Wall clock time and date at job start Wed Apr 1 2020 04:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31556 * 1 3 3 Si 1.86795 * 119.99959 * 2 1 4 4 H 1.48502 * 109.47448 * 270.00036 * 3 2 1 5 5 H 1.48501 * 109.47175 * 30.00246 * 3 2 1 6 6 H 1.48506 * 109.47415 * 150.00212 * 3 2 1 7 7 C 1.38663 * 120.00220 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99731 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99751 * 359.97438 * 7 2 1 10 10 C 1.35750 * 117.00075 * 174.94575 * 9 7 2 11 11 C 1.38874 * 120.06878 * 185.26035 * 10 9 7 12 12 C 1.38106 * 119.92542 * 179.72264 * 11 10 9 13 13 C 1.38304 * 120.07204 * 0.53100 * 12 11 10 14 14 C 1.50695 * 119.93307 * 179.74764 * 13 12 11 15 15 N 1.46901 * 109.46891 * 270.02193 * 14 13 12 16 16 C 1.46907 * 110.99930 * 179.97438 * 15 14 13 17 17 C 1.53002 * 109.46965 * 180.02562 * 16 15 14 18 18 N 1.46500 * 109.46872 * 180.02562 * 17 16 15 19 19 C 1.34776 * 119.99831 * 179.97438 * 18 17 16 20 20 O 1.21626 * 119.99932 * 0.02562 * 19 18 17 21 21 C 1.47167 * 120.00129 * 179.97438 * 19 18 17 22 22 C 1.38243 * 128.47881 * 179.97438 * 21 19 18 23 23 N 1.31244 * 111.89416 * 180.02562 * 22 21 19 24 24 N 1.27335 * 120.03235 * 0.02562 * 23 22 21 25 25 S 1.56640 * 109.74401 * 359.69069 * 24 23 22 26 26 C 1.38299 * 120.13445 * 359.76820 * 13 12 11 27 27 C 1.38101 * 120.07425 * 359.95492 * 26 13 12 28 28 H 0.96996 * 120.00178 * 359.97438 * 1 2 3 29 29 H 1.07996 * 120.03745 * 0.02562 * 11 10 9 30 30 H 1.07997 * 119.96326 * 180.27708 * 12 11 10 31 31 H 1.08998 * 109.47086 * 30.01537 * 14 13 12 32 32 H 1.08996 * 109.47192 * 150.02113 * 14 13 12 33 33 H 1.00900 * 111.00125 * 303.95405 * 15 14 13 34 34 H 1.09001 * 109.46854 * 299.99530 * 16 15 14 35 35 H 1.08990 * 109.46983 * 60.00146 * 16 15 14 36 36 H 1.09008 * 109.47010 * 300.00259 * 17 16 15 37 37 H 1.09002 * 109.47358 * 59.99479 * 17 16 15 38 38 H 0.96994 * 120.00026 * 359.97438 * 18 17 16 39 39 H 1.08001 * 124.05764 * 0.03252 * 22 21 19 40 40 H 1.07999 * 119.96503 * 179.97438 * 26 13 12 41 41 H 1.07992 * 120.03608 * 180.02562 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6177 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4470 2.6526 0.7001 6 1 3.5472 1.4402 0.7000 7 6 2.0089 -1.2008 -0.0005 8 1 3.0889 -1.2007 -0.0010 9 8 1.3348 -2.3685 -0.0005 10 6 2.0700 -3.5046 -0.1076 11 6 1.4365 -4.7349 -0.2242 12 6 2.1874 -5.8884 -0.3387 13 6 3.5687 -5.8202 -0.3264 14 6 4.3849 -7.0813 -0.4459 15 7 4.6440 -7.6256 0.8937 16 6 5.4387 -8.8587 0.8163 17 6 5.6870 -9.3948 2.2277 18 7 6.4801 -10.6242 2.1505 19 6 6.8228 -11.2769 3.2787 20 8 6.4734 -10.8456 4.3609 21 6 7.6190 -12.5122 3.2012 22 6 8.0646 -13.3147 4.2349 23 7 8.7524 -14.3423 3.7952 24 7 8.9360 -14.4983 2.5449 25 16 8.2362 -13.3384 1.7585 26 6 4.2024 -4.5970 -0.2043 27 6 3.4573 -3.4394 -0.0951 28 1 -0.4850 0.8400 0.0004 29 1 0.3579 -4.7892 -0.2301 30 1 1.6954 -6.8451 -0.4339 31 1 3.8358 -7.8149 -1.0361 32 1 5.3320 -6.8560 -0.9360 33 1 5.0951 -6.9406 1.4814 34 1 4.8965 -9.6045 0.2350 35 1 6.3931 -8.6462 0.3349 36 1 6.2290 -8.6491 2.8095 37 1 4.7323 -9.6074 2.7088 38 1 6.7584 -10.9684 1.2874 39 1 7.8699 -13.1195 5.2792 40 1 5.2812 -4.5470 -0.1945 41 1 3.9527 -2.4846 -0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001124159441.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:27 Heat of formation + Delta-G solvation = 15.004278 kcal Electronic energy + Delta-G solvation = -25201.006569 eV Core-core repulsion = 21208.471194 eV Total energy + Delta-G solvation = -3992.535375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 348.104 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.94245 -40.78375 -40.67296 -38.72169 -37.31764 -35.52530 -34.26887 -33.30507 -31.85813 -31.67644 -29.59719 -28.21547 -27.35743 -25.36717 -24.00021 -23.57422 -22.95642 -21.91047 -21.73957 -20.30845 -19.82314 -18.88369 -18.60634 -17.31601 -17.24142 -16.90368 -16.47879 -16.34586 -16.18669 -16.01145 -15.67991 -15.53597 -15.38914 -15.17646 -14.77683 -14.64730 -14.30384 -13.89740 -13.84538 -13.72802 -13.39934 -13.03158 -12.96061 -12.60791 -12.48015 -12.29506 -12.21844 -12.12688 -11.97238 -11.56767 -11.26746 -11.21095 -11.14885 -10.94541 -10.78181 -10.28690 -9.73653 -9.33246 -8.87428 -8.45958 -6.14118 -1.38727 -0.27040 0.39609 0.64722 0.70683 0.84992 1.35627 1.44790 1.53007 1.75455 1.80769 2.18604 2.81749 2.93279 3.14823 3.48610 3.55849 3.59629 3.69492 3.93890 4.08208 4.11895 4.19916 4.27258 4.52855 4.55404 4.57873 4.65709 4.80520 4.85136 4.93693 4.99335 5.13611 5.17168 5.17820 5.35431 5.61437 5.75034 5.84466 6.04838 6.07814 6.21648 6.29480 6.46048 6.54589 6.89329 6.98919 7.80902 8.77408 Molecular weight = 348.10amu Principal moments of inertia in cm(-1) A = 0.029825 B = 0.001344 C = 0.001329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.590062 B =20831.673389 C =21069.807630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.024 4.024 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.272 1.272 6 H -0.253 1.253 7 C -0.413 4.413 8 H 0.102 0.898 9 O -0.236 6.236 10 C 0.112 3.888 11 C -0.209 4.209 12 C -0.047 4.047 13 C -0.159 4.159 14 C 0.126 3.874 15 N -0.696 5.696 16 C 0.054 3.946 17 C 0.124 3.876 18 N -0.703 5.703 19 C 0.604 3.396 20 O -0.554 6.554 21 C -0.303 4.303 22 C 0.075 3.925 23 N -0.279 5.279 24 N -0.291 5.291 25 S 0.516 5.484 26 C -0.061 4.061 27 C -0.245 4.245 28 H 0.272 0.728 29 H 0.109 0.891 30 H 0.146 0.854 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.345 0.655 34 H 0.094 0.906 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.416 0.584 39 H 0.227 0.773 40 H 0.141 0.859 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.234 -25.983 -0.597 32.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.221 4.221 3 Si 0.838 3.162 4 H -0.188 1.188 5 H -0.197 1.197 6 H -0.176 1.176 7 C -0.489 4.489 8 H 0.119 0.881 9 O -0.143 6.143 10 C 0.062 3.938 11 C -0.228 4.228 12 C -0.065 4.065 13 C -0.160 4.160 14 C -0.002 4.002 15 N -0.328 5.328 16 C -0.075 4.075 17 C 0.000 4.000 18 N -0.356 5.356 19 C 0.388 3.612 20 O -0.433 6.433 21 C -0.444 4.444 22 C -0.093 4.093 23 N -0.142 5.142 24 N -0.273 5.273 25 S 0.651 5.349 26 C -0.079 4.079 27 C -0.265 4.265 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.163 0.837 31 H 0.108 0.892 32 H 0.070 0.930 33 H 0.163 0.837 34 H 0.112 0.888 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.087 0.913 38 H 0.253 0.747 39 H 0.243 0.757 40 H 0.159 0.841 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 18.850 -27.076 -1.060 33.009 hybrid contribution 0.179 2.072 0.905 2.268 sum 19.029 -25.004 -0.156 31.421 Atomic orbital electron populations 1.70186 1.08049 1.28739 1.48995 1.26587 0.96833 1.02743 0.95919 0.84589 0.77816 0.74588 0.79235 1.18786 1.19704 1.17625 1.21820 0.92503 0.81461 1.53143 0.88074 1.83940 1.36109 1.12692 1.81515 1.19989 0.91772 0.87895 0.94175 1.20487 0.99883 0.90814 1.11662 1.20881 0.93628 0.96487 0.95534 1.19665 0.93576 0.94734 1.08068 1.20603 0.97622 0.92240 0.89744 1.60338 1.51594 1.07730 1.13152 1.22067 0.97341 0.93141 0.94931 1.21290 0.95454 0.84906 0.98337 1.45589 1.54743 1.26769 1.08479 1.16558 0.78687 0.81451 0.84497 1.90887 1.55547 1.67565 1.29258 1.27953 1.12059 1.04802 0.99610 1.24754 0.93022 0.87811 1.03726 1.70787 1.17382 1.21124 1.04884 1.78649 1.22021 1.22752 1.03864 1.82159 1.30561 1.09167 1.13036 1.20979 0.99752 0.90993 0.96214 1.21242 0.92984 1.00188 1.12038 0.91900 0.87322 0.83668 0.89179 0.93005 0.83694 0.88808 0.92520 0.91557 0.91289 0.74698 0.75678 0.84138 0.86608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.65 13.67 21.62 0.30 -56.35 16 2 C -0.02 -1.33 5.49 84.84 0.47 -0.87 16 3 Si 1.02 42.59 29.55 68.60 2.03 44.62 16 4 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 7 C -0.41 -24.01 9.49 67.92 0.64 -23.36 16 8 H 0.10 5.36 5.20 -2.91 -0.02 5.35 16 9 O -0.24 -14.23 9.76 -22.72 -0.22 -14.46 16 10 C 0.11 5.51 6.65 22.58 0.15 5.66 16 11 C -0.21 -8.76 9.99 22.39 0.22 -8.53 16 12 C -0.05 -1.48 9.69 22.25 0.22 -1.26 16 13 C -0.16 -4.35 5.40 -19.84 -0.11 -4.46 16 14 C 0.13 2.15 5.81 85.56 0.50 2.65 16 15 N -0.70 -10.79 6.49 -517.94 -3.36 -14.15 16 16 C 0.05 0.47 5.80 86.30 0.50 0.97 16 17 C 0.12 1.40 5.93 86.38 0.51 1.92 16 18 N -0.70 -5.91 5.55 -466.61 -2.59 -8.51 16 19 C 0.60 8.49 7.80 86.59 0.68 9.17 16 20 O -0.55 -12.65 16.98 -4.11 -0.07 -12.72 16 21 C -0.30 -3.24 6.81 24.62 0.17 -3.08 16 22 C 0.07 0.94 11.55 84.78 0.98 1.92 16 23 N -0.28 -4.45 11.54 -57.87 -0.67 -5.12 16 24 N -0.29 -4.12 12.51 37.02 0.46 -3.65 16 25 S 0.52 3.14 23.05 -56.49 -1.30 1.84 16 26 C -0.06 -1.89 9.69 22.25 0.22 -1.68 16 27 C -0.25 -10.29 9.17 22.39 0.21 -10.08 16 28 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 29 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 30 H 0.15 3.62 8.06 -2.91 -0.02 3.60 16 31 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 32 H 0.05 0.73 8.08 -2.39 -0.02 0.71 16 33 H 0.34 5.64 8.72 -89.69 -0.78 4.86 16 34 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.42 0.67 7.90 -92.71 -0.73 -0.06 16 39 H 0.23 2.09 8.06 -2.91 -0.02 2.07 16 40 H 0.14 3.32 8.06 -2.91 -0.02 3.30 16 41 H 0.12 4.99 5.64 -2.91 -0.02 4.97 16 Total: -1.00 -80.12 376.45 -0.49 -80.61 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -0.41 Total: 18.93 kcal Atomic # 6 Polarization: -36.39 SS G_CDS: 5.35 Total: -31.04 kcal Atomic # 7 Polarization: -81.92 SS G_CDS: -5.86 Total: -87.78 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.29 Total: -27.17 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.30 Total: 1.84 kcal Total: -80.12 -0.49 -80.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001124159441.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.616 kcal (2) G-P(sol) polarization free energy of solvation -80.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds