Wall clock time and date at job start Wed Apr 1 2020 05:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99685 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99866 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99859 * 3 2 1 7 7 C 1.38797 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99660 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00452 * 180.02562 * 7 2 1 10 10 C 1.80990 * 100.00278 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47384 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99695 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99952 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99670 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.49849 * 35.06164 * 14 13 11 16 16 C 1.53041 * 109.49763 * 274.99656 * 14 13 11 17 17 C 1.53042 * 109.53750 * 178.68498 * 16 14 13 18 18 C 1.53193 * 109.31472 * 61.36405 * 17 16 14 19 19 N 1.46923 * 108.77604 * 305.36730 * 18 17 16 20 20 C 1.34783 * 120.62894 * 233.63102 * 19 18 17 21 21 O 1.21277 * 119.99735 * 179.97438 * 20 19 18 22 22 C 1.50697 * 119.99662 * 359.97438 * 20 19 18 23 23 H 1.08997 * 115.55287 * 325.57966 * 22 20 19 24 24 C 1.53004 * 117.49528 * 179.91513 * 22 20 19 25 25 C 1.52999 * 117.49550 * 111.25687 * 22 20 19 26 26 F 1.39900 * 117.49666 * 214.97070 * 25 22 20 27 27 F 1.39898 * 117.50231 * 359.97438 * 25 22 20 28 28 C 1.46926 * 118.73807 * 53.60239 * 19 18 17 29 29 H 0.96997 * 119.99773 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47475 * 300.00386 * 10 9 7 31 31 H 1.08999 * 109.47457 * 59.99863 * 10 9 7 32 32 H 0.96994 * 120.00661 * 359.97438 * 13 11 10 33 33 H 1.09004 * 109.45936 * 298.70325 * 16 14 13 34 34 H 1.08999 * 109.45700 * 58.66164 * 16 14 13 35 35 H 1.08999 * 109.49591 * 181.31283 * 17 16 14 36 36 H 1.09000 * 109.49816 * 301.41250 * 17 16 14 37 37 H 1.09006 * 109.58088 * 65.15083 * 18 17 16 38 38 H 1.08994 * 109.58747 * 185.43332 * 18 17 16 39 39 H 1.09001 * 117.49519 * 359.97438 * 24 22 20 40 40 H 1.08993 * 117.49801 * 144.99521 * 24 22 20 41 41 H 1.09004 * 109.58424 * 186.60573 * 28 19 18 42 42 H 1.09001 * 109.58671 * 66.18744 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 1.4001 5 1 1.4478 2.6527 -0.7001 6 1 3.5479 1.4402 -0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2020 0.0001 10 6 4.0867 -2.9844 -0.0001 11 6 5.5732 -3.2325 0.0010 12 8 6.3441 -2.2962 0.0015 13 7 6.0457 -4.4946 0.0005 14 6 7.4908 -4.7356 0.0011 15 1 7.9878 -3.9663 0.5920 16 6 8.0160 -4.6949 -1.4358 17 6 9.5307 -4.9140 -1.4335 18 6 9.8422 -6.2931 -0.8438 19 7 9.2161 -6.3931 0.4816 20 6 9.9459 -6.7351 1.5619 21 8 9.4174 -6.8138 2.6506 22 6 11.4187 -7.0196 1.4168 23 1 11.7158 -7.4953 0.4822 24 6 12.1924 -7.4007 2.6806 25 6 12.3957 -6.0233 2.0443 26 9 13.6024 -5.7931 1.3748 27 9 11.8536 -4.9178 2.7083 28 6 7.7793 -6.1127 0.6070 29 1 -0.4850 0.8400 -0.0004 30 1 3.6434 -3.4318 0.8895 31 1 3.6441 -3.4313 -0.8903 32 1 5.4292 -5.2434 -0.0002 33 1 7.5364 -5.4802 -2.0202 34 1 7.7901 -3.7244 -1.8776 35 1 9.9074 -4.8617 -2.4550 36 1 10.0088 -4.1433 -0.8289 37 1 9.4416 -7.0686 -1.4967 38 1 10.9213 -6.4154 -0.7506 39 1 11.6361 -7.4451 3.6169 40 1 12.9984 -8.1270 2.5774 41 1 7.4971 -6.1150 1.6599 42 1 7.2104 -6.8736 0.0726 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070692180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:23 Heat of formation + Delta-G solvation = -135.862666 kcal Electronic energy + Delta-G solvation = -28052.260030 eV Core-core repulsion = 23602.493387 eV Total energy + Delta-G solvation = -4449.766643 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.21033 -47.87513 -40.91783 -39.51023 -37.83968 -36.10733 -34.71607 -32.71878 -32.44522 -30.95986 -28.72149 -26.62600 -25.62679 -24.51996 -23.23005 -23.09400 -21.31914 -20.53291 -19.54256 -18.75146 -17.94046 -17.58843 -17.21815 -16.62438 -16.50708 -16.29278 -15.84165 -15.27380 -15.10168 -14.95039 -14.66482 -14.55344 -14.49829 -14.16662 -14.04753 -13.96469 -13.88556 -13.47255 -13.37096 -13.08095 -12.84924 -12.79867 -12.25103 -11.90644 -11.81185 -11.45704 -11.29260 -11.26408 -11.18595 -11.01102 -10.80976 -10.62705 -10.38041 -9.86794 -9.57962 -9.29938 -9.02235 -8.97513 -8.51410 -6.92951 -6.29618 -4.01535 1.57174 2.15129 2.45986 2.76809 2.79975 2.91893 3.29061 3.33766 3.49972 3.54307 3.57125 3.64553 3.98512 4.06775 4.32281 4.35260 4.46016 4.46949 4.52686 4.72020 4.79630 4.82375 4.93178 4.99744 5.09409 5.09829 5.20226 5.26993 5.28541 5.35131 5.52236 5.63559 5.74157 5.86008 5.91940 5.97587 6.00945 6.47334 6.76281 7.52253 7.55903 7.93438 8.40845 8.43486 9.16540 10.79570 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.021659 B = 0.002064 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.467549 B =13560.655941 C =13801.595749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.124 4.124 11 C 0.534 3.466 12 O -0.516 6.516 13 N -0.732 5.732 14 C 0.134 3.866 15 H 0.093 0.907 16 C -0.132 4.132 17 C -0.133 4.133 18 C 0.102 3.898 19 N -0.600 5.600 20 C 0.547 3.453 21 O -0.521 6.521 22 C -0.197 4.197 23 H 0.152 0.848 24 C -0.140 4.140 25 C 0.224 3.776 26 F -0.153 7.153 27 F -0.147 7.147 28 C 0.107 3.893 29 H 0.271 0.729 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.400 0.600 33 H 0.068 0.932 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.086 0.914 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.102 0.898 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.949 -20.731 -1.636 33.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.275 4.275 11 C 0.320 3.680 12 O -0.390 6.390 13 N -0.386 5.386 14 C 0.028 3.972 15 H 0.111 0.889 16 C -0.171 4.171 17 C -0.172 4.172 18 C -0.020 4.020 19 N -0.334 5.334 20 C 0.333 3.667 21 O -0.396 6.396 22 C -0.219 4.219 23 H 0.169 0.831 24 C -0.178 4.178 25 C 0.187 3.813 26 F -0.134 7.134 27 F -0.127 7.127 28 C -0.016 4.016 29 H 0.081 0.919 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.234 0.766 33 H 0.086 0.914 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.120 0.880 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 26.781 -19.047 -1.042 32.880 hybrid contribution -1.035 -0.458 -0.264 1.162 sum 25.746 -19.504 -1.306 32.326 Atomic orbital electron populations 1.69938 1.05904 1.27773 1.48039 1.24716 0.94463 0.98979 0.93184 0.86733 0.81866 0.83273 0.79959 1.19198 1.19940 1.15940 1.22312 0.88240 0.97542 1.58808 0.89363 1.84804 1.09320 0.99948 1.97429 1.23279 0.93798 1.04490 1.05894 1.20299 0.90635 0.82159 0.74926 1.90708 1.58724 1.42110 1.47430 1.45889 1.06593 1.08304 1.77799 1.21163 0.82051 0.97070 0.96901 0.88919 1.21961 0.94885 1.03560 0.96711 1.21902 0.96803 0.96509 1.01986 1.21933 0.98492 0.98507 0.83107 1.47843 1.09384 1.68004 1.08126 1.19167 0.86581 0.76968 0.83943 1.90755 1.71972 1.51218 1.25657 1.23749 0.92485 1.03379 1.02324 0.83064 1.24342 1.01558 0.93805 0.98078 1.19645 0.82304 0.82909 0.96446 1.93072 1.44317 1.95555 1.80426 1.93118 1.84769 1.54779 1.80083 1.21828 0.80118 0.95788 1.03857 0.91933 0.88405 0.88381 0.76569 0.91351 0.90300 0.89840 0.90931 0.90447 0.89537 0.84483 0.84791 0.87987 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.55 13.97 55.49 0.78 -25.77 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.84 27.74 -169.99 -4.71 17.12 16 4 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 7 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 8 H 0.09 2.64 8.03 -52.48 -0.42 2.21 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.12 -2.34 6.16 36.01 0.22 -2.12 16 11 C 0.53 9.18 7.81 -10.99 -0.09 9.09 16 12 O -0.52 -10.90 15.53 5.55 0.09 -10.81 16 13 N -0.73 -8.76 5.08 -53.69 -0.27 -9.03 16 14 C 0.13 1.46 2.60 -67.81 -0.18 1.28 16 15 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 16 C -0.13 -1.22 5.46 -26.69 -0.15 -1.36 16 17 C -0.13 -0.91 6.08 -26.61 -0.16 -1.08 16 18 C 0.10 0.54 6.29 -3.71 -0.02 0.51 16 19 N -0.60 -4.86 2.97 -172.77 -0.51 -5.38 16 20 C 0.55 5.19 7.12 -10.98 -0.08 5.11 16 21 O -0.52 -6.84 15.67 5.56 0.09 -6.75 16 22 C -0.20 -1.20 4.94 -91.77 -0.45 -1.66 16 23 H 0.15 0.43 6.82 -51.93 -0.35 0.08 16 24 C -0.14 -0.73 10.02 -26.69 -0.27 -0.99 16 25 C 0.22 1.74 5.20 -26.69 -0.14 1.60 16 26 F -0.15 -1.20 17.60 2.25 0.04 -1.16 16 27 F -0.15 -1.66 17.13 2.25 0.04 -1.62 16 28 C 0.11 0.94 5.90 -3.71 -0.02 0.92 16 29 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 30 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 31 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 32 H 0.40 3.56 8.60 -40.82 -0.35 3.21 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 0.30 5.68 -51.93 -0.30 0.01 16 39 H 0.14 0.85 7.67 -51.93 -0.40 0.45 16 40 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.10 1.09 7.01 -51.93 -0.36 0.73 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 371.30 15.07 5.60 5.60 Total: -1.00 -36.71 371.30 -7.53 -44.23 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: -5.54 Total: -0.20 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -1.12 Total: -0.67 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: -0.01 Total: -40.18 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: 0.17 Total: -17.56 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.08 Total: -2.78 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.71 Total: 17.12 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.71 -7.53 -44.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070692180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.628 kcal (2) G-P(sol) polarization free energy of solvation -36.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds