Wall clock time and date at job start Wed Apr 1 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86797 * 120.00285 * 2 1 4 4 H 1.48502 * 109.47288 * 89.99370 * 3 2 1 5 5 H 1.48497 * 109.47345 * 209.99723 * 3 2 1 6 6 H 1.48501 * 109.46772 * 330.00018 * 3 2 1 7 7 C 1.38816 * 120.00074 * 179.71833 * 2 1 3 8 8 H 1.08002 * 120.00035 * 0.02562 * 7 2 1 9 9 N 1.36930 * 120.00139 * 180.02562 * 7 2 1 10 10 C 1.46500 * 120.00253 * 180.02562 * 9 7 2 11 11 H 1.08996 * 112.84880 * 336.20115 * 10 9 7 12 12 C 1.53778 * 113.61681 * 107.50440 * 10 9 7 13 13 C 1.53778 * 87.08364 * 139.98435 * 12 10 9 14 14 H 1.09000 * 113.69027 * 89.13097 * 13 12 10 15 15 C 1.53004 * 113.61413 * 220.02230 * 13 12 10 16 16 N 1.46501 * 109.46660 * 272.49606 * 15 13 12 17 17 C 1.34785 * 119.99538 * 180.02562 * 16 15 13 18 18 O 1.21719 * 119.99992 * 0.02562 * 17 16 15 19 19 C 1.46567 * 119.99781 * 180.02562 * 17 16 15 20 20 C 1.40550 * 126.58263 * 353.92249 * 19 17 16 21 21 N 1.30739 * 108.74368 * 179.97438 * 20 19 17 22 22 N 1.40028 * 109.60210 * 359.97438 * 21 20 19 23 23 C 1.36266 * 132.00673 * 179.97438 * 22 21 20 24 24 C 1.35168 * 120.73234 * 179.97438 * 23 22 21 25 25 C 1.40157 * 120.33114 * 0.02642 * 24 23 22 26 26 C 1.36550 * 119.39563 * 359.97438 * 25 24 23 27 27 Cl 1.73600 * 120.38202 * 179.97438 * 26 25 24 28 28 C 1.36555 * 107.90489 * 359.75059 * 22 21 20 29 29 C 1.53784 * 113.61656 * 205.00456 * 10 9 7 30 30 H 0.96998 * 119.99915 * 0.02562 * 1 2 3 31 31 H 0.97004 * 120.00116 * 0.02562 * 9 7 2 32 32 H 1.09007 * 113.61642 * 254.53654 * 12 10 9 33 33 H 1.09009 * 113.61147 * 25.43090 * 12 10 9 34 34 H 1.08999 * 109.46930 * 32.49502 * 15 13 12 35 35 H 1.08995 * 109.46857 * 152.49796 * 15 13 12 36 36 H 0.96999 * 120.00389 * 359.97438 * 16 15 13 37 37 H 1.08005 * 125.62565 * 0.02562 * 20 19 17 38 38 H 1.08006 * 119.63473 * 0.02714 * 23 22 21 39 39 H 1.07999 * 119.83908 * 179.97438 * 24 23 22 40 40 H 1.08000 * 120.30440 * 179.97438 * 25 24 23 41 41 H 1.08993 * 113.61139 * 334.56411 * 29 10 9 42 42 H 1.08998 * 113.61413 * 105.39105 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 1.4001 5 1 3.5478 1.4401 -0.7000 6 1 1.4477 2.6526 -0.7001 7 6 2.0103 -1.2022 0.0059 8 1 1.4703 -2.1375 0.0101 9 7 3.3796 -1.2022 0.0064 10 6 4.1121 -2.4709 0.0121 11 1 3.5277 -3.2952 0.4207 12 6 4.7877 -2.7982 -1.3300 13 6 5.9848 -3.3116 -0.5126 14 1 5.9142 -4.3666 -0.2479 15 6 7.3419 -2.9392 -1.1130 16 7 7.7447 -3.9622 -2.0812 17 6 8.9149 -3.8435 -2.7394 18 8 9.6372 -2.8867 -2.5290 19 6 9.3177 -4.8667 -3.7084 20 6 8.6558 -6.0786 -3.9709 21 7 9.3141 -6.7246 -4.8975 22 7 10.4315 -5.9766 -5.2880 23 6 11.4129 -6.2134 -6.2033 24 6 12.4043 -5.3161 -6.4008 25 6 12.4377 -4.1245 -5.6637 26 6 11.4590 -3.8776 -4.7441 27 17 11.4757 -2.4103 -3.8165 28 6 10.4383 -4.8210 -4.5605 29 6 5.5258 -2.3633 0.6078 30 1 -0.4850 0.8400 -0.0004 31 1 3.8646 -0.3621 0.0031 32 1 4.2788 -3.5783 -1.8963 33 1 5.0147 -1.9174 -1.9308 34 1 7.2648 -1.9745 -1.6146 35 1 8.0859 -2.8775 -0.3189 36 1 7.1696 -4.7253 -2.2481 37 1 7.7522 -6.4194 -3.4875 38 1 11.3980 -7.1278 -6.7778 39 1 13.1751 -5.5187 -7.1297 40 1 13.2303 -3.4080 -5.8217 41 1 5.9546 -1.3638 0.5368 42 1 5.6125 -2.7912 1.6065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086143337.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:33 Heat of formation + Delta-G solvation = 116.453839 kcal Electronic energy + Delta-G solvation = -26780.593206 eV Core-core repulsion = 22790.413308 eV Total energy + Delta-G solvation = -3990.179898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.65905 -39.54952 -38.45347 -37.87198 -36.60923 -34.63398 -33.33797 -33.08185 -31.39133 -30.77123 -29.53475 -27.32592 -25.16562 -24.42582 -24.15919 -23.20447 -22.75746 -20.92779 -20.44512 -19.32354 -18.39980 -17.51709 -17.38607 -16.88137 -16.42504 -16.40388 -15.91128 -15.45703 -15.15224 -14.84706 -14.48816 -14.16181 -13.91063 -13.62614 -13.27760 -13.17960 -13.07173 -12.73837 -12.65370 -12.18926 -11.94350 -11.89574 -11.80162 -11.56407 -11.50944 -10.94522 -10.86474 -10.44866 -10.39759 -10.18152 -10.12591 -10.04867 -9.77984 -9.53603 -9.23944 -8.93667 -8.86811 -8.09723 -7.25107 -5.77177 -3.12361 -0.02736 0.39011 1.38726 1.76649 2.00142 2.56215 3.19569 3.39075 3.42142 3.42398 3.46740 3.76099 3.84165 4.10825 4.16449 4.59632 4.60749 4.71347 4.84247 4.89549 4.93968 5.06340 5.15657 5.20905 5.38251 5.42671 5.47179 5.55231 5.68721 5.78579 5.81868 5.85564 5.95754 6.16322 6.21243 6.25486 6.27885 6.49419 6.55871 6.73303 6.88336 7.01771 7.58757 7.99497 8.35709 8.42778 9.20813 9.93692 10.13664 11.41075 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.019185 B = 0.002071 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.132176 B =13517.134203 C =14172.038319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.004 3.996 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.276 1.276 6 H -0.291 1.291 7 C -0.247 4.247 8 H 0.091 0.909 9 N -0.738 5.738 10 C 0.171 3.829 11 H 0.084 0.916 12 C -0.160 4.160 13 C -0.126 4.126 14 H 0.091 0.909 15 C 0.138 3.862 16 N -0.723 5.723 17 C 0.585 3.415 18 O -0.531 6.531 19 C -0.291 4.291 20 C 0.119 3.881 21 N -0.309 5.309 22 N -0.262 5.262 23 C 0.111 3.889 24 C -0.150 4.150 25 C -0.074 4.074 26 C -0.037 4.037 27 Cl 0.019 6.981 28 C 0.157 3.843 29 C -0.145 4.145 30 H 0.259 0.741 31 H 0.362 0.638 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.395 0.605 37 H 0.203 0.797 38 H 0.178 0.822 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.078 0.922 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.340 -14.841 -13.033 35.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.192 4.192 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.203 1.203 6 H -0.217 1.217 7 C -0.377 4.377 8 H 0.108 0.892 9 N -0.377 5.377 10 C 0.060 3.940 11 H 0.102 0.898 12 C -0.201 4.201 13 C -0.146 4.146 14 H 0.109 0.891 15 C 0.014 3.986 16 N -0.374 5.374 17 C 0.373 3.627 18 O -0.409 6.409 19 C -0.306 4.306 20 C -0.061 4.061 21 N -0.130 5.130 22 N -0.027 5.027 23 C -0.015 4.015 24 C -0.172 4.172 25 C -0.098 4.098 26 C -0.066 4.066 27 Cl 0.048 6.952 28 C 0.035 3.965 29 C -0.185 4.185 30 H 0.069 0.931 31 H 0.195 0.805 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.229 0.771 37 H 0.219 0.781 38 H 0.195 0.805 39 H 0.184 0.816 40 H 0.172 0.828 41 H 0.096 0.904 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 29.471 -15.184 -13.426 35.768 hybrid contribution 0.192 1.539 0.291 1.578 sum 29.663 -13.645 -13.135 35.194 Atomic orbital electron populations 1.69703 1.05120 1.25849 1.57431 1.24700 0.95272 0.97287 1.01966 0.86552 0.79256 0.84936 0.77816 1.21037 1.20258 1.21746 1.19138 0.80731 0.94737 1.43065 0.89152 1.42765 1.04065 1.02074 1.88799 1.21517 0.89546 0.89968 0.92991 0.89838 1.23908 0.95985 1.00522 0.99706 1.22637 0.93244 0.99814 0.98865 0.89119 1.21362 0.95351 0.91019 0.90826 1.45804 1.21131 1.27080 1.43417 1.16907 0.81164 0.84720 0.79942 1.91006 1.51934 1.32528 1.65399 1.19865 1.00801 1.00757 1.09141 1.24153 0.98093 0.91389 0.92512 1.77651 0.97179 1.17737 1.20422 1.46085 1.18277 1.13045 1.25278 1.21684 0.86690 1.01729 0.91390 1.20884 0.99638 0.93733 1.02965 1.21344 0.97559 0.97639 0.93253 1.20254 0.95490 0.92337 0.98552 1.98501 1.97375 1.29430 1.69854 1.18935 0.95836 0.87676 0.94033 1.23459 0.98878 0.98991 0.97173 0.93061 0.80457 0.92344 0.90470 0.91404 0.91757 0.77109 0.78065 0.80513 0.81593 0.82811 0.90375 0.91666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.39 13.97 55.49 0.78 -28.61 16 2 C 0.00 0.10 5.50 -17.43 -0.10 0.01 16 3 Si 0.88 22.29 27.73 -169.99 -4.71 17.57 16 4 H -0.28 -7.10 7.11 56.52 0.40 -6.69 16 5 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 6 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 7 C -0.25 -6.94 10.45 -15.06 -0.16 -7.09 16 8 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 9 N -0.74 -17.31 5.20 -52.64 -0.27 -17.58 16 10 C 0.17 3.15 4.48 -67.12 -0.30 2.85 16 11 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 12 C -0.16 -2.51 7.43 -25.92 -0.19 -2.70 16 13 C -0.13 -1.57 3.75 -89.80 -0.34 -1.91 16 14 H 0.09 0.97 8.14 -51.93 -0.42 0.54 16 15 C 0.14 1.71 5.51 -4.04 -0.02 1.69 16 16 N -0.72 -8.00 5.54 -61.65 -0.34 -8.35 16 17 C 0.59 7.59 7.78 -12.90 -0.10 7.49 16 18 O -0.53 -8.24 12.10 5.17 0.06 -8.18 16 19 C -0.29 -3.34 6.16 -104.68 -0.65 -3.98 16 20 C 0.12 1.10 11.44 -17.15 -0.20 0.90 16 21 N -0.31 -3.16 12.58 30.75 0.39 -2.77 16 22 N -0.26 -2.49 3.86 -10.52 -0.04 -2.53 16 23 C 0.11 0.62 11.17 -16.67 -0.19 0.43 16 24 C -0.15 -0.59 9.98 -39.95 -0.40 -0.98 16 25 C -0.07 -0.45 9.87 -39.47 -0.39 -0.84 16 26 C -0.04 -0.37 6.33 -39.46 -0.25 -0.62 16 27 Cl 0.02 0.22 24.35 -51.86 -1.26 -1.04 16 28 C 0.16 1.74 6.74 -84.04 -0.57 1.17 16 29 C -0.15 -2.14 7.39 -25.91 -0.19 -2.34 16 30 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 31 H 0.36 8.43 5.79 -40.82 -0.24 8.19 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.32 7.90 -51.92 -0.41 0.91 16 34 H 0.07 0.97 7.84 -51.93 -0.41 0.56 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.40 3.33 7.43 -40.82 -0.30 3.03 16 37 H 0.20 1.09 7.49 -52.48 -0.39 0.70 16 38 H 0.18 0.42 8.06 -52.48 -0.42 0.00 16 39 H 0.17 0.01 8.06 -52.49 -0.42 -0.42 16 40 H 0.15 0.55 8.06 -52.49 -0.42 0.12 16 41 H 0.08 1.19 8.08 -51.93 -0.42 0.77 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 LS Contribution 365.80 15.07 5.51 5.51 Total: -1.00 -36.22 365.80 -9.07 -45.29 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.14 Total: 6.61 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -4.03 Total: -5.93 kcal Atomic # 7 Polarization: -60.35 SS G_CDS: 0.51 Total: -59.84 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.06 Total: -8.18 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -4.71 Total: 17.57 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -1.26 Total: -1.04 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.22 -9.07 -45.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086143337.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.741 kcal (2) G-P(sol) polarization free energy of solvation -36.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds