Wall clock time and date at job start Wed Apr 1 2020 04:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86800 * 119.99586 * 2 1 4 4 H 1.48500 * 109.47045 * 239.99927 * 3 2 1 5 5 H 1.48501 * 109.47088 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47005 * 119.99957 * 3 2 1 7 7 C 1.38803 * 120.00339 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00369 * 163.09345 * 7 2 1 9 9 N 1.36947 * 120.00007 * 343.09271 * 7 2 1 10 10 C 1.46923 * 120.62888 * 331.80339 * 9 7 2 11 11 C 1.53188 * 108.76564 * 233.63964 * 10 9 7 12 12 C 1.53042 * 109.31071 * 305.34399 * 11 10 9 13 13 H 1.08998 * 109.46687 * 301.37173 * 12 11 10 14 14 N 1.46505 * 109.45817 * 181.39650 * 12 11 10 15 15 C 1.34782 * 119.99392 * 84.97936 * 14 12 11 16 16 O 1.21618 * 120.00345 * 359.97438 * 15 14 12 17 17 C 1.47307 * 119.99496 * 180.02562 * 15 14 12 18 18 C 1.38363 * 120.57461 * 359.97438 * 17 15 14 19 19 C 1.38868 * 121.15207 * 180.02562 * 18 17 15 20 20 C 1.35581 * 122.43506 * 0.26260 * 19 18 17 21 21 C 1.41630 * 120.90187 * 359.44252 * 20 19 18 22 22 N 1.32398 * 131.04217 * 180.18884 * 21 20 19 23 23 S 1.55557 * 109.37880 * 180.34638 * 22 21 20 24 24 N 1.55556 * 100.17328 * 359.97438 * 23 22 21 25 25 C 1.31858 * 109.44579 * 359.97438 * 24 23 22 26 26 C 1.53042 * 109.52403 * 61.39128 * 12 11 10 27 27 H 1.08992 * 109.50249 * 58.60670 * 26 12 11 28 28 O 1.42910 * 109.49492 * 178.67567 * 26 12 11 29 29 C 1.46923 * 120.62858 * 151.82783 * 9 7 2 30 30 H 0.97002 * 120.00809 * 0.02562 * 1 2 3 31 31 H 1.08997 * 109.58854 * 353.42432 * 10 9 7 32 32 H 1.09003 * 109.58455 * 113.84389 * 10 9 7 33 33 H 1.08997 * 109.48452 * 185.40485 * 11 10 9 34 34 H 1.09001 * 109.50966 * 65.30595 * 11 10 9 35 35 H 0.96997 * 120.00238 * 264.97212 * 14 12 11 36 36 H 1.07999 * 119.42576 * 359.97438 * 18 17 15 37 37 H 1.08005 * 118.78191 * 179.97438 * 19 18 17 38 38 H 1.07997 * 119.54770 * 179.71933 * 20 19 18 39 39 H 0.96700 * 113.99479 * 179.97438 * 28 26 12 40 40 H 1.09001 * 109.59235 * 6.58561 * 29 9 7 41 41 H 1.08998 * 109.70440 * 246.22577 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6965 -1.2125 5 1 1.2850 2.7465 -0.0006 6 1 3.1038 1.6965 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0552 -1.2224 -0.2714 9 7 1.3700 -2.3623 0.3460 10 6 0.2264 -2.3402 1.2680 11 6 0.4988 -3.3188 2.4146 12 6 0.8132 -4.7006 1.8367 13 1 -0.0271 -5.0411 1.2316 14 7 1.0416 -5.6471 2.9314 15 6 -0.0030 -6.2698 3.5126 16 8 -1.1350 -6.0457 3.1286 17 6 0.2266 -7.2210 4.6137 18 6 1.5094 -7.4845 5.0602 19 6 1.7396 -8.3793 6.0969 20 6 0.7355 -9.0430 6.7211 21 6 -0.6147 -8.8404 6.3445 22 7 -1.7358 -9.3688 6.8102 23 16 -2.9452 -8.7933 6.0191 24 7 -2.2033 -7.8442 5.0350 25 6 -0.9054 -7.9071 5.2589 26 6 2.0684 -4.6169 0.9650 27 1 2.9035 -4.2532 1.5636 28 8 2.3791 -5.9134 0.4506 29 6 1.8141 -3.6528 -0.1981 30 1 -0.4851 0.8400 -0.0004 31 1 0.0992 -1.3344 1.6685 32 1 -0.6768 -2.6411 0.7372 33 1 -0.3815 -3.3838 3.0541 34 1 1.3487 -2.9670 2.9994 35 1 1.9444 -5.8256 3.2378 36 1 2.3464 -6.9861 4.5939 37 1 2.7565 -8.5566 6.4147 38 1 0.9681 -9.7322 7.5194 39 1 3.1650 -5.9351 -0.1125 40 1 2.7346 -3.5132 -0.7648 41 1 1.0422 -4.0620 -0.8498 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001090691448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:45:09 Heat of formation + Delta-G solvation = 26.794918 kcal Electronic energy + Delta-G solvation = -27892.283970 eV Core-core repulsion = 23900.259876 eV Total energy + Delta-G solvation = -3992.024094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.11874 -39.59541 -37.88993 -36.57574 -35.41289 -34.29933 -33.94192 -32.07660 -30.87006 -29.67136 -28.46844 -27.82998 -25.31446 -23.53879 -22.74121 -22.33096 -21.65581 -20.29207 -19.82412 -19.31876 -17.97620 -17.32527 -16.94425 -16.45580 -16.36485 -16.03602 -15.57963 -15.10338 -14.86165 -14.49324 -14.20011 -13.91702 -13.62451 -13.20562 -13.06570 -12.78182 -12.49335 -12.31040 -12.20525 -12.03234 -12.01924 -11.64784 -11.57262 -11.19599 -11.10961 -10.95047 -10.86712 -10.67397 -10.34687 -10.27691 -9.95650 -9.82065 -9.72076 -9.42913 -9.05806 -8.83069 -8.64459 -8.44152 -6.77500 -5.85314 -3.30244 -0.53083 1.06538 1.19029 1.24604 1.51194 2.77221 3.17376 3.34654 3.40820 3.41530 3.57066 3.90412 4.35810 4.41096 4.46284 4.50380 4.60995 4.73812 4.92757 5.27432 5.31615 5.43962 5.46479 5.49278 5.54897 5.75922 5.77958 5.90253 5.91700 5.97035 6.11424 6.30664 6.47436 6.50808 6.53490 6.67394 6.77133 6.86310 7.28829 7.60403 7.71347 7.71978 7.90664 8.37303 8.43566 9.12499 9.74879 10.30930 11.23203 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.019370 B = 0.002465 C = 0.002350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.180184 B =11357.764198 C =11911.108318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.006 3.994 3 Si 0.905 3.095 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.283 1.283 7 C -0.261 4.261 8 H 0.066 0.934 9 N -0.588 5.588 10 C 0.172 3.828 11 C -0.147 4.147 12 C 0.165 3.835 13 H 0.089 0.911 14 N -0.711 5.711 15 C 0.550 3.450 16 O -0.511 6.511 17 C -0.066 4.066 18 C -0.058 4.058 19 C -0.101 4.101 20 C -0.045 4.045 21 C 0.073 3.927 22 N -0.596 5.596 23 S 0.786 5.214 24 N -0.552 5.552 25 C 0.108 3.892 26 C 0.080 3.920 27 H 0.057 0.943 28 O -0.571 6.571 29 C 0.121 3.879 30 H 0.256 0.744 31 H 0.093 0.907 32 H 0.024 0.976 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.394 0.606 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.374 0.626 40 H 0.060 0.940 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.462 -19.142 13.847 23.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.193 4.193 3 Si 0.734 3.266 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.209 1.209 7 C -0.390 4.390 8 H 0.084 0.916 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.187 4.187 12 C 0.061 3.939 13 H 0.107 0.893 14 N -0.362 5.362 15 C 0.336 3.664 16 O -0.386 6.386 17 C -0.076 4.076 18 C -0.082 4.082 19 C -0.126 4.126 20 C -0.070 4.070 21 C -0.087 4.087 22 N -0.447 5.447 23 S 0.833 5.167 24 N -0.400 5.400 25 C -0.054 4.054 26 C 0.019 3.981 27 H 0.075 0.925 28 O -0.375 6.375 29 C -0.007 4.007 30 H 0.067 0.933 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.229 0.771 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.160 0.840 39 H 0.220 0.780 40 H 0.078 0.922 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -0.343 -19.406 14.090 23.984 hybrid contribution 3.104 1.277 -0.342 3.374 sum 2.761 -18.129 13.748 22.919 Atomic orbital electron populations 1.70022 1.05306 1.25900 1.52985 1.25084 0.95294 0.98549 1.00418 0.86344 0.78905 0.83194 0.78134 1.20825 1.21558 1.20936 1.19107 0.92511 0.84604 1.42822 0.91584 1.44035 1.35924 1.01170 1.50049 1.20827 0.88725 0.98250 0.87652 1.22612 1.01088 0.94250 1.00763 1.21028 0.97678 0.88998 0.86195 0.89302 1.45988 1.08758 1.44547 1.36882 1.17796 0.85524 0.80771 0.82336 1.90870 1.21965 1.63062 1.62694 1.20441 0.90001 0.99142 0.98025 1.21374 0.95347 0.96117 0.95392 1.20580 0.99922 0.96209 0.95849 1.20301 0.87109 0.99641 0.99940 1.21251 0.94058 0.97226 0.96210 1.72227 1.06384 1.32249 1.33818 1.78757 1.16551 1.15049 1.06326 1.72215 1.11518 1.26661 1.29583 1.21989 0.88662 0.98312 0.96452 1.22784 0.95937 0.83210 0.96152 0.92525 1.86491 1.50724 1.30438 1.69867 1.21520 0.98831 0.87415 0.92909 0.93350 0.88898 0.95776 0.91886 0.92282 0.77149 0.83845 0.83806 0.84046 0.77995 0.92151 0.95308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.81 11.20 55.49 0.62 -25.19 16 2 C 0.01 0.16 4.92 -17.43 -0.09 0.08 16 3 Si 0.90 21.15 29.59 -169.99 -5.03 16.12 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 7 C -0.26 -6.91 9.58 -15.06 -0.14 -7.06 16 8 H 0.07 1.69 7.88 -52.49 -0.41 1.28 16 9 N -0.59 -14.27 2.99 -172.32 -0.52 -14.79 16 10 C 0.17 4.11 5.30 -3.71 -0.02 4.09 16 11 C -0.15 -2.89 5.65 -26.61 -0.15 -3.04 16 12 C 0.16 2.96 2.12 -67.88 -0.14 2.81 16 13 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 14 N -0.71 -10.57 4.87 -54.87 -0.27 -10.84 16 15 C 0.55 9.16 7.73 -12.57 -0.10 9.06 16 16 O -0.51 -10.76 15.75 5.26 0.08 -10.68 16 17 C -0.07 -0.87 6.07 -102.50 -0.62 -1.49 16 18 C -0.06 -0.50 9.49 -39.30 -0.37 -0.87 16 19 C -0.10 -0.67 9.82 -40.30 -0.40 -1.07 16 20 C -0.05 -0.37 10.03 -39.24 -0.39 -0.76 16 21 C 0.07 0.85 7.17 -83.19 -0.60 0.26 16 22 N -0.60 -6.85 11.44 25.62 0.29 -6.56 16 23 S 0.79 8.11 23.60 -107.50 -2.54 5.57 16 24 N -0.55 -8.26 10.68 26.56 0.28 -7.97 16 25 C 0.11 1.53 7.05 -81.05 -0.57 0.96 16 26 C 0.08 1.32 3.14 -26.61 -0.08 1.24 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 O -0.57 -8.22 13.16 -35.23 -0.46 -8.68 16 29 C 0.12 2.42 6.14 -3.71 -0.02 2.40 16 30 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 31 H 0.09 2.47 6.06 -51.93 -0.31 2.15 16 32 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.39 4.51 6.64 -40.82 -0.27 4.24 16 36 H 0.14 0.86 6.37 -52.49 -0.33 0.53 16 37 H 0.14 0.44 8.06 -52.48 -0.42 0.01 16 38 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 39 H 0.37 3.77 9.08 45.56 0.41 4.19 16 40 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 41 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 355.49 15.07 5.36 5.36 Total: -1.00 -35.86 355.49 -9.69 -45.55 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -3.82 Total: 5.51 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -3.70 Total: 6.60 kcal Atomic # 7 Polarization: -65.76 SS G_CDS: 0.42 Total: -65.35 kcal Atomic # 8 Polarization: -18.98 SS G_CDS: -0.38 Total: -19.36 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.12 kcal Atomic # 16 Polarization: 8.11 SS G_CDS: -2.54 Total: 5.57 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.86 -9.69 -45.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001090691448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.347 kcal (2) G-P(sol) polarization free energy of solvation -35.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds