Wall clock time and date at job start Wed Apr 1 2020 04:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99781 * 2 1 4 4 H 1.48503 * 109.46786 * 269.99560 * 3 2 1 5 5 H 1.48490 * 109.47461 * 29.99914 * 3 2 1 6 6 H 1.48506 * 109.47068 * 150.00191 * 3 2 1 7 7 C 1.38814 * 120.00050 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99649 * 0.02562 * 7 2 1 9 9 N 1.36935 * 119.99630 * 179.97438 * 7 2 1 10 10 C 1.46500 * 119.99679 * 180.02562 * 9 7 2 11 11 C 1.53780 * 113.61770 * 155.00098 * 10 9 7 12 12 C 1.53788 * 87.07668 * 89.11780 * 11 10 9 13 13 C 1.53003 * 113.61166 * 139.98479 * 12 11 10 14 14 N 1.46498 * 109.47316 * 176.52625 * 13 12 11 15 15 C 1.34769 * 120.00372 * 179.97438 * 14 13 12 16 16 O 1.21725 * 119.99893 * 0.02562 * 15 14 13 17 17 C 1.46571 * 120.00156 * 180.02562 * 15 14 13 18 18 C 1.40543 * 126.58290 * 353.94730 * 17 15 14 19 19 N 1.30740 * 108.74532 * 179.97438 * 18 17 15 20 20 N 1.40020 * 109.60174 * 359.97438 * 19 18 17 21 21 C 1.36271 * 132.00965 * 179.97438 * 20 19 18 22 22 C 1.35184 * 120.72755 * 180.02562 * 21 20 19 23 23 C 1.40143 * 120.33221 * 0.02562 * 22 21 20 24 24 C 1.36543 * 119.40051 * 0.23234 * 23 22 21 25 25 Cl 1.73602 * 120.38466 * 179.73295 * 24 23 22 26 26 C 1.36559 * 107.90384 * 0.02562 * 20 19 18 27 27 C 1.53773 * 87.17123 * 25.39381 * 12 11 10 28 28 H 0.97007 * 120.00511 * 0.02562 * 1 2 3 29 29 H 0.96996 * 120.00928 * 0.02562 * 9 7 2 30 30 H 1.09012 * 112.84936 * 23.80896 * 10 9 7 31 31 H 1.09004 * 113.61225 * 334.57517 * 11 10 9 32 32 H 1.08997 * 113.61811 * 203.66282 * 11 10 9 33 33 H 1.08994 * 113.61427 * 270.80067 * 12 11 10 34 34 H 1.09005 * 109.47002 * 56.52945 * 13 12 11 35 35 H 1.09001 * 109.46875 * 296.53312 * 13 12 11 36 36 H 0.97003 * 119.99590 * 0.02562 * 14 13 12 37 37 H 1.08002 * 125.62390 * 359.97438 * 18 17 15 38 38 H 1.07993 * 119.63656 * 0.03250 * 21 20 19 39 39 H 1.07997 * 119.83029 * 180.02562 * 22 21 20 40 40 H 1.08006 * 120.29864 * 179.97438 * 23 22 21 41 41 H 1.09003 * 113.61560 * 89.15854 * 27 12 11 42 42 H 1.09007 * 113.61229 * 220.05297 * 27 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3796 -1.2021 0.0000 10 6 4.1121 -2.4708 0.0000 11 6 5.5258 -2.3659 -0.5960 12 6 6.0129 -2.0234 0.8219 13 6 7.3473 -2.6773 1.1861 14 7 7.7650 -2.2268 2.5161 15 6 8.9190 -2.6758 3.0481 16 8 9.6144 -3.4555 2.4234 17 6 9.3365 -2.2255 4.3790 18 6 8.7085 -1.2459 5.1671 19 7 9.3703 -1.1202 6.2876 20 7 10.4568 -2.0033 6.2929 21 6 11.4291 -2.2475 7.2160 22 6 12.3890 -3.1698 6.9807 23 6 12.3985 -3.8907 5.7790 24 6 11.4318 -3.6498 4.8452 25 17 11.4233 -4.5231 3.3448 26 6 10.4438 -2.6922 5.1139 27 6 4.7876 -2.7908 1.3459 28 1 -0.4851 0.8401 -0.0004 29 1 3.8646 -0.3621 -0.0004 30 1 3.5277 -3.2970 -0.4051 31 1 5.6404 -1.5474 -1.3066 32 1 5.9119 -3.3128 -0.9734 33 1 5.9889 -0.9570 1.0461 34 1 8.1027 -2.3944 0.4529 35 1 7.2320 -3.7612 1.1892 36 1 7.2106 -1.6058 3.0140 37 1 7.8249 -0.6889 4.8923 38 1 11.4327 -1.6983 8.1459 39 1 13.1524 -3.3519 7.7226 40 1 13.1660 -4.6271 5.5914 41 1 4.9715 -3.8540 1.5003 42 1 4.3071 -2.3148 2.2008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091134209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:29 Heat of formation + Delta-G solvation = 93.269877 kcal Electronic energy + Delta-G solvation = -26952.425493 eV Core-core repulsion = 22961.240263 eV Total energy + Delta-G solvation = -3991.185230 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.109 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.28806 -40.63704 -39.66692 -38.49781 -37.28563 -35.95253 -34.86318 -33.76972 -32.63559 -31.96872 -30.33228 -28.44452 -26.42908 -25.54185 -24.96414 -24.37614 -23.45461 -22.93361 -21.27227 -20.14876 -19.54954 -19.10815 -18.07903 -17.53870 -17.13978 -17.08041 -16.81286 -16.46338 -16.23290 -16.04283 -15.85149 -15.35191 -14.95416 -14.63089 -14.58891 -14.36862 -14.01914 -13.78404 -13.73420 -13.34722 -13.23246 -13.05588 -12.99772 -12.69535 -12.50577 -12.43883 -12.16267 -11.86467 -11.72350 -11.57484 -11.43350 -11.10662 -10.93646 -10.84143 -10.63421 -10.15669 -9.88638 -9.27886 -8.74658 -8.01579 -5.35006 -0.57702 -0.18083 0.79653 1.02721 1.38373 1.38613 1.42537 1.49578 2.03415 2.35067 2.49220 2.55727 3.16288 3.25665 3.28794 3.54110 3.65804 3.75172 3.79530 3.84287 3.99871 4.07035 4.16715 4.30436 4.35127 4.43111 4.52369 4.72362 4.76932 4.84531 4.91706 4.96225 5.01315 5.10799 5.12414 5.21047 5.31260 5.38537 5.56702 5.61807 5.65040 5.82576 6.23523 6.23837 6.72002 7.09124 7.44832 7.86179 8.05091 9.19940 Molecular weight = 348.11amu Principal moments of inertia in cm(-1) A = 0.018408 B = 0.002230 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.673109 B =12555.233495 C =13656.616731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.067 4.067 3 Si 0.956 3.044 4 H -0.280 1.280 5 H -0.297 1.297 6 H -0.247 1.247 7 C -0.231 4.231 8 H 0.056 0.944 9 N -0.733 5.733 10 C 0.145 3.855 11 C -0.133 4.133 12 C -0.104 4.104 13 C 0.147 3.853 14 N -0.719 5.719 15 C 0.583 3.417 16 O -0.560 6.560 17 C -0.329 4.329 18 C 0.124 3.876 19 N -0.333 5.333 20 N -0.266 5.266 21 C 0.102 3.898 22 C -0.132 4.132 23 C -0.047 4.047 24 C -0.077 4.077 25 Cl -0.011 7.011 26 C 0.143 3.857 27 C -0.154 4.154 28 H 0.257 0.743 29 H 0.367 0.633 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.405 0.595 37 H 0.225 0.775 38 H 0.210 0.790 39 H 0.217 0.783 40 H 0.183 0.817 41 H 0.088 0.912 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 33.104 -6.842 17.033 37.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.258 4.258 3 Si 0.783 3.217 4 H -0.206 1.206 5 H -0.224 1.224 6 H -0.172 1.172 7 C -0.362 4.362 8 H 0.074 0.926 9 N -0.375 5.375 10 C 0.036 3.964 11 C -0.172 4.172 12 C -0.123 4.123 13 C 0.024 3.976 14 N -0.370 5.370 15 C 0.372 3.628 16 O -0.441 6.441 17 C -0.344 4.344 18 C -0.056 4.056 19 N -0.154 5.154 20 N -0.031 5.031 21 C -0.023 4.023 22 C -0.153 4.153 23 C -0.071 4.071 24 C -0.106 4.106 25 Cl 0.019 6.981 26 C 0.021 3.979 27 C -0.194 4.194 28 H 0.066 0.934 29 H 0.201 0.799 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.123 0.877 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.241 0.759 37 H 0.241 0.759 38 H 0.227 0.773 39 H 0.234 0.766 40 H 0.200 0.800 41 H 0.107 0.893 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 33.291 -6.837 17.548 38.249 hybrid contribution -0.845 0.928 -0.868 1.526 sum 32.446 -5.909 16.680 36.958 Atomic orbital electron populations 1.69888 1.07210 1.26674 1.59763 1.25531 0.96142 1.01361 1.02754 0.85395 0.78771 0.79455 0.78065 1.20610 1.22422 1.17157 1.19063 0.82629 0.93421 1.41077 0.92624 1.42430 1.02218 1.03526 1.89315 1.21383 0.91594 0.87764 0.95672 1.23349 0.95326 1.02910 0.95599 1.22568 0.92526 0.99809 0.97392 1.21204 0.94688 0.98574 0.83160 1.45733 1.22844 1.48981 1.19473 1.17147 0.80781 0.80179 0.84694 1.90980 1.53768 1.36044 1.63267 1.19822 1.03361 1.11035 1.00162 1.24512 0.98145 0.93892 0.89029 1.77579 0.99710 1.14794 1.23334 1.46384 1.19753 1.24951 1.11977 1.22616 0.86090 0.99140 0.94503 1.21525 0.99888 0.95165 0.98723 1.21881 0.95845 0.98178 0.91225 1.20427 0.97959 0.98688 0.93527 1.98474 1.97546 1.73376 1.28729 1.19178 0.96134 0.94412 0.88162 1.23718 0.96695 1.00103 0.98928 0.93375 0.79938 0.92541 0.91399 0.87651 0.89236 0.91820 0.91864 0.75940 0.75898 0.77332 0.76600 0.79987 0.89339 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.29 13.97 21.65 0.30 -62.98 16 2 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 3 Si 0.96 44.97 27.74 68.60 1.90 46.87 16 4 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 6 H -0.25 -10.26 6.52 99.48 0.65 -9.61 16 7 C -0.23 -13.09 10.45 84.03 0.88 -12.21 16 8 H 0.06 3.48 8.06 -2.91 -0.02 3.46 16 9 N -0.73 -33.32 5.11 -320.17 -1.64 -34.96 16 10 C 0.15 5.28 4.57 45.57 0.21 5.49 16 11 C -0.13 -3.65 7.39 31.12 0.23 -3.42 16 12 C -0.10 -2.66 3.62 -10.27 -0.04 -2.70 16 13 C 0.15 3.49 5.50 86.38 0.47 3.97 16 14 N -0.72 -16.43 5.54 -467.16 -2.59 -19.02 16 15 C 0.58 15.55 7.78 86.42 0.67 16.22 16 16 O -0.56 -17.56 12.10 -4.43 -0.05 -17.61 16 17 C -0.33 -7.90 6.16 -19.90 -0.12 -8.02 16 18 C 0.12 2.47 11.44 85.42 0.98 3.45 16 19 N -0.33 -7.00 12.57 -56.62 -0.71 -7.72 16 20 N -0.27 -4.86 3.86 -187.20 -0.72 -5.59 16 21 C 0.10 0.85 11.17 83.30 0.93 1.78 16 22 C -0.13 -0.45 9.98 22.03 0.22 -0.23 16 23 C -0.05 -0.42 9.87 22.34 0.22 -0.20 16 24 C -0.08 -1.45 6.33 22.35 0.14 -1.31 16 25 Cl -0.01 -0.25 24.35 -2.72 -0.07 -0.31 16 26 C 0.14 3.18 6.74 39.52 0.27 3.44 16 27 C -0.15 -4.65 7.44 31.18 0.23 -4.42 16 28 H 0.26 15.76 8.31 -92.70 -0.77 14.98 16 29 H 0.37 15.83 5.76 -92.71 -0.53 15.30 16 30 H 0.06 2.19 8.10 -2.38 -0.02 2.17 16 31 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.11 2.44 8.10 -2.39 -0.02 2.42 16 33 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 34 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 35 H 0.06 1.58 7.87 -2.39 -0.02 1.56 16 36 H 0.41 7.65 7.43 -92.71 -0.69 6.96 16 37 H 0.22 2.91 7.49 -2.91 -0.02 2.89 16 38 H 0.21 0.25 8.06 -2.91 -0.02 0.23 16 39 H 0.22 -1.41 8.06 -2.91 -0.02 -1.43 16 40 H 0.18 0.53 8.06 -2.91 -0.02 0.51 16 41 H 0.09 2.40 7.92 -2.39 -0.02 2.38 16 42 H 0.05 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -81.36 365.70 1.98 -79.37 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: -0.20 Total: 23.57 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 5.76 Total: -1.63 kcal Atomic # 7 Polarization: -124.90 SS G_CDS: -5.36 Total: -130.26 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.05 Total: -17.61 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.90 Total: 46.87 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.07 Total: -0.31 kcal Total: -81.36 1.98 -79.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091134209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.643 kcal (2) G-P(sol) polarization free energy of solvation -81.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds