Wall clock time and date at job start Wed Apr 1 2020 05:31:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86796 * 120.00114 * 2 1 4 4 H 1.48502 * 109.47075 * 240.00012 * 3 2 1 5 5 H 1.48498 * 109.47083 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47227 * 119.99928 * 3 2 1 7 7 C 1.38815 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00165 * 197.35964 * 7 2 1 9 9 N 1.36941 * 119.99617 * 17.35875 * 7 2 1 10 10 C 1.46932 * 120.62596 * 207.69663 * 9 7 2 11 11 C 1.53193 * 108.76078 * 233.59333 * 10 9 7 12 12 C 1.53042 * 109.31644 * 305.34554 * 11 10 9 13 13 H 1.09002 * 109.45510 * 301.37115 * 12 11 10 14 14 N 1.46495 * 109.46161 * 181.40197 * 12 11 10 15 15 C 1.34780 * 120.00291 * 85.24465 * 14 12 11 16 16 O 1.21536 * 119.99546 * 359.72724 * 15 14 12 17 17 C 1.47854 * 119.99869 * 179.72277 * 15 14 12 18 18 N 1.28996 * 124.85550 * 359.70005 * 17 15 14 19 19 C 1.33162 * 118.21288 * 179.83427 * 18 17 15 20 20 C 1.41356 * 129.83758 * 180.16803 * 19 18 17 21 21 N 1.31016 * 120.67030 * 180.30379 * 20 19 18 22 22 C 1.32356 * 122.68146 * 0.02562 * 21 20 19 23 23 C 1.36531 * 121.01607 * 359.97438 * 22 21 20 24 24 C 1.39645 * 119.13855 * 0.02562 * 23 22 21 25 25 S 1.75911 * 132.43083 * 179.97438 * 24 23 22 26 26 C 1.53036 * 109.52469 * 61.38526 * 12 11 10 27 27 H 1.09000 * 109.49678 * 178.67747 * 26 12 11 28 28 O 1.42905 * 109.49739 * 58.58231 * 26 12 11 29 29 C 1.46924 * 120.63455 * 27.67439 * 9 7 2 30 30 H 0.97003 * 120.00008 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.58811 * 353.37284 * 10 9 7 32 32 H 1.08998 * 109.58567 * 113.65803 * 10 9 7 33 33 H 1.09008 * 109.48476 * 185.39894 * 11 10 9 34 34 H 1.09001 * 109.50810 * 65.30701 * 11 10 9 35 35 H 0.97005 * 119.99818 * 264.97757 * 14 12 11 36 36 H 1.08000 * 119.66733 * 0.30989 * 20 19 18 37 37 H 1.08005 * 119.49398 * 179.97438 * 22 21 20 38 38 H 1.08002 * 120.43090 * 180.02562 * 23 22 21 39 39 H 0.96700 * 113.99527 * 179.97438 * 28 26 12 40 40 H 1.09001 * 109.58730 * 6.62532 * 29 9 7 41 41 H 1.09004 * 109.70160 * 246.27050 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2852 2.7464 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0534 -1.2234 0.2796 9 7 1.3723 -2.3612 -0.3528 10 6 1.8191 -3.6547 0.1823 11 6 2.0741 -4.6102 -0.9876 12 6 0.8182 -4.6906 -1.8586 13 1 -0.0208 -5.0367 -1.2549 14 7 1.0472 -5.6293 -2.9597 15 6 0.8408 -6.9483 -2.7748 16 8 0.4696 -7.3594 -1.6930 17 6 1.0660 -7.8950 -3.8879 18 7 1.4532 -7.5616 -5.0724 19 6 1.6179 -8.5261 -5.9756 20 6 2.0306 -8.4421 -7.3250 21 7 2.1271 -9.5205 -8.0627 22 6 1.8496 -10.7295 -7.6009 23 6 1.4430 -10.9135 -6.3106 24 6 1.3199 -9.8040 -5.4717 25 16 0.8358 -9.6363 -3.7888 26 6 0.5005 -3.3057 -2.4270 27 1 -0.3803 -3.3680 -3.0660 28 8 1.6131 -2.8372 -3.1917 29 6 0.2277 -2.3350 -1.2736 30 1 -0.4850 0.8401 -0.0004 31 1 2.7399 -3.5172 0.7492 32 1 1.0477 -4.0672 0.8326 33 1 2.3135 -5.6013 -0.6021 34 1 2.9078 -4.2405 -1.5846 35 1 1.3435 -5.3012 -3.8231 36 1 2.2690 -7.4793 -7.7522 37 1 1.9464 -11.5836 -8.2548 38 1 1.2195 -11.9044 -5.9435 39 1 1.4810 -1.9629 -3.5831 40 1 0.0985 -1.3268 -1.6674 41 1 -0.6759 -2.6397 -0.7455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001090413981.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:59 Heat of formation + Delta-G solvation = -6.390535 kcal Electronic energy + Delta-G solvation = -27558.269734 eV Core-core repulsion = 23564.806611 eV Total energy + Delta-G solvation = -3993.463123 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.07394 -41.22934 -39.61996 -38.70687 -36.50377 -35.86762 -33.98168 -33.27064 -32.01280 -31.00536 -30.65621 -27.77179 -26.64436 -25.39387 -24.17915 -23.76648 -23.34324 -21.52905 -21.08891 -19.92740 -19.22745 -18.80689 -18.25489 -17.53595 -17.15117 -16.99527 -16.88267 -16.72250 -15.97245 -15.78605 -15.67002 -15.41585 -15.33653 -15.26801 -15.01030 -14.56238 -13.94675 -13.78738 -13.70900 -13.65455 -13.15410 -12.81563 -12.77434 -12.62944 -12.39279 -12.27623 -12.10049 -11.86162 -11.82273 -11.79773 -11.45766 -11.08289 -10.78349 -10.76590 -10.57107 -10.38649 -10.13868 -9.51757 -8.67512 -7.86925 -5.30286 -1.30903 -0.26325 -0.18500 0.31352 0.64784 1.49933 1.51372 1.58486 1.75765 1.80001 2.52456 2.53087 2.59039 3.21781 3.25322 3.35863 3.39119 3.51877 3.67092 3.79825 3.83188 3.97616 4.23227 4.32488 4.37332 4.51332 4.59482 4.61643 4.66549 4.70290 4.83274 4.91335 5.06575 5.16859 5.26814 5.31768 5.43287 5.56761 5.66302 5.95793 6.29727 6.38254 6.74154 6.82699 6.92146 7.15659 7.83639 8.36133 9.19464 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.024995 B = 0.002304 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.939857 B =12151.097598 C =12841.224718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.046 4.046 3 Si 0.966 3.034 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.281 1.281 7 C -0.254 4.254 8 H 0.062 0.938 9 N -0.598 5.598 10 C 0.145 3.855 11 C -0.121 4.121 12 C 0.167 3.833 13 H 0.087 0.913 14 N -0.678 5.678 15 C 0.591 3.409 16 O -0.550 6.550 17 C 0.037 3.963 18 N -0.417 5.417 19 C -0.004 4.004 20 C 0.196 3.804 21 N -0.489 5.489 22 C 0.115 3.885 23 C -0.121 4.121 24 C -0.161 4.161 25 S 0.196 5.804 26 C 0.090 3.910 27 H 0.070 0.930 28 O -0.562 6.562 29 C 0.151 3.849 30 H 0.251 0.749 31 H 0.057 0.943 32 H 0.017 0.983 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.420 0.580 36 H 0.190 0.810 37 H 0.208 0.792 38 H 0.178 0.822 39 H 0.387 0.613 40 H 0.074 0.926 41 H 0.008 0.992 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.697 -22.173 -16.422 27.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.242 4.242 3 Si 0.794 3.206 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.207 1.207 7 C -0.384 4.384 8 H 0.079 0.921 9 N -0.321 5.321 10 C 0.019 3.981 11 C -0.161 4.161 12 C 0.063 3.937 13 H 0.105 0.895 14 N -0.328 5.328 15 C 0.372 3.628 16 O -0.427 6.427 17 C -0.247 4.247 18 N -0.135 5.135 19 C -0.130 4.130 20 C 0.024 3.976 21 N -0.199 5.199 22 C -0.035 4.035 23 C -0.145 4.145 24 C -0.287 4.287 25 S 0.453 5.547 26 C 0.029 3.971 27 H 0.088 0.912 28 O -0.369 6.369 29 C 0.024 3.976 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.035 0.965 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.257 0.743 36 H 0.207 0.793 37 H 0.224 0.776 38 H 0.195 0.805 39 H 0.236 0.764 40 H 0.092 0.908 41 H 0.026 0.974 Dipole moment (debyes) X Y Z Total from point charges 1.587 -22.992 -15.511 27.780 hybrid contribution 0.037 1.962 0.026 1.962 sum 1.623 -21.030 -15.486 26.167 Atomic orbital electron populations 1.70149 1.06409 1.25958 1.55564 1.25679 0.95990 1.01110 1.01394 0.85370 0.77542 0.79421 0.78236 1.20284 1.22116 1.20731 1.19376 0.92768 0.85875 1.40392 0.92072 1.44104 1.35647 1.01958 1.50412 1.20972 0.97692 0.85838 0.93582 1.22109 0.97584 0.98995 0.97458 1.20952 0.98790 0.86670 0.87337 0.89509 1.45831 1.65637 1.04764 1.16588 1.17097 0.78001 0.82383 0.85282 1.90842 1.48201 1.78126 1.25570 1.27053 1.05470 0.97390 0.94782 1.65763 1.11244 1.36466 1.00049 1.20358 1.07663 0.87156 0.97817 1.23169 0.89899 0.99102 0.85380 1.67626 1.15342 0.99550 1.37341 1.23173 0.91547 0.95410 0.93398 1.21538 1.00851 0.98373 0.93760 1.24880 1.04639 0.99619 0.99545 1.85108 1.64184 1.01738 1.03666 1.22533 0.88944 0.92531 0.93133 0.91231 1.86332 1.41600 1.39309 1.69625 1.21323 0.88480 0.98410 0.89422 0.93999 0.92432 0.96514 0.91885 0.91709 0.74258 0.79329 0.77581 0.80496 0.76377 0.90778 0.97354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.10 11.19 21.65 0.24 -52.86 16 2 C -0.05 -2.51 4.91 84.86 0.42 -2.09 16 3 Si 0.97 43.79 29.59 68.60 2.03 45.82 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 6 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 7 C -0.25 -13.65 9.59 84.03 0.81 -12.84 16 8 H 0.06 3.27 7.89 -2.91 -0.02 3.25 16 9 N -0.60 -29.28 2.94 -699.07 -2.05 -31.33 16 10 C 0.15 6.20 6.52 86.36 0.56 6.76 16 11 C -0.12 -4.45 5.51 30.67 0.17 -4.28 16 12 C 0.17 5.72 2.20 45.02 0.10 5.82 16 13 H 0.09 3.17 7.57 -2.39 -0.02 3.15 16 14 N -0.68 -20.15 5.05 -445.29 -2.25 -22.40 16 15 C 0.59 17.92 7.80 86.79 0.68 18.59 16 16 O -0.55 -19.44 16.57 -3.83 -0.06 -19.50 16 17 C 0.04 0.95 7.41 87.66 0.65 1.59 16 18 N -0.42 -10.10 10.08 -180.90 -1.82 -11.92 16 19 C 0.00 -0.08 6.99 40.28 0.28 0.20 16 20 C 0.20 3.27 11.30 85.58 0.97 4.24 16 21 N -0.49 -7.43 10.28 -194.81 -2.00 -9.44 16 22 C 0.12 1.14 11.12 84.21 0.94 2.07 16 23 C -0.12 -1.30 10.09 22.21 0.22 -1.07 16 24 C -0.16 -2.84 6.62 23.18 0.15 -2.69 16 25 S 0.20 3.97 23.17 -56.49 -1.31 2.66 16 26 C 0.09 3.14 3.38 30.67 0.10 3.24 16 27 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 28 O -0.56 -18.97 12.08 -148.98 -1.80 -20.77 16 29 C 0.15 6.79 4.95 86.36 0.43 7.21 16 30 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 31 H 0.06 2.42 7.93 -2.39 -0.02 2.40 16 32 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.06 2.49 7.61 -2.39 -0.02 2.48 16 35 H 0.42 11.59 7.88 -92.70 -0.73 10.86 16 36 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.21 0.37 8.06 -2.91 -0.02 0.35 16 38 H 0.18 0.72 8.06 -2.91 -0.02 0.70 16 39 H 0.39 11.28 9.08 -74.06 -0.67 10.61 16 40 H 0.07 3.69 6.04 -2.39 -0.01 3.67 16 41 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 Total: -1.00 -67.81 359.70 -2.85 -70.66 By element: Atomic # 1 Polarization: 22.61 SS G_CDS: -0.29 Total: 22.32 kcal Atomic # 6 Polarization: 20.29 SS G_CDS: 6.47 Total: 26.76 kcal Atomic # 7 Polarization: -120.07 SS G_CDS: -7.88 Total: -127.95 kcal Atomic # 8 Polarization: -38.41 SS G_CDS: -1.86 Total: -40.27 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 3.97 SS G_CDS: -1.31 Total: 2.66 kcal Total: -67.81 -2.85 -70.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090413981.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.271 kcal (2) G-P(sol) polarization free energy of solvation -67.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds