Wall clock time and date at job start Wed Apr 1 2020 05:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00048 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99685 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99866 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99859 * 3 2 1 7 7 C 1.38797 * 120.00292 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99660 * 359.97438 * 7 2 1 9 9 S 1.76199 * 120.00452 * 180.02562 * 7 2 1 10 10 C 1.80990 * 100.00278 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47384 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99695 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99952 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99670 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.49849 * 35.06164 * 14 13 11 16 16 C 1.53041 * 109.49763 * 274.99656 * 14 13 11 17 17 C 1.53042 * 109.53750 * 178.68498 * 16 14 13 18 18 C 1.53193 * 109.31472 * 61.36405 * 17 16 14 19 19 N 1.46923 * 108.77604 * 305.36730 * 18 17 16 20 20 C 1.34783 * 120.62894 * 233.63102 * 19 18 17 21 21 O 1.21277 * 119.99735 * 179.97438 * 20 19 18 22 22 C 1.50697 * 119.99662 * 359.97438 * 20 19 18 23 23 H 1.08997 * 115.55287 * 325.57966 * 22 20 19 24 24 C 1.53004 * 117.49528 * 179.91513 * 22 20 19 25 25 C 1.52999 * 117.49550 * 111.25687 * 22 20 19 26 26 F 1.39900 * 117.49666 * 214.97070 * 25 22 20 27 27 F 1.39898 * 117.50231 * 359.97438 * 25 22 20 28 28 C 1.46926 * 118.73807 * 53.60239 * 19 18 17 29 29 H 0.96997 * 119.99773 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47475 * 300.00386 * 10 9 7 31 31 H 1.08999 * 109.47457 * 59.99863 * 10 9 7 32 32 H 0.96994 * 120.00661 * 359.97438 * 13 11 10 33 33 H 1.09004 * 109.45936 * 298.70325 * 16 14 13 34 34 H 1.08999 * 109.45700 * 58.66164 * 16 14 13 35 35 H 1.08999 * 109.49591 * 181.31283 * 17 16 14 36 36 H 1.09000 * 109.49816 * 301.41250 * 17 16 14 37 37 H 1.09006 * 109.58088 * 65.15083 * 18 17 16 38 38 H 1.08994 * 109.58747 * 185.43332 * 18 17 16 39 39 H 1.09001 * 117.49519 * 359.97438 * 24 22 20 40 40 H 1.08993 * 117.49801 * 144.99521 * 24 22 20 41 41 H 1.09004 * 109.58424 * 186.60573 * 28 19 18 42 42 H 1.09001 * 109.58671 * 66.18744 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 1.4001 5 1 1.4478 2.6527 -0.7001 6 1 3.5479 1.4402 -0.7000 7 6 2.0104 -1.2020 -0.0005 8 1 1.4704 -2.1373 -0.0005 9 16 3.7724 -1.2020 0.0001 10 6 4.0867 -2.9844 -0.0001 11 6 5.5732 -3.2325 0.0010 12 8 6.3441 -2.2962 0.0015 13 7 6.0457 -4.4946 0.0005 14 6 7.4908 -4.7356 0.0011 15 1 7.9878 -3.9663 0.5920 16 6 8.0160 -4.6949 -1.4358 17 6 9.5307 -4.9140 -1.4335 18 6 9.8422 -6.2931 -0.8438 19 7 9.2161 -6.3931 0.4816 20 6 9.9459 -6.7351 1.5619 21 8 9.4174 -6.8138 2.6506 22 6 11.4187 -7.0196 1.4168 23 1 11.7158 -7.4953 0.4822 24 6 12.1924 -7.4007 2.6806 25 6 12.3957 -6.0233 2.0443 26 9 13.6024 -5.7931 1.3748 27 9 11.8536 -4.9178 2.7083 28 6 7.7793 -6.1127 0.6070 29 1 -0.4850 0.8400 -0.0004 30 1 3.6434 -3.4318 0.8895 31 1 3.6441 -3.4313 -0.8903 32 1 5.4292 -5.2434 -0.0002 33 1 7.5364 -5.4802 -2.0202 34 1 7.7901 -3.7244 -1.8776 35 1 9.9074 -4.8617 -2.4550 36 1 10.0088 -4.1433 -0.8289 37 1 9.4416 -7.0686 -1.4967 38 1 10.9213 -6.4154 -0.7506 39 1 11.6361 -7.4451 3.6169 40 1 12.9984 -8.1270 2.5774 41 1 7.4971 -6.1150 1.6599 42 1 7.2104 -6.8736 0.0726 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070692180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:22 Heat of formation + Delta-G solvation = -162.136397 kcal Electronic energy + Delta-G solvation = -28053.399344 eV Core-core repulsion = 23602.493387 eV Total energy + Delta-G solvation = -4450.905957 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 348.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.83112 -48.52106 -41.67272 -40.69607 -38.71017 -36.67898 -35.77241 -34.68467 -33.49048 -32.03395 -29.96165 -27.86990 -27.27461 -25.17490 -23.91415 -23.62362 -22.21175 -21.68020 -20.27154 -19.84963 -19.35152 -18.22721 -18.01638 -17.88492 -17.40636 -17.12726 -17.08427 -16.56950 -16.53232 -15.97096 -15.71002 -15.33889 -15.31489 -15.17026 -14.99327 -14.83161 -14.74563 -14.70594 -14.58596 -14.07525 -13.79830 -13.69752 -13.36090 -13.30935 -13.03962 -12.70151 -12.54766 -12.44816 -12.10498 -12.04437 -11.93334 -11.87845 -11.37938 -11.18799 -11.12040 -10.96583 -10.55175 -10.27984 -9.81326 -9.01474 -8.52959 -6.23761 0.90651 0.97359 1.29896 1.41135 1.48004 1.52115 1.65176 1.96062 2.22265 2.23986 2.27988 2.70281 2.85238 3.04172 3.11135 3.44810 3.52908 3.64636 3.75925 3.81871 3.90922 3.96197 4.17038 4.22017 4.36574 4.43561 4.45299 4.50161 4.59811 4.65635 4.72093 4.77978 4.81679 4.97670 5.13068 5.16454 5.29922 5.45335 5.69585 6.10329 6.13559 6.41047 6.87201 6.92336 7.14910 8.59343 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.021659 B = 0.002064 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.467549 B =13560.655941 C =13801.595749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.045 3.955 3 Si 0.914 3.086 4 H -0.265 1.265 5 H -0.258 1.258 6 H -0.237 1.237 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.179 6.179 10 C -0.110 4.110 11 C 0.538 3.462 12 O -0.561 6.561 13 N -0.706 5.706 14 C 0.136 3.864 15 H 0.053 0.947 16 C -0.128 4.128 17 C -0.130 4.130 18 C 0.100 3.900 19 N -0.599 5.599 20 C 0.537 3.463 21 O -0.567 6.567 22 C -0.184 4.184 23 H 0.194 0.806 24 C -0.121 4.121 25 C 0.197 3.803 26 F -0.154 7.154 27 F -0.178 7.178 28 C 0.113 3.887 29 H 0.277 0.723 30 H 0.113 0.887 31 H 0.119 0.881 32 H 0.419 0.581 33 H 0.095 0.905 34 H 0.046 0.954 35 H 0.108 0.892 36 H 0.047 0.953 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.123 0.877 40 H 0.173 0.827 41 H 0.079 0.921 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.002 -23.311 -3.167 36.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.160 4.160 3 Si 0.736 3.264 4 H -0.189 1.189 5 H -0.182 1.182 6 H -0.161 1.161 7 C -0.675 4.675 8 H 0.082 0.918 9 S 0.048 5.952 10 C -0.261 4.261 11 C 0.324 3.676 12 O -0.439 6.439 13 N -0.360 5.360 14 C 0.030 3.970 15 H 0.071 0.929 16 C -0.166 4.166 17 C -0.169 4.169 18 C -0.021 4.021 19 N -0.331 5.331 20 C 0.325 3.675 21 O -0.446 6.446 22 C -0.206 4.206 23 H 0.211 0.789 24 C -0.158 4.158 25 C 0.160 3.840 26 F -0.135 7.135 27 F -0.158 7.158 28 C -0.010 4.010 29 H 0.086 0.914 30 H 0.131 0.869 31 H 0.137 0.863 32 H 0.257 0.743 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.066 0.934 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.141 0.859 40 H 0.191 0.809 41 H 0.097 0.903 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 28.838 -21.683 -2.606 36.174 hybrid contribution -1.651 0.208 0.216 1.678 sum 27.187 -21.475 -2.390 34.728 Atomic orbital electron populations 1.70012 1.07228 1.29008 1.49130 1.25554 0.95287 1.02215 0.92964 0.85879 0.80700 0.79736 0.80117 1.18933 1.18217 1.16106 1.22449 0.90140 0.96728 1.58191 0.91787 1.84758 1.06566 1.06296 1.97594 1.23262 0.95574 0.99584 1.07666 1.19980 0.89472 0.83272 0.74925 1.90700 1.59343 1.43862 1.50017 1.45618 1.07839 1.07088 1.75493 1.21229 0.80479 0.97285 0.98025 0.92902 1.21917 0.96930 1.02761 0.95013 1.21901 0.94695 0.97068 1.03214 1.22220 1.00062 0.98048 0.81727 1.48001 1.09015 1.66970 1.09152 1.19793 0.87989 0.76295 0.83452 1.90734 1.73167 1.53310 1.27425 1.23868 0.89749 1.02301 1.04640 0.78929 1.24505 1.01781 0.92378 0.97176 1.20054 0.82896 0.82928 0.98157 1.93063 1.44305 1.95597 1.80508 1.93050 1.85321 1.56551 1.80897 1.21716 0.81490 0.95062 1.02752 0.91357 0.86887 0.86328 0.74289 0.88661 0.93483 0.87368 0.93385 0.87214 0.87168 0.85866 0.80939 0.90262 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.92 13.97 21.65 0.30 -55.62 16 2 C 0.05 2.67 5.50 84.86 0.47 3.14 16 3 Si 0.91 45.44 27.74 68.60 1.90 47.34 16 4 H -0.26 -12.93 7.11 99.48 0.71 -12.23 16 5 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.24 -11.78 6.74 99.48 0.67 -11.11 16 7 C -0.53 -30.76 10.04 67.95 0.68 -30.08 16 8 H 0.06 3.91 8.03 -2.91 -0.02 3.89 16 9 S -0.18 -9.08 18.55 -56.49 -1.05 -10.12 16 10 C -0.11 -4.09 6.16 71.24 0.44 -3.65 16 11 C 0.54 18.35 7.81 87.66 0.68 19.03 16 12 O -0.56 -24.27 15.53 -3.04 -0.05 -24.31 16 13 N -0.71 -16.07 5.08 -442.16 -2.25 -18.32 16 14 C 0.14 2.85 2.60 45.07 0.12 2.96 16 15 H 0.05 1.56 7.58 -2.39 -0.02 1.55 16 16 C -0.13 -2.12 5.46 30.62 0.17 -1.95 16 17 C -0.13 -1.48 6.08 30.67 0.19 -1.30 16 18 C 0.10 0.66 6.29 86.36 0.54 1.20 16 19 N -0.60 -8.36 2.97 -818.91 -2.43 -10.79 16 20 C 0.54 9.44 7.12 87.66 0.62 10.06 16 21 O -0.57 -15.01 15.67 -3.02 -0.05 -15.06 16 22 C -0.18 -1.75 4.94 -11.54 -0.06 -1.81 16 23 H 0.19 0.11 6.82 -2.39 -0.02 0.09 16 24 C -0.12 -0.98 10.02 30.62 0.31 -0.68 16 25 C 0.20 2.82 5.20 30.62 0.16 2.98 16 26 F -0.15 -2.15 17.60 44.97 0.79 -1.36 16 27 F -0.18 -4.16 17.13 44.97 0.77 -3.39 16 28 C 0.11 1.80 5.90 86.36 0.51 2.31 16 29 H 0.28 15.64 8.31 -92.71 -0.77 14.87 16 30 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 31 H 0.12 3.94 8.14 -2.40 -0.02 3.92 16 32 H 0.42 6.41 8.60 -92.71 -0.80 5.61 16 33 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 35 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 38 H 0.11 0.25 5.68 -2.39 -0.01 0.23 16 39 H 0.12 1.42 7.67 -2.39 -0.02 1.40 16 40 H 0.17 0.02 8.14 -2.39 -0.02 0.00 16 41 H 0.08 1.68 7.01 -2.38 -0.02 1.66 16 42 H 0.11 1.05 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -85.12 371.30 3.01 -82.11 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: 0.23 Total: 7.30 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 4.83 Total: 2.22 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -4.38 Total: -84.73 kcal Atomic # 8 Polarization: -39.28 SS G_CDS: -0.09 Total: -39.37 kcal Atomic # 9 Polarization: -6.31 SS G_CDS: 1.56 Total: -4.75 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.90 Total: 47.34 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.12 kcal Total: -85.12 3.01 -82.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070692180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.024 kcal (2) G-P(sol) polarization free energy of solvation -85.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds