Wall clock time and date at job start Wed Apr 1 2020 04:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86798 * 119.99818 * 2 1 4 4 H 1.48503 * 109.47143 * 239.99697 * 3 2 1 5 5 H 1.48503 * 109.47615 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47186 * 120.00071 * 3 2 1 7 7 C 1.38812 * 120.00198 * 179.97438 * 2 1 3 8 8 H 1.07992 * 120.00251 * 180.02562 * 7 2 1 9 9 N 1.36934 * 119.99624 * 0.02562 * 7 2 1 10 10 C 1.46507 * 119.99913 * 180.02562 * 9 7 2 11 11 H 1.09000 * 112.84742 * 336.19478 * 10 9 7 12 12 C 1.53782 * 113.61135 * 107.50069 * 10 9 7 13 13 C 1.53783 * 87.08025 * 89.11866 * 12 10 9 14 14 H 1.09001 * 113.68902 * 270.86906 * 13 12 10 15 15 C 1.53002 * 113.61415 * 139.97725 * 13 12 10 16 16 N 1.46504 * 109.47132 * 87.49989 * 15 13 12 17 17 C 1.34770 * 120.00288 * 179.97438 * 16 15 13 18 18 O 1.21795 * 119.99785 * 5.28974 * 17 16 15 19 19 C 1.41663 * 120.00386 * 185.29127 * 17 16 15 20 20 C 1.38716 * 126.80371 * 92.82286 * 19 17 16 21 21 Cl 1.73602 * 125.91321 * 0.04385 * 20 19 17 22 22 N 1.32410 * 108.16961 * 180.02562 * 20 19 17 23 23 C 1.33210 * 109.83397 * 0.02562 * 22 20 19 24 24 C 1.40656 * 131.77933 * 179.97438 * 23 22 20 25 25 C 1.36288 * 119.38983 * 180.02562 * 24 23 22 26 26 C 1.40169 * 119.60863 * 359.96376 * 25 24 23 27 27 C 1.35275 * 120.12069 * 0.05085 * 26 25 24 28 28 N 1.35952 * 120.63926 * 359.96663 * 27 26 25 29 29 C 1.53777 * 87.08290 * 25.42646 * 13 12 10 30 30 H 0.97007 * 119.99736 * 0.02562 * 1 2 3 31 31 H 0.96998 * 120.00159 * 359.97438 * 9 7 2 32 32 H 1.08995 * 113.61716 * 334.56738 * 12 10 9 33 33 H 1.09007 * 113.60970 * 203.66541 * 12 10 9 34 34 H 1.08996 * 109.47157 * 327.50492 * 15 13 12 35 35 H 1.08991 * 109.47056 * 207.49648 * 15 13 12 36 36 H 0.97003 * 119.99771 * 0.02562 * 16 15 13 37 37 H 1.08004 * 120.30563 * 359.97438 * 24 23 22 38 38 H 1.07999 * 120.19741 * 179.97438 * 25 24 23 39 39 H 1.07996 * 119.94349 * 180.02562 * 26 25 24 40 40 H 1.07999 * 119.67814 * 180.24582 * 27 26 25 41 41 H 1.09004 * 113.61345 * 89.11774 * 29 13 12 42 42 H 1.08998 * 113.61518 * 220.01553 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.1039 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 1 3.0659 -3.5640 -0.4030 12 6 1.9980 -4.4015 1.3458 13 6 0.7198 -5.0787 0.8239 14 1 -0.1919 -4.5246 1.0474 15 6 0.6187 -6.5610 1.1891 16 7 -0.0141 -6.6982 2.5032 17 6 -0.2093 -7.9220 3.0328 18 8 0.2260 -8.9077 2.4650 19 6 -0.9206 -8.0621 4.2498 20 6 -2.2808 -8.2919 4.3957 21 17 -3.4289 -8.4624 3.1047 22 7 -2.5518 -8.3591 5.6900 23 6 -1.4353 -8.1839 6.3952 24 6 -1.1952 -8.1666 7.7810 25 6 0.0723 -7.9614 8.2377 26 6 1.1163 -7.7719 7.3217 27 6 0.8651 -7.7917 5.9926 28 7 -0.3965 -7.9954 5.5288 29 6 1.2605 -4.8290 -0.5938 30 1 -0.4850 0.8401 -0.0004 31 1 0.3556 -2.3880 0.0005 32 1 1.8276 -3.7469 2.2005 33 1 2.8269 -5.0927 1.4994 34 1 1.6174 -6.9966 1.2196 35 1 0.0188 -7.0793 0.4411 36 1 -0.2934 -5.9081 2.9919 37 1 -2.0081 -8.3136 8.4768 38 1 0.2714 -7.9451 9.2990 39 1 2.1228 -7.6093 7.6776 40 1 1.6755 -7.6488 5.2931 41 1 1.8877 -5.6370 -0.9706 42 1 0.4947 -4.5195 -1.3050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086547553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:50 Heat of formation + Delta-G solvation = 64.804423 kcal Electronic energy + Delta-G solvation = -27028.223523 eV Core-core repulsion = 23035.803939 eV Total energy + Delta-G solvation = -3992.419585 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.15069 -40.98710 -39.88991 -38.70777 -37.72097 -36.10764 -35.10192 -34.85978 -32.19519 -31.45458 -30.74005 -28.56570 -26.44055 -25.88624 -25.11137 -24.61719 -23.62280 -23.00537 -21.84051 -20.12388 -19.44798 -19.17090 -18.25388 -17.99726 -17.75776 -16.94709 -16.88047 -16.65996 -16.38995 -15.94884 -15.75313 -15.54579 -15.47346 -15.04989 -14.69237 -14.55533 -14.05550 -13.77491 -13.47964 -13.29215 -12.95542 -12.93583 -12.92448 -12.63426 -12.59984 -12.39575 -12.21694 -12.19948 -12.08126 -11.85321 -11.54244 -11.48431 -11.25802 -10.94518 -10.80192 -10.25464 -9.98088 -9.12685 -9.00267 -7.95341 -5.23774 -0.42273 -0.18572 0.33687 0.80806 1.21592 1.47808 1.50263 1.55657 1.56439 2.16855 2.36834 2.55795 2.98936 3.37227 3.45007 3.52195 3.69940 3.72394 3.76909 3.87181 3.90259 4.08420 4.13073 4.31643 4.38409 4.41207 4.59140 4.70468 4.72599 4.87025 4.93022 4.98333 4.99676 5.07065 5.12603 5.16452 5.33703 5.38221 5.42766 5.52801 5.65900 5.70524 6.20954 6.27964 6.28104 6.84862 7.33046 8.10779 8.32378 9.27735 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.002403 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.536252 B =11650.343799 C =12382.662926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.076 4.076 3 Si 0.972 3.028 4 H -0.278 1.278 5 H -0.298 1.298 6 H -0.277 1.277 7 C -0.243 4.243 8 H 0.078 0.922 9 N -0.721 5.721 10 C 0.144 3.856 11 H 0.062 0.938 12 C -0.151 4.151 13 C -0.105 4.105 14 H 0.078 0.922 15 C 0.138 3.862 16 N -0.697 5.697 17 C 0.606 3.394 18 O -0.555 6.555 19 C -0.139 4.139 20 C 0.152 3.848 21 Cl 0.015 6.985 22 N -0.516 5.516 23 C 0.240 3.760 24 C -0.099 4.099 25 C -0.061 4.061 26 C -0.107 4.107 27 C 0.029 3.971 28 N -0.328 5.328 29 C -0.134 4.134 30 H 0.251 0.749 31 H 0.373 0.627 32 H 0.047 0.953 33 H 0.096 0.904 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.410 0.590 37 H 0.178 0.822 38 H 0.195 0.805 39 H 0.200 0.800 40 H 0.175 0.825 41 H 0.109 0.891 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.312 -19.502 18.205 26.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.204 1.204 5 H -0.224 1.224 6 H -0.203 1.203 7 C -0.374 4.374 8 H 0.095 0.905 9 N -0.359 5.359 10 C 0.034 3.966 11 H 0.080 0.920 12 C -0.192 4.192 13 C -0.124 4.124 14 H 0.096 0.904 15 C 0.015 3.985 16 N -0.348 5.348 17 C 0.390 3.610 18 O -0.433 6.433 19 C -0.255 4.255 20 C -0.014 4.014 21 Cl 0.043 6.957 22 N -0.238 5.238 23 C 0.000 4.000 24 C -0.119 4.119 25 C -0.085 4.085 26 C -0.127 4.127 27 C -0.094 4.094 28 N 0.002 4.998 29 C -0.173 4.173 30 H 0.059 0.941 31 H 0.205 0.795 32 H 0.066 0.934 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.246 0.754 37 H 0.195 0.805 38 H 0.213 0.787 39 H 0.217 0.783 40 H 0.193 0.807 41 H 0.127 0.873 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.939 -20.191 17.886 27.043 hybrid contribution -0.113 1.535 -0.722 1.700 sum 1.825 -18.656 17.165 25.417 Atomic orbital electron populations 1.69810 1.06620 1.26125 1.59484 1.25557 0.96350 1.01101 1.03783 0.85230 0.77190 0.79221 0.78233 1.20423 1.22407 1.20274 1.19636 0.91537 0.85163 1.41094 0.90455 1.42323 1.05316 1.00645 1.87627 1.21388 0.95115 0.84833 0.95293 0.92003 1.23720 0.97162 0.99218 0.99096 1.22509 0.98461 0.93449 0.97951 0.90365 1.21493 0.98339 0.95982 0.82672 1.46116 1.60074 1.07459 1.21122 1.15397 0.78696 0.83737 0.83150 1.90860 1.49988 1.38865 1.63594 1.19296 0.93801 1.27118 0.85317 1.21286 0.87396 1.02730 0.89945 1.98402 1.58336 1.95922 1.42997 1.70072 1.26188 1.25852 1.01677 1.21405 0.81428 1.03323 0.93871 1.20820 1.00891 1.02239 0.87950 1.21785 0.89956 0.93474 1.03284 1.21605 1.03530 0.98281 0.89263 1.22334 0.84304 1.03659 0.99090 1.42565 1.09418 1.42441 1.05417 1.23356 0.99968 0.98781 0.95172 0.94061 0.79452 0.93450 0.88532 0.90141 0.91232 0.75447 0.80487 0.78742 0.78294 0.80727 0.87289 0.92493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.57 13.06 21.65 0.28 -58.29 16 2 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 3 Si 0.97 45.25 29.55 68.60 2.03 47.28 16 4 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 5 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 6 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.24 -13.12 9.97 84.03 0.84 -12.28 16 8 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 9 N -0.72 -35.07 5.31 -320.45 -1.70 -36.77 16 10 C 0.14 5.27 4.56 45.52 0.21 5.48 16 11 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 12 C -0.15 -4.52 7.43 31.12 0.23 -4.29 16 13 C -0.10 -2.88 3.63 -10.27 -0.04 -2.92 16 14 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 15 C 0.14 3.32 5.52 86.38 0.48 3.79 16 16 N -0.70 -16.93 5.54 -472.07 -2.62 -19.55 16 17 C 0.61 16.91 7.14 85.09 0.61 17.52 16 18 O -0.56 -18.87 17.10 -4.65 -0.08 -18.95 16 19 C -0.14 -3.73 6.52 39.07 0.25 -3.48 16 20 C 0.15 4.37 7.77 84.72 0.66 5.03 16 21 Cl 0.01 0.40 29.11 -2.72 -0.08 0.33 16 22 N -0.52 -14.33 11.25 -183.60 -2.07 -16.39 16 23 C 0.24 5.23 7.77 134.00 1.04 6.27 16 24 C -0.10 -1.17 10.10 22.41 0.23 -0.94 16 25 C -0.06 -0.29 10.07 22.28 0.22 -0.07 16 26 C -0.11 -0.62 10.00 22.06 0.22 -0.40 16 27 C 0.03 0.40 10.82 83.37 0.90 1.30 16 28 N -0.33 -7.07 2.96 -344.08 -1.02 -8.09 16 29 C -0.13 -3.91 7.39 31.12 0.23 -3.68 16 30 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 31 H 0.37 19.62 7.90 -92.71 -0.73 18.88 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.10 2.36 7.90 -2.38 -0.02 2.34 16 34 H 0.08 1.84 7.84 -2.39 -0.02 1.82 16 35 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.41 9.30 8.43 -92.71 -0.78 8.51 16 37 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 38 H 0.20 -0.71 8.06 -2.91 -0.02 -0.73 16 39 H 0.20 -0.41 8.06 -2.91 -0.02 -0.43 16 40 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 41 H 0.11 2.55 8.10 -2.38 -0.02 2.53 16 42 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -76.56 378.61 0.86 -75.70 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.43 Total: 27.21 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: 6.55 Total: 7.53 kcal Atomic # 7 Polarization: -131.97 SS G_CDS: -7.12 Total: -139.09 kcal Atomic # 8 Polarization: -18.87 SS G_CDS: -0.08 Total: -18.95 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.28 kcal Atomic # 17 Polarization: 0.40 SS G_CDS: -0.08 Total: 0.33 kcal Total: -76.56 0.86 -75.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086547553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.502 kcal (2) G-P(sol) polarization free energy of solvation -76.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds