Wall clock time and date at job start Wed Apr 1 2020 04:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99818 * 2 1 4 4 H 1.48503 * 109.47143 * 239.99697 * 3 2 1 5 5 H 1.48503 * 109.47615 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47186 * 120.00071 * 3 2 1 7 7 C 1.38812 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00251 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99624 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99913 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.84742 * 336.19478 * 10 9 7 12 12 C 1.53782 * 113.61135 * 107.50069 * 10 9 7 13 13 C 1.53783 * 87.08025 * 89.11866 * 12 10 9 14 14 H 1.09001 * 113.68902 * 270.86906 * 13 12 10 15 15 C 1.53002 * 113.61415 * 139.97725 * 13 12 10 16 16 N 1.46504 * 109.47132 * 87.49989 * 15 13 12 17 17 C 1.34770 * 120.00288 * 179.97438 * 16 15 13 18 18 O 1.21795 * 119.99785 * 5.28974 * 17 16 15 19 19 C 1.41663 * 120.00386 * 185.29127 * 17 16 15 20 20 C 1.38716 * 126.80371 * 92.82286 * 19 17 16 21 21 Cl 1.73602 * 125.91321 * 0.04385 * 20 19 17 22 22 N 1.32410 * 108.16961 * 180.02562 * 20 19 17 23 23 C 1.33210 * 109.83397 * 0.02562 * 22 20 19 24 24 C 1.40656 * 131.77933 * 179.97438 * 23 22 20 25 25 C 1.36288 * 119.38983 * 180.02562 * 24 23 22 26 26 C 1.40169 * 119.60863 * 359.96376 * 25 24 23 27 27 C 1.35275 * 120.12069 * 0.05085 * 26 25 24 28 28 N 1.35952 * 120.63926 * 359.96663 * 27 26 25 29 29 C 1.53777 * 87.08290 * 25.42646 * 13 12 10 30 30 H 0.97007 * 119.99736 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00159 * 359.97438 * 9 7 2 32 32 H 1.08995 * 113.61716 * 334.56738 * 12 10 9 33 33 H 1.09007 * 113.60970 * 203.66541 * 12 10 9 34 34 H 1.08996 * 109.47157 * 327.50492 * 15 13 12 35 35 H 1.08991 * 109.47056 * 207.49648 * 15 13 12 36 36 H 0.97003 * 119.99771 * 0.02562 * 16 15 13 37 37 H 1.08004 * 120.30563 * 359.97438 * 24 23 22 38 38 H 1.07999 * 120.19741 * 179.97438 * 25 24 23 39 39 H 1.07996 * 119.94349 * 180.02562 * 26 25 24 40 40 H 1.07999 * 119.67814 * 180.24582 * 27 26 25 41 41 H 1.09004 * 113.61345 * 89.11774 * 29 13 12 42 42 H 1.08998 * 113.61518 * 220.01553 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0659 -3.5640 -0.4030 12 6 1.9980 -4.4015 1.3458 13 6 0.7198 -5.0787 0.8239 14 1 -0.1919 -4.5246 1.0474 15 6 0.6187 -6.5610 1.1891 16 7 -0.0141 -6.6982 2.5032 17 6 -0.2093 -7.9220 3.0328 18 8 0.2260 -8.9077 2.4650 19 6 -0.9206 -8.0621 4.2498 20 6 -2.2808 -8.2919 4.3957 21 17 -3.4289 -8.4624 3.1047 22 7 -2.5518 -8.3591 5.6900 23 6 -1.4353 -8.1839 6.3952 24 6 -1.1952 -8.1666 7.7810 25 6 0.0723 -7.9614 8.2377 26 6 1.1163 -7.7719 7.3217 27 6 0.8651 -7.7917 5.9926 28 7 -0.3965 -7.9954 5.5288 29 6 1.2605 -4.8290 -0.5938 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 1.8276 -3.7469 2.2005 33 1 2.8269 -5.0927 1.4994 34 1 1.6174 -6.9966 1.2196 35 1 0.0188 -7.0793 0.4411 36 1 -0.2934 -5.9081 2.9919 37 1 -2.0081 -8.3136 8.4768 38 1 0.2714 -7.9451 9.2990 39 1 2.1228 -7.6093 7.6776 40 1 1.6755 -7.6488 5.2931 41 1 1.8877 -5.6370 -0.9706 42 1 0.4947 -4.5195 -1.3050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086547553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:51 Heat of formation + Delta-G solvation = 86.534554 kcal Electronic energy + Delta-G solvation = -27027.281234 eV Core-core repulsion = 23035.803939 eV Total energy + Delta-G solvation = -3991.477296 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.39228 -39.88347 -38.58751 -37.96931 -36.84277 -34.79698 -34.26492 -33.25661 -30.85813 -30.45039 -29.71841 -27.36509 -25.13176 -24.64347 -24.02268 -23.54339 -22.77664 -21.74788 -20.91436 -18.98868 -18.19519 -17.59043 -17.37133 -17.14084 -16.83147 -16.20373 -15.92982 -15.55735 -15.11364 -14.85419 -14.72783 -14.39991 -14.11131 -13.73647 -13.28265 -13.21685 -12.99393 -12.93644 -12.44203 -12.34537 -11.99238 -11.69726 -11.61306 -11.56147 -11.46917 -11.09471 -10.88501 -10.84277 -10.56367 -10.38256 -10.23641 -9.94243 -9.73664 -9.55946 -9.23247 -9.16874 -8.93023 -8.39602 -7.05025 -5.84621 -3.14105 0.16764 0.48318 1.21689 1.73256 2.01769 2.45529 2.94568 3.14270 3.39138 3.43871 3.44850 3.68410 4.04828 4.20744 4.38737 4.51484 4.52111 4.61773 4.91260 4.96706 4.99673 5.16263 5.18580 5.40539 5.43093 5.53962 5.55114 5.61823 5.62898 5.78672 5.85503 5.87847 6.02013 6.13758 6.22717 6.31420 6.35955 6.52048 6.67441 6.82566 6.97938 7.08044 7.24647 7.64254 7.88527 8.34345 9.44998 10.02182 10.36270 11.37613 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.002403 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.536252 B =11650.343799 C =12382.662926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.285 1.285 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.706 5.706 10 C 0.168 3.832 11 H 0.063 0.937 12 C -0.169 4.169 13 C -0.121 4.121 14 H 0.094 0.906 15 C 0.129 3.871 16 N -0.706 5.706 17 C 0.595 3.405 18 O -0.520 6.520 19 C -0.110 4.110 20 C 0.167 3.833 21 Cl 0.022 6.978 22 N -0.481 5.481 23 C 0.251 3.749 24 C -0.081 4.081 25 C -0.088 4.088 26 C -0.131 4.131 27 C 0.061 3.939 28 N -0.327 5.327 29 C -0.147 4.147 30 H 0.257 0.743 31 H 0.385 0.615 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.069 0.931 36 H 0.405 0.595 37 H 0.159 0.841 38 H 0.151 0.849 39 H 0.160 0.840 40 H 0.168 0.832 41 H 0.078 0.922 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.126 -18.824 15.797 24.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.344 5.344 10 C 0.056 3.944 11 H 0.081 0.919 12 C -0.210 4.210 13 C -0.139 4.139 14 H 0.113 0.887 15 C 0.006 3.994 16 N -0.357 5.357 17 C 0.378 3.622 18 O -0.395 6.395 19 C -0.227 4.227 20 C 0.002 3.998 21 Cl 0.051 6.949 22 N -0.202 5.202 23 C 0.010 3.990 24 C -0.101 4.101 25 C -0.112 4.112 26 C -0.151 4.151 27 C -0.062 4.062 28 N 0.002 4.998 29 C -0.187 4.187 30 H 0.067 0.933 31 H 0.219 0.781 32 H 0.084 0.916 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.087 0.913 36 H 0.240 0.760 37 H 0.177 0.823 38 H 0.168 0.832 39 H 0.177 0.823 40 H 0.186 0.814 41 H 0.096 0.904 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.549 -19.488 15.467 24.886 hybrid contribution 0.500 1.386 -0.149 1.481 sum -0.049 -18.101 15.318 23.713 Atomic orbital electron populations 1.69650 1.05144 1.25966 1.57221 1.24768 0.95539 0.97808 1.02677 0.86248 0.78529 0.83373 0.77897 1.21168 1.21653 1.21218 1.19232 0.91073 0.83968 1.43292 0.91053 1.42169 1.05692 0.99423 1.87130 1.21041 0.95139 0.85608 0.92642 0.91922 1.23906 0.95573 0.99653 1.01899 1.22735 0.99709 0.92670 0.98833 0.88737 1.21614 0.97764 0.97481 0.82529 1.46184 1.60611 1.07524 1.21346 1.15405 0.79474 0.84124 0.83197 1.90893 1.48248 1.37832 1.62520 1.19531 0.93924 1.24658 0.84590 1.21163 0.87099 1.01896 0.89680 1.98425 1.58028 1.95817 1.42640 1.70143 1.24558 1.23865 1.01640 1.20759 0.81877 1.03876 0.92498 1.20377 0.98863 1.01242 0.89599 1.21188 0.91467 0.97361 1.01161 1.20981 1.01581 1.01892 0.90627 1.21792 0.85151 1.01889 0.97371 1.42485 1.08411 1.42617 1.06316 1.23448 1.00516 0.99713 0.95006 0.93336 0.78088 0.91550 0.91416 0.91116 0.91259 0.76006 0.82330 0.83170 0.82276 0.81438 0.90387 0.91203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.49 13.06 55.49 0.72 -26.77 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 21.87 29.55 -169.99 -5.02 16.85 16 4 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 6 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.24 -6.59 9.97 -15.06 -0.15 -6.74 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.71 -16.97 5.31 -52.64 -0.28 -17.25 16 10 C 0.17 3.15 4.56 -67.12 -0.31 2.84 16 11 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 12 C -0.17 -2.65 7.43 -25.92 -0.19 -2.85 16 13 C -0.12 -1.71 3.63 -89.81 -0.33 -2.04 16 14 H 0.09 1.47 8.14 -51.93 -0.42 1.04 16 15 C 0.13 1.63 5.52 -4.04 -0.02 1.61 16 16 N -0.71 -8.68 5.54 -63.21 -0.35 -9.03 16 17 C 0.60 8.23 7.14 -14.96 -0.11 8.12 16 18 O -0.52 -8.76 17.10 5.10 0.09 -8.67 16 19 C -0.11 -1.45 6.52 -83.42 -0.54 -2.00 16 20 C 0.17 2.29 7.77 -17.13 -0.13 2.16 16 21 Cl 0.02 0.29 29.11 -51.86 -1.51 -1.22 16 22 N -0.48 -6.48 11.25 -9.38 -0.11 -6.58 16 23 C 0.25 2.80 7.77 -156.06 -1.21 1.58 16 24 C -0.08 -0.58 10.10 -39.37 -0.40 -0.97 16 25 C -0.09 -0.42 10.07 -39.56 -0.40 -0.81 16 26 C -0.13 -0.66 10.00 -39.91 -0.40 -1.06 16 27 C 0.06 0.48 10.82 -16.78 -0.18 0.30 16 28 N -0.33 -3.61 2.96 -60.11 -0.18 -3.79 16 29 C -0.15 -2.25 7.39 -25.92 -0.19 -2.44 16 30 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 31 H 0.39 9.83 7.90 -40.82 -0.32 9.51 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.07 0.93 7.90 -51.93 -0.41 0.52 16 34 H 0.07 0.90 7.84 -51.93 -0.41 0.49 16 35 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.41 4.59 8.43 -40.82 -0.34 4.25 16 37 H 0.16 0.79 8.06 -52.48 -0.42 0.37 16 38 H 0.15 0.23 8.06 -52.49 -0.42 -0.19 16 39 H 0.16 0.32 8.06 -52.49 -0.42 -0.10 16 40 H 0.17 1.11 8.06 -52.49 -0.42 0.69 16 41 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 42 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 LS Contribution 378.61 15.07 5.71 5.71 Total: -1.00 -33.66 378.61 -10.84 -44.50 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -5.25 Total: 8.98 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: -4.66 Total: -2.72 kcal Atomic # 7 Polarization: -63.23 SS G_CDS: -0.19 Total: -63.42 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Atomic # 17 Polarization: 0.29 SS G_CDS: -1.51 Total: -1.22 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.66 -10.84 -44.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086547553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.037 kcal (2) G-P(sol) polarization free energy of solvation -33.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.502 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds