.74673
Molecular weight = 348.11amu
Principal moments of inertia in cm(-1)
A = 0.011284 B = 0.002537 C = 0.002237
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2480.840055 B =11036.065172 C =12513.817842
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.913 5.913
2 C 0.011 3.989
3 Si 1.001 2.999
4 H -0.269 1.269
5 H -0.279 1.279
6 H -0.255 1.255
7 C -0.544 4.544
8 H 0.086 0.914
9 S -0.158 6.158
10 C -0.125 4.125
11 C 0.530 3.470
12 O -0.570 6.570
13 N -0.703 5.703
14 C 0.125 3.875
15 C 0.140 3.860
16 N -0.684 5.684
17 C 0.537 3.463
18 O -0.557 6.557
19 C -0.190 4.190
20 H 0.183 0.817
21 C -0.103 4.103
22 C 0.181 3.819
23 F -0.170 7.170
24 F -0.166 7.166
25 C -0.139 4.139
26 C -0.123 4.123
27 C -0.123 4.123
28 H 0.271 0.729
29 H 0.116 0.884
30 H 0.109 0.891
31 H 0.416 0.584
32 H 0.069 0.931
33 H 0.039 0.961
34 H 0.425 0.575
35 H 0.173 0.827
36 H 0.133 0.867
37 H 0.085 0.915
38 H 0.062 0.938
39 H 0.097 0.903
40 H 0.082 0.918
41 H 0.105 0.895
42 H 0.097 0.903
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.868 -24.424 -1.674 33.500
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.550 5.550
2 C -0.193 4.193
3 Si 0.822 3.178
4 H -0.194 1.194
5 H -0.204 1.204
6 H -0.178 1.178
7 C -0.692 4.692
8 H 0.104 0.896
9 S 0.069 5.931
10 C -0.276 4.276
11 C 0.316 3.684
12 O -0.448 6.448
13 N -0.356 5.356
14 C 0.000 4.000
15 C 0.052 3.948
16 N -0.338 5.338
17 C 0.323 3.677
18 O -0.434 6.434
19 C -0.212 4.212
20 H 0.200 0.800
21 C -0.141 4.141
22 C 0.144 3.856
23 F -0.150 7.150
24 F -0.146 7.146
25 C -0.178 4.178
26 C -0.160 4.160
27 C -0.160 4.160
28 H 0.080 0.920
29 H 0.134 0.866
30 H 0.127 0.873
31 H 0.253 0.747
32 H 0.087 0.913
33 H 0.057 0.943
34 H 0.264 0.736
35 H 0.190 0.810
36 H 0.151 0.849
37 H 0.104 0.896
38 H 0.081 0.919
39 H 0.115 0.885
40 H 0.101 0.899
41 H 0.123 0.877
42 H 0.115 0.885
Dipole moment (debyes) X Y Z Total
from point charges 19.911 -24.991 -1.741 32.000
hybrid contribution 1.258 1.645 -0.479 2.126
sum 21.169 -23.346 -2.220 31.593
Atomic orbital electron populations
1.70201 1.08100 1.28608 1.48064 1.26177 0.95965 1.03474 0.93733
0.84919 0.78263 0.75818 0.78759 1.19405 1.20432 1.17830 1.23203
0.95394 0.91777 1.58815 0.89627 1.85704 1.10834 0.99520 1.97063
1.23339 1.03444 0.93887 1.06964 1.20202 0.86238 0.86901 0.75101
1.90709 1.17779 1.86170 1.50169 1.45527 1.10103 1.04511 1.75497
1.21556 0.96742 0.80324 1.01371 1.21596 0.91070 0.95599 0.86517
1.45339 1.16104 1.66858 1.05477 1.19725 0.86243 0.77123 0.84622
1.90830 1.21135 1.44806 1.86647 1.23762 1.02708 1.05196 0.89541
0.80019 1.24466 0.98700 0.94800 0.96109 1.20164 0.81393 1.00494
0.83562 1.93068 1.38837 1.86747 1.96352 1.93032 1.92020 1.78773
1.50801 1.23244 0.99923 0.94595 1.00056 1.22841 0.96898 0.95603
1.00682 1.23221 1.01210 0.97943 0.93669 0.92038 0.86602 0.87268
0.74694 0.91285 0.94291 0.73602 0.80979 0.84886 0.89614 0.91874
0.88492 0.89920 0.87654 0.88462
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.91 -56.69 13.22 21.65 0.29 -56.40 16
2 C 0.01 0.63 5.49 84.86 0.47 1.10 16
3 Si 1.00 43.41 29.55 68.60 2.03 45.44 16
4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16
5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16
6 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16
7 C -0.54 -31.01 9.50 67.95 0.65 -30.36 16
8 H 0.09 4.47 7.80 -2.91 -0.02 4.44 16
9 S -0.16 -8.91 20.57 -56.49 -1.16 -10.07 16
10 C -0.13 -4.91 6.16 71.24 0.44 -4.48 16
11 C 0.53 20.04 7.85 87.66 0.69 20.73 16
12 O -0.57 -27.97 15.86 -3.06 -0.05 -28.02 16
13 N -0.70 -17.64 5.43 -463.05 -2.51 -20.15 16
14 C 0.13 3.15 4.99 86.38 0.43 3.58 16
15 C 0.14 2.04 0.50 4.13 0.00 2.04 16
16 N -0.68 -7.38 5.15 -420.54 -2.16 -9.55 16
17 C 0.54 9.48 7.13 87.66 0.63 10.11 16
18 O -0.56 -15.96 12.99 -3.05 -0.04 -16.00 16
19 C -0.19 -2.15 6.18 -11.54 -0.07 -2.22 16
20 H 0.18 0.81 8.14 -2.38 -0.02 0.79 16
21 C -0.10 -0.68 10.20 30.59 0.31 -0.37 16
22 C 0.18 3.29 5.19 30.59 0.16 3.45 16
23 F -0.17 -4.70 15.71 44.97 0.71 -3.99 16
24 F -0.17 -3.33 17.60 44.97 0.79 -2.54 16
25 C -0.14 -2.08 6.97 31.18 0.22 -1.86 16
26 C -0.12 -0.94 8.00 31.18 0.25 -0.69 16
27 C -0.12 -0.99 7.16 31.12 0.22 -0.77 16
28 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16
29 H 0.12 3.94 8.14 -2.40 -0.02 3.92 16
30 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16
31 H 0.42 6.82 8.40 -92.71 -0.78 6.04 16
32 H 0.07 1.88 8.06 -2.39 -0.02 1.86 16
33 H 0.04 1.32 6.91 -2.39 -0.02 1.30 16
34 H 0.42 1.00 8.66 -92.71 -0.80 0.19 16
35 H 0.17 -0.16 8.14 -2.39 -0.02 -0.18 16
36 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16
37 H 0.09 1.41 8.04 -2.38 -0.02 1.39 16
38 H 0.06 1.16 7.27 -2.39 -0.02 1.15 16
39 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16
40 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16
41 H 0.11 0.30 8.09 -2.39 -0.02 0.28 16
42 H 0.10 0.97 8.10 -2.39 -0.02 0.95 16
Total: -1.00 -91.42 379.35 1.77 -89.66
By element:
Atomic # 1 Polarization: 11.88 SS G_CDS: -0.50 Total: 11.38 kcal
Atomic # 6 Polarization: -4.13 SS G_CDS: 4.39 Total: 0.26 kcal
Atomic # 7 Polarization: -81.71 SS G_CDS: -4.39 Total: -86.10 kcal
Atomic # 8 Polarization: -43.94 SS G_CDS: -0.09 Total: -44.03 kcal
Atomic # 9 Polarization: -8.03 SS G_CDS: 1.50 Total: -6.53 kcal
Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal
Atomic # 16 Polarization: -8.91 SS G_CDS: -1.16 Total: -10.07 kcal
Total: -91.42 1.77 -89.66 kcal
The number of atoms in the molecule is 42
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001062579176.mol2 42
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -54.564 kcal
(2) G-P(sol) polarization free energy of solvation -91.425 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.989 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.768 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.657 kcal
(6) G-S(sol) free energy of system = (1) + (5) -144.221 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.69 seconds